Research and Publications that make use of PETSc

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%
%
% Arrhythmias are disorders of the regular rhythmic beating of the
% heart; they are the cause of the majority of sudden cardiac
% deaths. The heart beat is controlled by electrical signals moving
% through the heart. PETSc has been used by several research groups to
% simulate the electronic behavior of the heart in an attempt to more
% fully understand the developments of arrhthmias.

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@inproceedings{

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@Unpublished{

       
%        

% Figures from the work of Richard Katz
@PhdThesis{KatzThesis,

	author	=	{R.F. Katz},
	title	=	{The deep roots of volcanoes: models of magma dynamics with applications to subduction zones},
	school	=	{Columbia University},
	year	=	{2005},
	url	=	{http://www.ldeo.columbia.edu/\~{ }katz/thesis/Katz_Dissertation_Columbia05.pdf}

}
@InBook{KnepleyKatzSmith04,

	author	=	{Matthew~G. Knepley and Richard~F. Katz and Barry~F. Smith},
	editor	=	{A.~M. Bruaset and P. Bjorstad and A. Tveito},
	title	=	{Numerical Solution of Partial Differential Equations},
	chapter	=	{Developing a Geodynamics Simulation with PETSc},
	publisher	=	{Springer-Verlag},
	year	=	{2004}

}
@Article{Katz04,

	author	=	{Richard F. Katz and Marc Spiegelman and S.M. Carbotte},
	title	=	{Ridge migration, asthenospheric flow and the origin of magmatic segmentation in the global mid-ocean ridge system},
	journal	=	{Geophys.\ Res.\ Letts.},
	year	=	{2004},
	volume	=	{31},
	pages	=	{L15605},

}
@Article{Katz07,

	author	=	{Richard F. Katz and Matthew G. Knepley and Barry Smith and Marc Spiegelman and Ethan Coon},
	title	=	{Numerical simulation of geodynamic processes with the Portable Extensible Toolkit for Scientific Computation},
	journal	=	{Phys. Earth Planet. In.},
	volume	=	{163},
	pages	=	{52--68},
	year	=	{2007}

}
@Article{GoversWortel05,

	author	=	{R. Govers and M.J.R. Wortel},
	title	=	{Lithosphere tearing at STEP faults: response to edges of subduction zones},
	journal	=	{Earth and Planetary Science Letters},
	volume	=	{236/1-2},
	pages	=	{505-523},
	year	=	{2005},

}
@InProceedings{snark2,

	author	=	"B. Appelbe and D. May and S. Quenette and S. Tang and F. Wang and L. Moresi",
	year	=	"2002",
	title	=	"Towards Rapid Geoscience Model Development - The {Snark} Project",
	booktitle	=	"Proceedings of 3rd ACES (APEC Cooperation for Earthquake Simulation) Workshop"

}
@Article{snark1,

	author	=	"Bill Appelbe and David May and Louis Moresi and Steve Quenette and Siew-Chiang Tan and Feng Wang",
	title	=	"Snark - A Reusable Framwork for Geoscience Computational Models",
	journal	=	"Submitted to Pure and Applied Geosciences"

}
@InProceedings{earthquake2003,

	author	=	"Volkan Akcelik and Jacobo Bielak and George Biros and Ioannis Epanomeritakis and Antonio Fernandez Omar Ghattas and Eui Joong Kim and David O'Hallaron and Tiankai Tu",
	year	=	"2003",
	title	=	"High Resolution Forward and Inverse Earthquake Modeling on Terascale Computers",
	booktitle	=	"Proceedings of SC2003",
	note	=	"A winner of the Gordon Bell Prize for special achievement at SC2003"

}
%

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% % src="images/ocean.jpg">

@article{khatiwala07,

	author	=	"Khatiwala, S.",
	title	=	"A computational framework for simulation of biogeochemical tracers in the ocean",
	journal	=	"Glob. Biogeochem. Cycles",
	volume	=	"21",
	doi	=	"doi:10.1029/2007GB002923",
	year	=	2007,
	url	=	" http://www.ldeo.columbia.edu/\~{ }spk/Papers/KhatiwalaMatrixBiogeochemGBC07.pdf"

}
@Article{dks2004,

	author	=	"Sergey Danilov, Gennady Kivman and Jens Schroeter",
	journal	=	"Ocean Modelling",
	year	=	"2004",
	volume	=	"6(2)",
	pages	=	"125-150",
	title	=	"A finite-element Ocean Model: Principles and Evaluation",
	url	=	"http://www.sciencedirect.com/science?_ob=IssueURL&_tockey=%23TOC%236214%232004%23999939997%231%23FLA%23Volume_6,_Issue_2,_Pages_101-190_(2004)&_auth=y&view=c&_acct=C000007278&_version=1&_urlVersion=0&_userid=97338&md5=c3a50a31c599d8d38c8ce1f29117f267"

}
@Article{danilov1,

	author	=	{S. Danilov and G. Kivman and J. Schroter},
	year	=	2004,
	title	=	{Evaluation of an eddy-permitting finite-element ocean model in the North Atlantic},
	journal	=	{Ocean Modelling}

}
@Article{nerger1,

	author	=	{L. Nerger and S. Danilov and G. Kivman and W. Hiller and J. Schroter},
	year	=	2004,
	title	=	{Data Assimilation with the Ensemble Kalman Filter and the SEIK Filter applied to a Finite Element Model of the North Atlantic},
	journal	=	{Journal of marine systems},

}
@Article{lauter3,

	author	=	{M. Lauter},
	year	=	2004,
	title	=	{GrossrAumige Zirkulationsstrukturen in einem nichtlinearen adaptiven AtmosphArenmodell},
	journal	=	{Berichte zur Polar- und Meeresforschung},

}
@Article{lauter2,

	author	=	{M. Lauter and D. Handorf and K. Dethloff},
	year	=	2004,
	title	=	{Unsteady analytical solutions of the spherical shallow water equations},
	journal	=	{Journal of computational physics}

}
@PhdThesis{lauter1,

	author	=	{M. Lauter},
	year	=	2004,
	title	=	{GrossAumige Zirkulationsstrukturen in einem nichtlinearen adaptiven AtmosphArenmodell},
	institution	=	{UniversitAt Potsdam, 134 P., UniversitAt Potsdam}

}
@Article{frickenhaus1,

	author	=	{S. Frickenhaus and W. Hiller and M. Best},
	year	=	2005,
	title	=	{FoSSI : The Family of Simplified Solver Interfaces for the rapid development of parallel numerical atmosphere and ocean models},
	journal	=	{Ocean Modelling},
	volume	=	{10},
	pages	=	{185--191}

}
@article{0266-5611-24-3-034015,

	author	=	{I Epanomeritakis and V Ak\c{c}elik and O Ghattas and J Bielak},
	title	=	{A Newton-CG method for large-scale three-dimensional elasticfull-waveform seismic inversion},
	journal	=	{Inverse Problems},
	volume	=	{24},
	number	=	{3},
	pages	=	{034015 (26pp)},
	url	=	{http://stacks.iop.org/0266-5611/24/034015},
	year	=	{2008},
	abstract	=	{We present a nonlinear optimization method for large-scale3D elastic full-waveform seismic inversion. The method combines outer Gauss-Newton nonlinear iterations with inner conjugate gradient linear iterations, globalized by an Armijo backtracking line search, solved on a sequence of finer grids and higher frequencies to remain in the vicinity of the global optimum, inexactly terminated to prevent oversolving, preconditioned by L-BFGS/Frankel, regularized by a total variation operator to capture sharp interfaces, finely discretized by finite elements in the Lam\'{e} parameter space to provide flexibility and avoid bias, implemented in matrix-free fashion with adjoint-based computation of reduced gradient and reduced Hessian-vector products, checkpointed to avoid full spacetime waveform storage, and partitioned spatially across processors to parallelize the solutions of the forward and adjoint wave equations and the evaluation of gradient-like information. Several numerical examples demonstrate the grid independence of linear and nonlinear iterations, the effectiveness of the preconditioner, the ability to solve inverse problems with up to 17 million inversion parameters on up to 2048 processors, the effectiveness of multiscale continuation in keeping iterates in the basin of attraction of the global minimum, and the ability to fit the observational data while reconstructing the model with reasonable resolution and capturing sharp interfaces.}

}
%
%

Environmental/Subsurface Flow

%
%

---

%
%Modeling surface flow of water is valuable for both flood control and
%agricultural and environmental reasons. For example, regenerating the
%Florida Everglades requires extensive understanding of the surface water
%characteristics over thousands of square miles. PETSc has been used
%for a variety of these simulations.

%
%
@Unpublished{stomp,

	title	=	"STOMP (Subsurface Transport Over Multiple Phases) webpage",
	url	=	"http://stomp.pnl.gov/"

}
@INPROCEEDINGS{htfc2003,

	AUTHOR	=	"L. Hluchy and V.D. Tran and D.Froehlich and W.Castaings",
	TITLE	=	"Methods and Experiences For Parallelizing Flood Models",
	YEAR	=	"2003",
	BOOKTITLE	=	"Recent Advances in Parallel Virtual Machine and Message Passing Interface: 10th European PVM/MPI User's Group Meeting",
	NOTE	=	"Springer Lecture Notes in Computer Science, Volume 2840",
	URL	=	"http://www.springerlink.com/app/home/contribution.asp?wasp=2e9afcba8f614cd9a6f94a5294d1cbb0&referrer=parent&backto=issue,93,95;journal,588,1972;linkingpublicationresults,1:105633,1"

}
@inproceedings{hulchy-tran-astalos-fmsip,

	AUTHOR	=	"L. Hluchy and V.D. Tran and J. Astalos and M. Dobrucky and G. T. Nguyen and D.Froehlich",
	TITLE	=	"Flood Modeling System and Its Parallelization",
	YEAR	=	"2002",
	BOOKTITLE	=	"Proceedings of the International Conference on Parallel Computing in Electrical Engineering",
	URL	=	"http://portal.acm.org/citation.cfm?id=824476.825951"

}
@inproceedings{gy1,

	AUTHOR	=	"J. P. Gwo and G. T. Yeh",
	TITLE	=	"High-Performance Simulation of Surface-Subsurface Coupled Flow and Reactive Transport at Watershed Scale",
	YEAR	=	"2004",
	BOOKTITLE	=	"The International Conference on Computational Methods",
	URL	=	"http://www.sfwmd.gov/org/era/uncertainty_wkshp/GwoYeh.pdf"

}
@Unpublished{sfrsm,

	title	=	"The South Florida Regional Simulation Model and Hydrologic Simulation Engine",
	url	=	"http://www.sfwmd.gov/org/pld/hsm/cerp_pres/hse_num.pdf",
	note	=	"Simulates overland, groundwater and canal flows for south Florida. Uses PETSc for its linear solves"

}
%

---

@inproceedings{Bart_Omar:SC05,

	AUTHOR	=	{Volkan Ak{\c c}elik and George Biros and Andrei Dr{\u{a}}g{\u{a}}nescu and Omar Ghattas and Judith~C. Hill and Gart~G. van Bloemen Waanders},
	TITLE	=	{Dynamic data driven inversion for terascale simulations: real-time indentification of airborne contaminants},
	BOOKTITLE	=	{Proceedings of SC2005},
	ORGANIZATION	=	{IEEE/ACM},
	ADDRESS	=	{Seattle, WA},
	YEAR	=	{2005},
	MONTH	=	{November},
	url	=	"http://www.cs.cmu.edu/\~{ }oghattas/papers/sc05-inverse.pdf",
	Lab	=	"SNL"

}
@InProceedings{anton-krassimir-lscc,

	Author	=	{Anton Antonov and Krassimir Georgiev and Emilia Komsalova and Zahari Zlatev},
	TITLE	=	"Comparison of Two Local Refinement Methods for Large Scale Air Pollution Simulations",
	booktitle	=	"Large-Scale Scientific Computing: 4th International Conference, LSSC 2003",
	volume	=	"2907",
	year	=	2003,
	publisher	=	"Springer-Verlag",
	url	=	"http://www.springerlink.com/app/home/contribution.asp?wasp=65dfaebc36f6453d9120b8f9f86fecc5&referrer=parent&backto=issue,32,55;journal,618,2072;linkingpublicationresults,1:105633,1"

}
@INPROCEEDINGS{aa2001,

	AUTHOR	=	"Anton Antonov",
	TITLE	=	"Object-Oriented Framework for Large Scale Air Pollution Modeling",
	YEAR	=	"2001",
	BOOKTITLE	=	"Large-Scale Scientific Computing : Third International Conference, LSSC 2001, Sozopol, Bulgaria",
	NOTE	=	"Springer Lecture Notes in Computer Science, Volume 2179",
	URL	=	"http://www.springerlink.com/app/home/contribution.asp?wasp=3699c48fdb764bc7a3aa0539c7bf9f1d&referrer=parent&backto=issue,25,52;journal,1243,1972;linkingpublicationresults,1:105633,1"

}
%

---

@Article{grassley-simmons-kercher-00,

	author	=	{William E. Glassley and Ardyth M. Simmons and James R. Kercher},
	year	=	2000,
	title	=	{Mineralogical heterogeneity in fractured, porous media and its representation in reactive transport models},
	journal	=	{Applied Geochemistry},
	volume	=	{17},
	pages	=	{699--708},
	Lab	=	{LLNL}

}
@Article{glassey-nitao-03,

	author	=	{William E. Glassley and John J. Nitao and Charles W. Grant and James W. Johnson and Carl I. Steefel and James R. Kercher},
	year	=	2003,
	title	=	{The impact of climate change on vadose zone pore waters and its implication for long-term monitoring},
	journal	=	{Computers and Geosciences},
	volume	=	{29},
	pages	=	{399-411},
	Lab	=	{LLNL}

}
@Article{steefel-depaolo-lichtner-05,

	author	=	{Carl I. Steefel and Donald J. DePaolo and Peter C. Lichtner},
	year	=	2005,
	title	=	{Reactive transport modeling: An essential tool and a new research approach for the Earth sciences},
	journal	=	{Earth and Planetary Science Letters},
	Lab	=	{LLNL,LANL}

}
%
%

---

% % src="images/scalinglarge.jpg">

%
% Sample strong scaling for the LANL PFLOTRAN flow and geochemical transport suite. (Courtesy of Richard Mills, ORNL)
@Article{km2004,

	author	=	"A. Keese and H. G. Matthies",
	journal	=	"Computers and Structures",
	year	=	"2005",
	volume	=	"83",
	pages	=	"1033--1047",
	title	=	"Hierarchical parallelisation for the solution of stochastic finite element equations",
	url	=	"http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6V28-4FPDPWM-1&_user=1722207&_rdoc=1&_fmt=&_orig=search&_sort=d&_docanchor=&view=c&_acct=C000053990&_version=1&_urlVersion=0&_userid=1722207&md5=89d48cd6fd5e80989372246d8dda400f"

}
@Unpublished{hvl2002,

	title	=	{Numerical Modeling of NAPL Source Zone Treatment},
	author	=	{Hammond, G.E., A.J. Valocchi and P.C. Lichtner},
	note	=	{Poster at American Geophysical Union Fall 2002 Meeting, San Francisco, CA.},
	url	=	{http://cee.uiuc.edu/transport/hammond/agu_2002.pdf},
	year	=	"2002",
	Lab	=	{LANL}

}
@phdthesis{hammond2003,

	author	=	{Glenn E. Hammond},
	title	=	"Innovative Methods for Solving Multicomponent Biogeochemical Groundwater Transport on Supercomputers",
	school	=	{University of Illinois at Urbana-Champaign},
	year	=	2003,
	url	=	{http://cee.uiuc.edu/transport/hammond/dissertation.pdf}

}
@Unpublished{uk,

	title	=	"Parallel Least-Squares Finite Element Method for Large Eddy Simulation of Large Scale Environmental Flows and Transport Processes",
	url	=	"http://es.epa.gov/ncer/progress/grants/96/high/tsang99.html",
	note	=	"EPA funded work to simulate turbulent dispersion of toxic chemicals around buildings and in Green Bay. Used PETSc for its linear solvers",
	year	=	1999

}
@inproceedings{hammond2002,

	Author	=	"Glenn E. Hammond and Albert J. Valocchi and Peter C. Lichtner",
	TITLE	=	"Modeling Multicomponent Reactive Transport on Parallel Computers Using {J}acobian-Free {N}ewton {K}rylov with Operator-Split Preconditioners",
	year	=	2002,
	URL	=	"http://www.cee.uiuc.edu/transport/publications/hammond/CMWR_2002.pdf",
	booktitle	=	"Proceedings of the XIV International Conference on Computational Methods in Water Resources, Delft, The Netherlands.",
	Lab	=	{LANL}

}
@techreport{steefel1,

	Author	=	"C. I. Steefel",
	TITLE	=	"Software for modeling multicomponent, multidimensional reactive transport",
	year	=	2001,
	INSTITUTION	=	"Lawrence Livermore National Laboratory",
	number	=	"UCRL-MA-143182",
	Lab	=	{LLNL}

}
@ARTICLE{steefel2,

	author	=	{C. I. Steefel and A. C. Lasaga},
	title	=	"A coupled model for transport of multiple chemical-species and kinetic precipitation dissolution reactions with application to reactive flow in single-phase hydrothermal systems",
	journal	=	{Americal Journal of Science},
	year	=	1994,
	pages	=	{529-592},
	volume	=	294,
	number	=	5

}
@techreport{steefel3,

	Author	=	"C. I. Steefel and S. B. Yabusaki",
	TITLE	=	"OS3D/GIMRT, Software for Multicomponent-Multidimensional reactive transport: User's manual and programmer's guide",
	year	=	1996,
	INSTITUTION	=	"Pacific Northwest National Laboratory",
	number	=	"PNNL-11166",
	Lab	=	{PNNL}

}
@ARTICLE{2005hvl,

	author	=	{G. E. Hammond and A.J. Valocchi and P.C. Lichtner},
	title	=	"Application of {J}acobian-free {N}ewton-{K}rylov with physics-based preconditioning to biogeochemical transport",
	journal	=	{Advances in Water Resources},
	year	=	2005,
	pages	=	{359--376},
	volume	=	28,
	url	=	{ http://www.sciencedirect.com/science?_ob=IssueURL&_tockey=%23TOC%235953%232005%23999719995%23576651%23FLA%23Volume_28,_Issue_4,_Pages_315-427_(April_2005)&_auth=y&view=c&_acct=C000059129&_version=1&_urlVersion=0&_userid=2914253&md5=0d485527443c6192356cc508e1621002},
	Lab	=	{LANL}

}
@article{wang-zabar-05,

	author	=	"J Wang and N Zabaras",
	journal	=	"Int. J. Heat and Mass Transfer",
	title	=	"A Markov random field model of contamination source identification in porous media flow",
	year	=	2005

}
@InBook{kp1,

	author	=	"Jong G. Kim and Hyoung W. Park",
	chapter	=	"Advanced Simulation Technique for Modeling Multiphase Fluid Flow in Porous Media",
	url	=	"http://www.springerlink.com/app/home/contribution.asp?wasp=m5uc84pqrh1qrg8clyuh&referrer=parent&backto=issue,1,117;journal,206,1787;linkingpublicationresults,1:105633,1",
	title	=	"Lecture Notes in Computer Science",
	publisher	=	"Springer-Verlag",
	volume	=	3044,
	year	=	2004

}
@ARTICLE{2001AGUSM...H32A06K,

	author	=	{{Kim}, J.~G. and {Kim}, J.},
	title	=	{Parallel Implementation of Finite Element Groundwater Flow Model},
	journal	=	{AGU Spring Meeting Abstracts},
	year	=	2001,
	pages	=	{32-+},

}
@ARTICLE{lzb2005,

	author	=	{A. M. Wasantha Lal and Randy Van Zee and Mark Belnap},
	title	=	"CASE STUDY: A MODEL TO SIMULATE REGIONAL FLOW IN SOUTH FLORIDA",
	journal	=	{Journal of Hydraulic Engineering},
	year	=	2005,
	volume	=	131,
	number	=	4,
	pages	=	{247--258}

}
@ARTICLE{Rao2005,

	author	=	{Prasada Rao},
	title	=	"A parallel RMA2 model for simulating large-scale free surface flows",
	journal	=	{Environmental Modelling and Software},
	year	=	2005,
	pages	=	{47--53},

}
@INPROCEEDINGS{pr1,

	AUTHOR	=	"Prasada Rao",
	TITLE	=	"An Efficient Scalable Finite Element Model for Simulating Large Scale Hydrodynamic Flows",
	YEAR	=	"2003",
	BOOKTITLE	=	"Proceedings of the American Society of Civil Engineers 16th Engineering Mechanics Conference",
	URL	=	"http://www.ce.washington.edu/em03/proceedings/papers/477.pdf"

}
@INPROCEEDINGS{lichtner2004,

	AUTHOR	=	"Peter C. Lichtner and Andrew Wolfsberg",
	TITLE	=	"Modeling Thermal-Hydrological-Chemical ({THC}) Coupled Processes with Applications to Underground Nuclear Tests at the Nevada Test Site; A Grand Challenge Supercomputing Problem",
	YEAR	=	"2004",
	BOOKTITLE	=	"MPU Workshop: Conceptual Model Development for Subsurface Reactive Transport Modeling of Inorganic Contaminants, Radionuclides and Nutrients",
	note	=	"Also Los Alamos National Laboratory report: LA-UR-04-1826",
	Lab	=	{LANL}

}
%

---

@Article{aba01:petsc-app,

	author	=	{Jason Abate and Peng Wang and Kamy Sepehrnoori},
	title	=	{Parallel Compositional Reservior Simulation on Clusters of {PC}s},
	journal	=	"Int. J. High Performance Computing Applications",
	year	=	2001,
	volume	=	15,
	number	=	1,
	pages	=	{13--21},
	month	=	{Spring},

}
@PhdThesis{tjb200,

	author	=	{Thomas James Byer},
	title	=	{Preconditioned Newton Methods for Simulation of Reservoirs with Surface Facilities},
	school	=	{Stanford},
	year	=	2000

}
@InProceedings{puchyr2006,

	author	=	{Peter J. Puchyr},
	title	=	{Experience with Parallel Computing for Reservoir and Geomechanics Simulation on a Win32 Cluster},
	booktitle	=	{Proceedings of the Canadian International Petroleum Conference},
	note	=	{Paper number CIPC2006-207},
	year	=	{2006}

}
@InProceedings{texas98,

	author	=	{P. Wang and S. Balay and K. Seperhrnoori and J. Wheeler and J. Abate and B. Smith and G. A. Pope},
	title	=	{A Fully Implicit Parallel {EOS} Compositional Simulator for Large Scale Reservoir Simulation},
	booktitle	=	{Proceedings of the 1999 Society of Petroleum Engineers 15th Reservoir Simulation Symposium},
	note	=	"also available as Argonne preprint ANL/MCS-P743-1298",
	url	=	"ftp://info.mcs.anl.gov/pub/tech_reports/reports/P743.pdf",
	year	=	{1998}

}
%
%

CFD

%
@article{TerrelScottKnepleyKirby08,

	author	=	{Andy R. Terrel and L. Ridgway Scott and Matthew G. Knepley and Robert C. Kirby},
	title	=	{Automated FEM Discretizations for the Stokes Equation},
	journal	=	{BIT},
	volume	=	{48},
	number	=	{2},
	year	=	{2008}

}

@Article{MartaMaderMartinsWeideAlonso07,

	Author	=	"A. C. Marta and C. A. Mader and J. R. R. A. Martins and E. {Van der Weide} and J. J. Alonso",
	TITLE	=	"A methodology for the development of discrete adjoint solvers using automatic differentiation tools",
	Journal	=	"Computational Fluid Dyanmics",
	volume	=	21,
	pages	=	"307--327",
	year	=	2007

}
@techreport{avb2008,

	Author	=	"V.R. Ambati and J.J.W. van der Vegt and O. Bokhove",
	TITLE	=	"Variational Space-time (Dis)continuous Galerkin Method for Linear Free Surface Waves",
	year	=	2008,
	INSTITUTION	=	"University of Twente, the Netherlands",
	url	=	"http://eprints.eemcs.utwente.nl/11714/01/memo1863.pdf"

}
@InProceedings{bdsm2005,

	author	=	{M. Bozkurttas and H. Dong and V. Seshadri and R. Mittal},
	title	=	{Towards Numerical Simulation of Flapping Foils on Fixed Cartesian Grids},
	booktitle	=	{43rd AIAA Aerospace Sciences Meeting and Exhibit},
	year	=	2005,
	url	=	{http://project.seas.gwu.edu/~fsagmae/papers/AIAA_2005_0079.pdf}

}
@InProceedings{ms2006,

	author	=	{S. Muller and Y. Stiriba},
	title	=	{A MULTILEVEL FINITE VOLUME METHOD WITH MULTISCALE-BASED GRID ADAPTATION FOR STEADY COMPRESSIBLE FLOWS},
	booktitle	=	{European Conference on Computational Fluid Dynamics: ECCOMAS CFD 2006},
	year	=	2006,
	url	=	{http://www.numerical.rl.ac.uk/people/marioli/Archives/ECCOMAS-CFD-2006/documents/197.pdf}

}
@Article{AraujoTeixeiraCunhaGroth08,

	Author	=	{B. J. Ara\'ujo and J. C. F. Teixeira and A. M. Cunha and C. P. T. Groth},
	TITLE	=	"Parallel three-dimensional simulation of the injection molding process",
	journal	=	"International Journal for Numerical Methods in Fluids",
	year	=	2008,
	url	=	{http://www3.interscience.wiley.com/journal/119876958/abstract?CRETRY=1&SRETRY=0}

}
@PhdThesis{a2008,

	author	=	{A. Cubero},
	title	=	{a parallel coupled algorithm for collocated grids and its application to Large Eddy Simulation of a turbulent wake},
	school	=	{University of Zaragoza (Spain)},
	year	=	2008

}
@Article{afa2007,

	Author	=	{A. Cubero and N. Fueyo},
	TITLE	=	"A Compact Momentum Interpolation Method for unsteady flows and relaxation",
	journal	=	"Numerical Heat Transfer, part B-Fundamentals",
	volume	=	56,
	number	=	6,
	pages	=	"507--529",
	year	=	2007,
	url	=	{http://www.informaworld.com/smpp/content~content=a782025305~db=all~order=page}

}
@TechReport{af2007,

	title	=	"Preconditioning based on a partially implicit implementation of Momentum Interpolation for coupled solvers",
	institution	=	"Fluid Mechanics Group of the University of Zaragoza (Spain)",
	year	=	"2007",
	author	=	"A. Cubero and N. Fueyo"

}
@InCollection{Dwight2004,

	author	=	{Richard Dwight},
	title	=	{Robust Mesh Deformation using the Linear Elasticity Equations},
	booktitle	=	{Computational Fluid Dynamics 2006},
	editor	=	{H. Deconinck and E. Dick},
	publisher	=	{Springer},
	year	=	2006,
	url	=	{http://www.maths.man.ac.uk/\~{ }rdwight/pub/rdwight-ICCFD4-LinElastDeformation-2006.pdf}

}
@InProceedings{Dwight2006,

	author	=	{Richard Dwight and Joel Brezillon},
	title	=	{Effect of Various Approximations of the Discrete Adjoint on Gradient-Based Optimization},
	booktitle	=	{Proceedings of the 44th AIAA Aerospace Sciences Meeting and Exhibit, Reno NV. AIAA-2006-0690},
	year	=	2006,
	url	=	{http://www.maths.man.ac.uk/\~{ }rdwight/pub/rdwight-AIAAReno-ApproxAdjoint.pdf}

}
@PhdThesis{Dwight2006a,

	author	=	{Richard Dwight},
	title	=	{Efficiency Improvements of {RANS}-Based Analysis and Optimization using Implicit and Adjoint Methods on Unstructured Grids},
	school	=	{School of Mathematics, University of Manchester},
	year	=	2006,
	url	=	{http://www.maths.man.ac.uk/\~{ }rdwight/pub/rdwight-PhDThesis-ImplicitAndAdjoint.pdf}

}
@InProceedings{lhdfrh,

	Author	=	{M. Lauter and D. Handorf and K. Dethloff and S. Frickenhaus and N. Rakowsky and W. Hiller},
	TITLE	=	"An adaptive Lagrange-Galerkin shallow-water model on the sphere",
	booktitle	=	"Workshop Proceedings Current Development in Shallow Water Models on the SphereMarch, 10-14, 2003, Munich University of Technology, German",
	year	=	2003

}
@InProceedings{brios-ying-2002,

	Author	=	{George Biros and Lexing Ying and Denis Zorin},
	TITLE	=	"The Embedded Boundary Integral Method (EBI) for the Incompressible Navier-Stokes equations",
	booktitle	=	"IABEM 2002, International Association for Boundary Element Methods, UT Austin",
	year	=	2002

}
@InProceedings{mohsen-straatman-ins,

	Author	=	{S.A. Mohsen Karimian and Anthony G. Straatman},
	TITLE	=	"Benchmarking of a 3D, unstructured, finite volume code for incompressible Navier-Stokes equation on a cluster of distributed-memory computers",
	booktitle	=	"Proceedings of the 19th International Symposium on High Performance Computing Systems and Applications",
	pages	=	"11--16",
	year	=	2005,
	url	=	{ http://ieeexplore.ieee.org/search/wrapper.jsp?arnumber=1430046}

}
@TechReport{bonglioli-icnmfd98,

	title	=	"Multidimensional Residual Distribution Schemes for the Pseudo-Compressible Euler and Navier-Stokes equations on Unstructured Meshes",
	institution	=	"Universita della Basilicata via della Tecnica 3",
	year	=	"1996",
	author	=	"A. Bonglioli",
	url	=	"http://www.unibas.it/utenti/bonfiglioli/icnmfd98.ps.gz"

}
@Article{deng-piquet-ctf,

	Author	=	{G. B. Deng and J. Piquet and X. Vasseur and M. Visonneau"},
	TITLE	=	"A new fully coupled method for computing turbulent flows",
	journal	=	"Computers and Fluids",
	volume	=	30,
	pages	=	"445--472",
	year	=	2001

}
@InProceedings{garbey1,

	Author	=	{M. Garbey and B. Hadri and W. Shyy.},
	TITLE	=	"Fast Elliptic Solver for Incompressible Navier Stokes Flow and Heat Transfer Problems on the Grid",
	booktitle	=	"Aerospace Sciences Meeting and Exhibit",
	note	=	"Paper No. 2005-1386",
	year	=	2005

}
@Article{pctw2004,

	Author	=	{M. S. Politano and P. M. Carrica and C. Turan and L. Weber},
	TITLE	=	"A Multidimensional Two-Phase Flow Model for the Total Dissolved Gas Downstream of Spillways",
	journal	=	"Journal of Hydraulic Research",
	note	=	{accepted for publication},
	year	=	2004

}
@Article{wcs2004,

	Author	=	{R. V. Wilson and P. M. Carrica and F. Stern},
	TITLE	=	"Unsteady RANS Method for Ship Motions with Application to Roll for a Surface Combatant",
	journal	=	"Computers and Fluids",
	note	=	{in press},
	year	=	2004

}
@Article{cws2005,

	Author	=	{P. M. Carrica and R. V. Wilson and F. Stern},
	TITLE	=	"Unsteady RANS Simulation of the Ship Forward Speed Diffraction Problem",
	journal	=	"Computers and Fluids",
	note	=	{accepted for publication},
	year	=	2005

}
@InProceedings{chnkss2008,

	Author	=	{P. M. Carrica and J. Huang and R. Noack and D. Kaushik and B. Smith and F. Stern},
	TITLE	=	"Toward Large-Scale Computations of Ship Motions with Dynamic Overset Curvilinear Grids",
	booktitle	=	"Proceedings of the 27th Symposium on Naval Hydrodynamics, Seoul, Korea",
	year	=	2008

}
@MastersThesis{mtj,

	Author	=	{M. T. Jozkowski},
	TITLE	=	"Application of Algebraic Multigrid Methods to the Solution of Stratified Flows About Submerged Bodies",
	school	=	{The Pennsylvania State University},
	year	=	2005

}
@Article{pp,

	Author	=	{E. G. Paterson and L. J. Peltier},
	TITLE	=	"Detached-Eddy Simulation of High Reynolds Number Beveled-Trailing-Edge Flows and Wakes",
	journal	=	"ASME Journal of Fluids Engineering",
	note	=	{In press},
	year	=	2005

}
@Article{eps,

	Author	=	{B. A. Edge and E. G. Paterson and G. Settles},
	TITLE	=	"Computational Study of the Wake and Contaminant Transport of a Walking Human",
	journal	=	"ASME Journal of Fluids Engineering",
	note	=	{In press},
	year	=	2005

}
@InProceedings{rp,

	Author	=	{B. Racine and E. G. Paterson},
	TITLE	=	"Computation of Maneuvering Coefficients for Non-Body-of-Revolution Submarines Using Unsteady {RANS} {CFD}",
	booktitle	=	"35th AIAA Fluid Dynamics Conference and Exhibit",
	year	=	2005

}
@InProceedings{etpp,

	Author	=	{B. A. Edge and M. F. Trujillo and E. G. Paterson and L. J. Peltier},
	TITLE	=	{Prediction of Forces and Moments on a Sonobuoy Configuration Using Overset Grids and DES},
	booktitle	=	"7th Overset Composite Grid and Solution Technology Symposium",
	year	=	2004

}
@InProceedings{pp8,

	Author	=	{E. G. Paterson and L. J. Peltier},
	TITLE	=	{Localized turbulence simulation for naval hydrodynamics: issues in using overset refinement grids and detached-eddy simulation},
	booktitle	=	"7th Overset Composite Grid and Solution Technology Symposium",
	year	=	2004

}
@InProceedings{mzwp,

	Author	=	{R. Meyer and F. J. Zajackowski and W. A. Straka,and E. G. Paterson},
	TITLE	=	"Experimental and Computational Study of Cavitation Inception on Co-Flow Nozzles",
	booktitle	=	"25th Symposium on Naval Hydrodynamics",
	year	=	2004

}
@InProceedings{ppph,

	Author	=	{E. G. Paterson and J. E. Poremba and L. J. Peltier and S. A. Hambric},
	TITLE	=	"A Physics-Based Simulation Methodology for Predicting Trailing-Edge Singing",
	booktitle	=	"25th Symposium on Naval Hydrodynamics",
	year	=	2004

}
@InProceedings{ppd,

	Author	=	{E. G. Paterson and L. J. Peltier},
	TITLE	=	"Detached-Eddy Simulation of High Reynolds Number Trailing-Edge Flows and Wakes",
	booktitle	=	"Symposium on LES Advancements and Applications, ASME FED Summer Meeting",
	year	=	2004

}
@InProceedings{bp,

	Author	=	{W. J. Baker and E. G. and Paterson},
	TITLE	=	"Simulation of Steady Circulation Control for the General Aviation Circulation Control Wing",
	booktitle	=	{NASA/ONR Workshop on Circulation Control},
	year	=	2004

}
@InProceedings{pb,

	Author	=	{E. G. Paterson and W. J. Baker},
	TITLE	=	"RANS and Detached-Eddy Simulation of the NCCR airfoil",
	booktitle	=	{NASA/ONR Workshop on Circulation Control},
	year	=	2004

}
@InProceedings{pb3,

	Author	=	{E. G. Paterson and W. J. Baker},
	TITLE	=	"Simulation of Steady and Pulsed Circulation Controlfor Marine-Vehicle Control Surfaces",
	booktitle	=	{42nd AIAA Aerospace Sciences Meeting},
	year	=	2004

}
@InProceedings{gid1,

	Author	=	"G. Frank and J. D'Elia",
	TITLE	=	"{CFD} Modelling of the Flow Around the {Ahmed} Vehicle Model",
	year	=	2004,
	booktitle	=	"Proceedings of the 2nd Conference on Advances and Applications of GiD",
	url	=	"http://www.gid.cimne.upc.es/2004/papers/p216.pdf"

}
@INBOOK{b1,

	AUTHOR	=	"A.Bonfiglioli",
	chapter	=	"On the use of the PETSc library for unstructured {CFD} applications",
	YEAR	=	"2001",
	TITLE	=	"Science and Supercomputing at CINECA",
	pages	=	"397--400"

}
@INPROCEEDINGS{b2004,

	AUTHOR	=	"L. A. Barba",
	TITLE	=	"Computing high-Reynolds number vortical flows: a highly accurate method with a fully meshless formulation",
	YEAR	=	"2004",
	BOOKTITLE	=	"International Conference on Parallel CFD, Grand Canary, May 2004",
	note	=	"Submitted"

}
@INPROCEEDINGS{bl2004,

	AUTHOR	=	"L. A. Barba and A. Leonard",
	TITLE	=	"Computation of Viscous Vortices with Fully Meshless Method",
	YEAR	=	"2004",
	BOOKTITLE	=	"Proceedings of ICTAM meeting in Warsaw, August 2004",
	note	=	"Submitted"

}
@Article{vws1,

	author	=	"B. G. M. Van Wachem and J. C. Schouten",
	title	=	"Experimental Validation of 3-D Lagrangian VOF Model: Bubble Shape and Rise Velocity",
	institution	=	"Laboratory of Chemical Reactor Engineering, Department of Chemical Engineering and Chemistry, Eindhoven University of Technology, 5600 MB Eindhoven, The Netherlands",
	journal	=	"AIChE",
	volumne	=	48,
	number	=	12,
	month	=	"December",
	year	=	2002

}
@TechReport{lbam1,

	author	=	{P. Leggiero and A. Bonfiglioli and P. Amodio and F. Mazzi},
	title	=	{Precondizionatori paralleli per la fluidodinamica computazionale},
	institution	=	{Dipartimento Interuniversitario di Matematica Universiti degli Studi-Politecnico di Bari Italy},
	year	=	2002,
	number	=	{25/02},

}
@Article{Kees_Miller_02,

	author	=	{C. E. Kees and C. T. Miller},
	title	=	{Higher Order Time Integration Methods for Two-Phase Flow},
	journal	=	{Advances in Water Resources},
	year	=	2002,
	volume	=	25,
	number	=	2,
	pages	=	{159-177.}

}
@INPROCEEDINGS{lepotmeersessers2001,

	AUTHOR	=	"I. Lepot and F. Meers and J.A. Essers",
	TITLE	=	"Multilevel Parallel High Order Schemes for Invisid Flow Computations on 3D Unstructured Meshes",
	YEAR	=	"2001",
	BOOKTITLE	=	"ECCOMAS Computational Fluid Dynamics Conference 2001",
	url	=	"http://www.ulg.ac.be/aerodyn"

}
@INPROCEEDINGS{knepley98,

	AUTHOR	=	"Matthew Knepley and Denis Vanderstraeten",
	TITLE	=	"Parallel Building Blocks for Finite Element Simulations: Application to Solid-Liquid Mixture Flows",
	PUBLISHER	=	"Elsevier",
	YEAR	=	"1998",
	BOOKTITLE	=	"Proceedings of Parallel CFD'97",
	pages	=	"281--287"

}
@INPROCEEDINGS{pcfd97,

	AUTHOR	=	"William D. Gropp and David E. Keyes and Lois Curfman McInnes and M. D. Tidriri",
	TITLE	=	"Parallel Implicit {PDE} Computations: Algorithms and Software",
	PUBLISHER	=	"Elsevier",
	YEAR	=	"1998",
	BOOKTITLE	=	"Proceedings of Parallel CFD'97",
	pages	=	"333-344"

}
@INBOOK{knepleysamehsari98,

	AUTHOR	=	"Matthew Knepley and Ahmed H. Sameh and Vivek Sarin",
	chapter	=	"Parallel Simulation of Particulate Flows",
	editor	=	"A. Ferreira et al",
	YEAR	=	"1998",
	TITLE	=	"Lecture Notes in Computer Science 1457",
	pages	=	"226--237"

}
@Article{gkmt98,

	Author	=	"William D. Gropp and David E. Keyes and Lois Curfman McInnes and M. D. Tidriri",
	Title	=	"Globalized {N}ewton-{K}rylov-{S}chwarz Algorithms and Software for Parallel Implicit {CFD}",
	journal	=	"Int. J. High Performance Computing Applications",
	year	=	2000,
	volume	=	14,
	url	=	"ftp://info.mcs.anl.gov/pub/tech_reports/reports/P788.ps.Z",
	pages	=	"102-136"

}
@INPROCEEDINGS{AGKKS-SC99,

	AUTHOR	=	"W. K. Anderson and W. D. Gropp and D. K. Kaushik and D. E. Keyes and B. F. Smith",
	TITLE	=	"Achieving High Sustained Performance in an Unstructured Mesh {CFD} Application",
	BOOKTITLE	=	"Proceedings of SC 99",
	EDITOR	=	"",
	PUBLISHER	=	"",
	url	=	"ftp://info.mcs.anl.gov/pub/tech_reports/reports/P776.ps.Z",
	YEAR	=	"1999",
	note	=	{Winner of Gordon Bell Special Prize at SC1999}

}
@Article{gkks01,

	Author	=	"W. D. Gropp and D. K. Kaushik and D. E. Keyes and B. F. Smith",
	Title	=	"High Performance Parallel Implicit {CFD}",
	journal	=	"Journal of Parallel Computing",
	year	=	2001,
	volume	=	27,
	pages	=	"337-362",
	url	=	"http://www-fp.mcs.anl.gov/petsc-fun3d/Papers/manke.pdf"

}
@Article{cristea-sofonea-02,

	author	=	{Artur Cristea and Victor Sofonea},
	title	=	{Finite Difference lattice Boltzmann model for Liquid Vapour Systems},
	journal	=	{Proceedings of the Romanian Academy, Series A: Mathematics, Physics, Technical Sciences, Information Sciences},
	Volume	=	3,
	number	=	3,
	year	=	2002

}
@Article{cristea2,

	author	=	{Artur Cristea and Victor Sofonea},
	title	=	{Two component lattice Boltzmann model with flux limiter techniques},
	journal	=	{Proceedings of the Romanian Academy, Series A: Mathematics, Physics, Technical Sciences, Information Sciences},
	Volume	=	4,
	number	=	1,
	year	=	2003,
	pages	=	{59--64}

}
@Article{cristea1,

	author	=	{Artur Cristea and Victor Sofonea},
	title	=	{Two component lattice Boltzmann model with flux limiters},
	journal	=	{Central European Journal of Physics},
	Volume	=	2,
	number	=	2,
	year	=	2004,
	pages	=	{382--396}

}
@Article{sofnea-lamura1,

	author	=	{Victor Sofonea and Antonio Lamura and Giuseppe Gonnella and Artur Cristea},
	title	=	{Finite-difference lattice Boltzmann model with flux limiters for liquid-vapor systems},
	journal	=	{Physical Review E},
	Volume	=	70,
	number	=	4,
	year	=	2004,
	pages	=	{046702-1 / 046702-9}

}
@INPROCEEDINGS{gkks01b,

	AUTHOR	=	"W. D. Gropp and D. K. Kaushik and D. E. Keyes and B. F. Smith",
	TITLE	=	"Latency, Bandwidth, and Concurrent Issue Limitations in High-Performance {CFD}",
	BOOKTITLE	=	"Proceedings of the First MIT Conference on Computational Fluid and Solid Mechanics",
	EDITOR	=	"",
	LOCATION	=	"Cambridge, MA",
	YEAR	=	"2001",
	month	=	jun,
	url	=	"http://www-fp.mcs.anl.gov/petsc-fun3d/Papers/mit01.pdf"

}
@INPROCEEDINGS{gkks00,

	AUTHOR	=	"W. D. Gropp and D. K. Kaushik and D. E. Keyes and B. F. Smith",
	TITLE	=	"Understanding the Parallel Scalability of An Implicit Unstructured Mesh {CFD} Code",
	BOOKTITLE	=	"Proceedings of the 7th International Conference on High Performance Computing (HiPC '2000)",
	EDITOR	=	"",
	LOCATION	=	"Bangalore, India",
	YEAR	=	"2000",
	pages	=	"395--404",
	url	=	"http://www.mcs.anl.gov/petsc-fun3d/Papers/hipc00.pdf"

}
@INPROCEEDINGS{gkks-sc00,

	AUTHOR	=	"W. D. Gropp and D. K. Kaushik and D. E. Keyes and B. F. Smith",
	TITLE	=	"Performance Modeling and Tuning of an Unstructured Mesh {CFD} Application",
	BOOKTITLE	=	"Proceedings of SC2000",
	EDITOR	=	"",
	PUBLISHER	=	"IEEE Computer Society",
	YEAR	=	"2000",
	URL	=	"http://www.mcs.anl.gov/petsc-fun3d/Papers/sc00.pdf"

}
@INPROCEEDINGS{knepleysamehsarin99,

	AUTHOR	=	" Matthew Knepley and Ahmed H. Sameh and Vivek Sarin",
	TITLE	=	"Design of Large Scale Parallel Simulations",
	BOOKTITLE	=	"Proceedings of Parallel CFD'99",
	EDITOR	=	"A. Ecer et al.",
	PUBLISHER	=	"Elsevier",
	YEAR	=	"1999"

}
@INPROCEEDINGS{GKKS-PCFD99,

	AUTHOR	=	"W. D. Gropp and D. K. Kaushik and D. E. Keyes and B. F. Smith",
	TITLE	=	"Towards Realistic Performance Bounds for Implicit {CFD} codes",
	BOOKTITLE	=	"Proceedings of Parallel CFD'99",
	EDITOR	=	"A. Ecer et al.",
	PUBLISHER	=	"Elsevier",
	YEAR	=	"1999"

}
@INPROCEEDINGS{KKS97,

	AUTHOR	=	"D. K. Kaushik and D. E. Keyes and B. F. Smith",
	TITLE	=	"On the Interaction of Architecture and Algorithm in the Domain-Based Parallelization of an Unstructured Grid Incompressible Flow Code",
	BOOKTITLE	=	"Proceedings of the 10th International Conference on Domain Decomposition Methods",
	EDITOR	=	"J. Mandel et al.",
	PAGES	=	"311--319",
	PUBLISHER	=	"Wiley",
	NOTE	=	"",
	YEAR	=	"1997"

}
@INPROCEEDINGS{KKS99,

	AUTHOR	=	"D. K. Kaushik and D. E. Keyes and B. F. Smith",
	TITLE	=	"{N}ewton-{K}rylov-{S}chwarz Methods for Aerodynamic Problems: Compressible and Incompressible Flows on Unstructured Grids",
	BOOKTITLE	=	"Proceedings of the 11th International Conference on Domain Decomposition Methods",
	EDITOR	=	"C.-H. Lai et al.",
	PUBLISHER	=	"Domain Decomposition Press, Bergen",
	url	=	"ftp://info.mcs.anl.gov/pub/tech_reports/reports/P745.ps.Z",
	YEAR	=	"1999"

}
@INCOLLECTION{KKS97_cfd,

	AUTHOR	=	"D. E. Keyes and D. K. Kaushik and B. F. Smith",
	TITLE	=	"Perspectives for {CFD} on Petaflops Systems",
	BOOKTITLE	=	"CFD Review 1998",
	EDITOR	=	"M. Hafez and K. Oshima",
	PUBLISHER	=	"World Scientific, Singapore",
	PAGES	=	"1079--1096",
	NOTE	=	"",
	YEAR	=	"1998"

}
@Article{hm99,

	AUTHOR	=	"P. D. Hovland and L. C. McInnes",
	TITLE	=	"Parallel Simulation of Compressible Flow Using Automatic Differentiation and {PETSc}",
	year	=	2000,
	journal	=	"Parallel Computing",
	url	=	"ftp://info.mcs.anl.gov/pub/tech_reports/reports/P796.ps.Z",
	note	=	"special issue of Parallel Computing on ``Parallel Computing in Aerospace''"

}

@inproceedings{CruzBarbaKnepley08,

	author	=	{Felipe A. Cruz and Lorena A. Barba and Matthew G. Knepley},
	title	=	{Fast Multipole Method for particle interactions: an open source parallel library component},
	booktitle	=	{Proceedings of ParCFD2008},
	year	=	{2008},
	editor	=	{Tromeur-Dervout et. al.},
	publisher	=	{Elsevier}

}

@article{HwangCai05,

	author	=	{F.-N. Hwang and X.-C. Cai},
	title	=	{A parallel nonlinear additive Schwarz preconditioned inexact Newton algorithm for incompressible Navier-Stokes equations},
	journal	=	{J. Comput. Phys.},
	volume	=	{204},
	year	=	{2005},
	pages	=	{666--691}

}

@article{BarbaLeonard07,

	author	=	{Lorena A Barba and Anthony Leonard},
	title	=	{Emergence and evolution of tripole vortices from net-circulation initial conditions},
	journal	=	{Phys. Fluids},
	volume	=	{19},
	pages	=	{017101},
	year	=	{2007},
	doi	=	{http://dx.doi.org/10.1063/1.2409734}

}

@article{Barba07,

	author	=	{Lorena A Barba},
	title	=	{Non-shielded multipolar vortices at high Reynolds number},
	journal	=	{Phys. Rev. E},
	volume	=	{73},
	pages	=	{065303},
	year	=	{2006},
	doi	=	{http://dx.doi.org/10.1103/PhysRevE.73.065303}

}
%
%

Wave propagation and the Helmholtz equation

%
% article{DeGersem99,
% author = {Ji Wng and Yu Wang and Wen-ke Hu and Jian-ke Du},
% title = {The high performance of finite element analysis and applications of surface acoustic waves in finite elastic solids},
% }
@InProceedings{silence,

	Author	=	"J.M. and Alonso and G. Garcia and V. Hernandez and F.D. Denia and F.J. Fuenmayor",
	TITLE	=	"A parallel computing approach for solving the Helmholtz equation in 3D domains: Application to the study of acoustic behaviour of silencers",
	year	=	2004,
	booktitle	=	{Eurppean Congress on Computational Methods in Applied Sciences and Engineering (ECCOMAS)}

}
@Article{DeGersem99,

	author	=	"H. De Gersem and Domenico Lahaye and S. Vandewalle and K. Hameyer",
	title	=	"Comparison of Quasi Minimal Residual and Bi-Conjugate Gradient Iterative Methods to Solve Complex Symmetric Systems Arising from Time-Harmonic Simulations",
	journal	=	"COMPEL",
	year	=	"1999",
	volume	=	"18",
	number	=	"3",
	pages	=	"298--310",
	bibdate	=	""

}
@InProceedings{widlund-wave-98,

	author	=	{Olof B. Widlund},
	title	=	{Schwarz Methods for {H}elmholtz's Equation},
	booktitle	=	{Mathematical and Numerical Aspects of Wave Propagation},
	editor	=	{John A. DeSanto},
	year	=	1998,
	publisher	=	{SIAM},
	pages	=	{620--622},
	address	=	{Philadelphia},
	note	=	{Proceedings of the Fourth International Conference on Mathematical and Numerical Aspects of Wave Propagation, Golden, Colorado, June 1--5}

}
@InProceedings{Toselli-wave-98,

	author	=	{Andrea Toselli},
	title	=	{Overlapping {S}chwarz Methods for {M}axwell's Equations in Conductive Media},
	booktitle	=	{Mathematical and Numerical Aspects of Wave Propagation},
	editor	=	{John A. DeSanto},
	year	=	1998,
	publisher	=	{SIAM},
	address	=	{Philadelphia},
	pages	=	{540--542},
	note	=	{Proceedings of the Fourth International Conference on Mathematical and Numerical Aspects of Wave Propagation, Golden, Colorado, June 1--5}

}
@InProceedings{mcinnes-wave-98,

	author	=	{L. C. McInnes and R. Susan-Resiga and H. M. Atassi and D. E. Keyes},
	title	=	{Parallel Solution of {H}elmholtz Problems using Additive {S}chwarz Methods},
	booktitle	=	{Mathematical and Numerical Aspects of Wave Propagation},
	editor	=	{John A. DeSanto},
	year	=	1998,
	publisher	=	{SIAM},
	address	=	{Philadelphia},
	pages	=	{623--625},
	note	=	{Proceedings of the Fourth International Conference on Mathematical and Numerical Aspects of Wave Propagation, Golden, Colorado, June 1--5}

}
@InProceedings{mska98,

	author	=	"L. C. McInnes and R. Susan-Resiga and D. E. Keyes and H. M. Atassi",
	title	=	"Additive {S}chwarz Methods with Nonreflecting Boundary Conditions for the Parallel Computation of {H}elmholtz Problems",
	booktitle	=	"Proceedings of the 10th Intl. Conf. on Domain Decomposition Methods",
	editor	=	"J. Mandel et al.",
	publisher	=	"AMS",
	pages	=	"349--357",
	year	=	1998

}
@InProceedings{ccew98,

	author	=	"X.-C. Cai and M. A. Casarin, Jr. and F. W. Elliott, Jr. and O. B. Widlund",
	title	=	"Overlapping {S}chwarz Algorithms for Solving {H}elmholtz's Equation",
	booktitle	=	"Proceedings of the 10th Intl. Conf. on Domain Decomposition Methods",
	editor	=	"J. Mandel et al.",
	publisher	=	"AMS",
	pages	=	"437-445",
	year	=	1998

}
@InProceedings{ra98a,

	author	=	"R. Susan-Resiga and H. M. Atassi",
	title	=	"Parallel Computing Using {S}chwarz Domain Decomposition Method for Aeroacoustic Problems",
	booktitle	=	"Proceedings of the 4th AIAA/CEAS Aeroacoustics Conference",
	publisher	=	"AIAA",
	pages	=	"86-96",
	note	=	"AIAA paper 98-2218",
	year	=	1998

}
@InProceedings{ar98c,

	author	=	"H. M. Atassi and R. Susan-Resiga",
	title	=	"Parallel Computation of Harmonic Waves using Domain Decomposition, Part {I}: General Formulation",
	booktitle	=	"Proceedings of the ASME Noise Control and Acoustics Division",
	publisher	=	"ASME",
	note	=	"NCA-25",
	pages	=	"375-379",
	year	=	1998

}
@InProceedings{ra98b,

	author	=	"R. Susan-Resiga and H. M. Atassi",
	title	=	"Parallel Computation of Harmonic Waves using Domain Decomposition, Part {II}: Numerical Implementation and Applications",
	booktitle	=	"Proceedings of the ASME Noise Control and Acoustics Division",
	publisher	=	"ASME",
	note	=	"NCA-25",
	pages	=	"381 -388",
	year	=	1998

}
@InProceedings{cai-dd10-98,

	author	=	"Xiao-Chuan Cai and Mario A. Casarin and Frank W. Elliott, Jr. and Olof B. Widlund",
	title	=	"Overlapping {S}chwarz methods for solving {H}elmholtz's Equation",
	booktitle	=	"Domain Decomposition Methods 10",
	editors	=	"Jan Mandel and Charbel Farhat and Xiao-Chuan Cai",
	series	=	"Contemporary Mathematics",
	volume	=	"218",
	publisher	=	"American Mathematical Society",
	address	=	"Providence, Rhode Island",
	year	=	"1998",
	pages	=	"437--445",

}
%
%

Optimization

%
@PhdThesis{Prudencio1,

	author	=	{Ernesto Prudencio},
	Title	=	{Parallel Fully Coupled Lagrange-Newton-Krylov-Schwarz Algorithmsand Software for Optimization Problems Constrained by Partial Differential Equations},
	school	=	{University of Colorado, Boulder},
	year	=	2005,

}
@Article{Prudencio2,

	author	=	"Ernesto Prudencio and X. C. Cai",
	title	=	"Parallel multilevel restricted Schwarz preconditioners with pollution removing for {PDE}-constrained optimization",
	journal	=	"SIAM J. Sci. Comp.",
	note	=	"Submitted with revisions"

}
@Article{Prudencio3,

	author	=	"Ernesto Prudencio and R. Byrd and X. C. Cai",
	title	=	"Parallel full space SQP Lagrange-Newton-Krylov-Schwarz algorithms for {PDE}-constrained Optimization Problems",
	journal	=	"SIAM J. Sci. Comp.",
	Volume	=	"27",
	pages	=	"1305--1328",
	year	=	"2006"

}
@inproceedings{Prudencio4,

	title	=	"Domain decomposition methods for {PDE}-constrained optimization problems",
	author	=	"Ernesto Prudencio and R. Byrd and X. C. Cai",
	booktitle	=	"VECPAR 2004",
	editor	=	{M. Dayde and J. Dongarra and V. Hernandex and J. Palma},
	publisher	=	"Springer",
	year	=	"2004",
	pages	=	"569--582"

}
@Article{belhamadia-fortin-pcp,

	author	=	"Youssef Belhamadia and Andre Fortin and Eric Chamberland",
	title	=	"Three-dimensional anisotropic mesh adaptation for phase change problems",
	journal	=	"Journal of Computational Physics",
	Volume	=	"201",
	pages	=	"753-770",
	year	=	"2004",
	url	=	"http://portal.acm.org/citation.cfm?id=1055817.1055834#references"

}
@Article{biros00,

	author	=	"George Biros and Omar Ghattas",
	title	=	"A Lagrange-Newton-Krylov-Schur Method for PDE Constrained Optimization",
	journal	=	"SIAG-Opt Views and News",
	Volume	=	"11",
	number	=	"2",
	year	=	"2000",
	month	=	"august",
	url	=	"http://www.cs.cmu.edu/\~{ }oghattas/papers/siag-opt/siag-opt.pdf"

}
@techreport{bmm99,

	Author	=	"Steve Benson and Lois Curfman McInnes and Jorge Mor\'{e}",
	TITLE	=	"{GPCG}: A case study in the performance and scalability of optimization algorithms",
	year	=	1999,
	INSTITUTION	=	"Mathematics and Computer Science Division, Argonne National Laboratory",
	url	=	"ftp://info.mcs.anl.gov/pub/tech_reports/reports/P768.ps.Z",
	number	=	"ANL/MCS-P768-0799"

}
@inproceedings{oghattas1999,

	author	=	"George Biros and Omar Ghattas",
	title	=	"Parallel preconditioners for KKT systems arising in optimal control of viscous incompressible flows",
	booktitle	=	"Proceedings of Parallel CFD '99, Williamsburg, Virginia, USA, May 23-26, 1999",
	url	=	"http://www.cs.cmu.edu/\~{ }oghattas/papers/pcfd99/pcfd99.pdf",
	year	=	1999

}
@inproceedings{hkms00,

	title	=	"Using Automatic Differentiation for Second-order Matrix-free Methods in PDE-constrained Optimization",
	author	=	"P. D. Hovland and D. E. Keyes and L. C. McInnes and W. Samyono",
	url	=	"http://www.icase.edu/\~{ }keyes/papers/ad2000.ps",
	booktitle	=	"Automatic Differentiation of Algorithms: From Simulation to Optimization",
	editor	=	{George Corliss and Christ\`{e}le Faure and Andreas Griewank and Laurent Hasco\"{e}t and Uwe Naumann},
	publisher	=	"Springer",
	year	=	"2002"

}
@techreport{bg011,

	author	=	"George Biros and Omar Ghattas",
	title	=	"Parallel Lagrange-Newton-Krylov-Schur Methods for PDE-Constrained Optimization. Part I: The Krylov-Schur Solver",
	institution	=	"Laboratory for Mechanics, Algorithms, and Computing, Carnegie Mellon University",
	year	=	"2001",
	url	=	"http://www.cs.cmu.edu/\~{ }oghattas/papers/lnks/lnks1.pdf"

}
@techreport{bg012,

	author	=	"George Biros and Omar Ghattas",
	title	=	"Parallel Lagrange-Newton-Krylov-Schur Methods for PDE-Constrained Optimization. Part II: The Lagrange-Newton Solver, and its Application to Optimal Control of Steady Viscous Flows",
	institution	=	"Laboratory for Mechanics, Algorithms, and Computing, Carnegie Mellon University",
	year	=	"2001",
	url	=	"http://www.cs.cmu.edu/\~{ }oghattas/papers/lnks/lnks2.pdf"

}
%
%

Fast Algorithms

%
@article{YokotaBarbaKnepley09,

	author	=	{Rio Yokota and L A Barba and Matthew G Knepley},
	title	=	{PetRBF -- A parallel O(N) algorithm for radial basis function interpolation},
	note	=	{Submitted},
	url	=	{http://arxiv.org/abs/0909.5413v1}

}
@article{CruzKnepleyBarba09,

	author	=	{Felipe A Cruz and Matthew G Knepley and L A Barba},
	title	=	{PetFMM -- A dynamically load-balancing parallel fast multipole library},
	note	=	{Submitted},
	url	=	{http://arxiv.org/abs/0905.2637}

}
%
%

Other Application Areas

%
@misc{GordonBell09,

	author	=	{Dinesh Kaushik and Michael Smith and Allan Wollaber and Barry Smith and Andrew Siegel and Won Sik Yang},
	title	=	{Enabling High Fidelit Neutron Transport Simulations on Petascale Architectures},
	note	=	{SC '09 Gordon Bell Prize Submission},
	year	=	{2009}

}

@article{KnepleyKarpeevDavidovitsEisenbergGillespie09,

	author	=	{Matthew G. Knepley and Dmitry A. Karpeev and Seth Davidovits and Robert~S. Eisenberg and Dirk Gillespie},
	title	=	{Classical Density Functional Theory applied to a Confined Equilibrium Ionic Solution in Three Dimensions},
	note	=	{submitted to JCP},
	year	=	{2009}

}
@Article{scx2008,

	author	=	"SUWITO AND XIAO-CHUAN CAI AND YUNPING XI",
	title	=	"PARALLEL FINITE ELEMENT METHOD FOR COUPLED CHLORIDE MOISTURE DIFFUSION IN CONCRETE",
	journal	=	"INTERNATIONAL JOURNAL OF NUMERICAL ANALYSIS AND MODELING",
	Volume	=	"3",
	number	=	"4",
	year	=	"2006",
	url	=	"http://www.math.ualberta.ca/ijnam/Volume-3-2006/No-4-06/2006-04-06.pdf"

}
@TechReport{kdgs2008,

	year	=	2008,
	school	=	"Centro Internacional de Methodos Numericos en Ingenieria, Argentina",
	title	=	"High Performance Simulations of Electrokinetic Flow and Transport in Microfluidic Chips",
	author	=	"Pablo A. Klera and Lisandro D. Dalcin and Fabio A. Guarnieria and Mario A. Stortia",
	url	=	"http://www.cimec.org.ar/ojs/index.php/cmm/article/view/1383"

}
@techreport{jj2007,

	author	=	"Boris Jeremic and Guanzhou Jie",
	title	=	"Parallel Finite Element Computations for Soil-Foundation-Structure Interaction Problems Report",
	institution	=	"UCD CompGeoMech 02--2007",
	year	=	"2007",
	url	=	"http://sokocalo.engr.ucdavis.edu/~jeremic/wwwpublications/CV-R23.pdf"

}
@Unpublished{Kuiper08,

	title	=	"Fast 3D frequency-dependent Radiative Transfer for Magneto-Hydrodynamics",
	author	=	"Rolf Kuiper",
	institution	=	"Max-Planck-Institute for Astronomy",
	url	=	"http://www.mpia.de/~kuiper/MAKEMAKE.html",
	year	=	2008

}
@INPROCEEDINGS{srksyp2008,

	AUTHOR	=	"M. A. Smith and C. Rabiti and D. Kaushik and B. Smith and W. S. Yang and G. Palmiotti",
	TITLE	=	"Fast reactor core simulations using the UNIC code",
	BOOKTITLE	=	{Proceedings of the International Conference on the Physics of Reactors ����Nuclear Power: A Sustainable Resource����},
	YEAR	=	"2008"

}
@INPROCEEDINGS{psrlkssl2007,

	AUTHOR	=	{G. Palmiotti and M. A. Smith and C. Rabiti and M. Leclere and D. Kaushik and A. Siegel and B. Smith and E. E. Lewis},
	TITLE	=	"UN��C: Ultimate Neutronic Investigation Code",
	BOOKTITLE	=	"Joint International Topical Meeting on Mathematics and Computation and Supercomputing in Nuclear Applications",
	YEAR	=	"2007"

}
@INPROCEEDINGS{sprkssl2007,

	AUTHOR	=	{M. A. Smith and G. Palmiotti and C. Rabiti and D. Kaushik and A. Siegel and B. Smith and E. E. Lewis},
	TITLE	=	"PNFE Component of the UNIC Code",
	BOOKTITLE	=	"Joint International Topical Meeting on Mathematics and Computation and Supercomputing in Nuclear Applications",
	YEAR	=	"2007"

}
@inproceedings{dc-oop-03,

	AUTHOR	=	"H. Digonnet and T. Coupez",
	TITLE	=	"Object-oriented programming for fast-and-easy development of parallel applications in forming processes simulation",
	BOOKTITLE	=	"Proceedings of the Second MIT Conference on Computational Fluid and Solid Mechanics",
	YEAR	=	"2003"

}
@INPROCEEDINGS{dc-cfm-03,

	AUTHOR	=	"H. Digonnet and T. Coupez",
	TITLE	=	"Calcul parallele en mise en forme des materiaux",
	BOOKTITLE	=	"XVIeme Congres Francais de Mecanique",
	YEAR	=	"2003"

}
@INPROCEEDINGS{dsc-pcsev-04,

	AUTHOR	=	"H. Digonnet and L. Silva and T. Coupez",
	TITLE	=	"Parallel computation for solving efficiently viscoelastic fluid flow problems",
	BOOKTITLE	=	"Proceedings of ECCOMAS 2004",
	YEAR	=	"2004"

}
@INPROCEEDINGS{dsc-pca3fs-04,

	AUTHOR	=	"H. Digonnet and L. Silva and T. Coupez",
	TITLE	=	"Parallel computation applied to 3D FE simulation of polymer injection molding",
	BOOKTITLE	=	"Proceedings of WCCM VI",
	YEAR	=	"2004"

}
@INPROCEEDINGS{dbcs-cpaac-05,

	AUTHOR	=	"H. Digonnet and O. Basset and T. Coupez and L. Silva",
	TITLE	=	"Calcul parallele appliqu aux coulements de fluides complexe",
	BOOKTITLE	=	"Proceedings of Eme Congres Francais de Mecanique",
	YEAR	=	"2005"

}


@article{zssz2006,

	author	=	"H. Zhang and B. Smith and M. Sternberg and and P. Zapol",
	title	=	"SIPs: Shift-and-Invert Parallel Spectral Transformations",
	journal	=	"TOMS",
	url	=	"http://math.nist.gov/toms/Current.html#v33n2",
	Volumne	=	"33",
	number	=	2,
	year	=	2007,
	lab	=	"ANL"

}
@article{gs2006,

	author	=	"Fang Jin and Nivedita R. Gupta and Kathleen J. Stebe",
	title	=	"The detachment of a viscous drop in a viscous solution in the presence of a soluble surfactant",
	journal	=	"Phys. Fluids",
	volume	=	18,
	year	=	2006,
	url	=	"http://scitation.aip.org/dbt/dbt.jsp?KEY=PHFLE6&Volume=LASTVOL&Issue=LASTISS"

}
@article{jmemsci,

	author	=	"Bo Zhou and Adam Powell",
	title	=	"Phase Field Simulations of Liquid-Liquid Demixing During Immersion Precipitation of Polymeric Membranes in 2D and 3D",
	journal	=	"J. Membrane Sci.",
	volume	=	268,
	number	=	2,
	pages	=	"150--164",
	year	=	2006,
	month	=	jan,
	day	=	15,
	url	=	"http://dx.doi.org/10.1016/j.memsci.2005.05.030"

}
@INPROCEEDINGS{vbde2002,

	AUTHOR	=	"Anke Veser and Wolfgang Breitung and Sergey Dorofeev and Alexander Efimenko",
	TITLE	=	"Flame Acceleration Distance in Obstacle-Laden Tubes",
	BOOKTITLE	=	"Proceedings of the NINTH INTERNATIONAL CONFERENCE ON NUMERICAL COMBUSTION",
	url	=	"http://web.ing.unisannio.it/icnc2002/CP21Turbulent_Combustion-Deflagrations_Jets_&_Fires.pdf",
	YEAR	=	"2002"

}
@INPROCEEDINGS{wid2005,

	AUTHOR	=	"Alexander I. Bobenko and Peter Schrader",
	TITLE	=	"Discrete Willmore Flow",
	BOOKTITLE	=	"Eurographics Symposium on Geometry Processing",
	url	=	"http://www.math.tu-berlin.de/\~{ }bobenko/Papers/Willmore.pdf",
	YEAR	=	"2005",
	editor	=	"M. Desbrun and H. Pottmann"

}
@article{stj2003,

	author	=	"A. Scascighini and A. Troxler and R. Jeltsch",
	journal	=	"International Journal for Numerical Methods in Fluids",
	volume	=	41,
	issue	=	4,
	title	=	"A numerical method for inverse design based on the inverse Euler equations",
	year	=	2003,
	pages	=	"339--355",
	url	=	"http://www3.interscience.wiley.com/cgi-bin/abstract/102521480/ABSTRACT"

}
@PhdThesis{AS2001,

	author	=	{ANDREA SCASCIGHINI},
	title	=	{A Numerical Method for the Design of Internal Flow Configurations Based on the Inverse Euler Equations},
	school	=	{SWISS FEDERAL INSTITUTE OF TECHNOLOGY, ZURICH},
	year	=	{2001},
	url	=	{http://www.sam.math.ethz.ch/\~{ }andrea/}

}
@article{hb2005,

	author	=	"E. McKay Hyde and Oscar P. Bruno",
	journal	=	"Journal of Computational Physics",
	volume	=	202,
	title	=	"A fast, higher-order solver for scattering by penetrable bodies in three dimensions",
	year	=	2005,
	pages	=	"236--261",
	url	=	"http://www.acm.caltech.edu/\~{ }bruno/hyde_bruno_3d_jcp.pdf"

}
@mastersThesis{d2002,

	author	=	{Matthew F Dixon},
	title	=	{PARALLEL SOLUTION OF HIGH ORDER FINITE DIFFERENCE SCHEMES FOR PRICING MULTI-DIMENSIONAL AMERICAN OPTIONS},
	school	=	{READING UNIVERSITY},
	year	=	{2002},
	url	=	{http://www.ma.ic.ac.uk/\~{ }mdixion/papers/MScThesis.pdf.gz}

}
@techreport{gzb,

	author	=	"David Gleich and Leonid Zhukov and Pavel Berkhin",
	title	=	"Fast Parallel PageRank: A Linear System Approach",
	institution	=	"Stanford University",
	year	=	"2004",
	url	=	"http://www.gg.caltech.edu/\~{ }zhukov/papers/ParallelPageRank-paper.pdf"

}
@PhdThesis{yergeau-99,

	author	=	{Daniel W. Yergeau},
	title	=	{A DIAL-AN-OPERATOR APPROACH TO SIMULATION OF IMPURITY DIFFUSION IN SEMICONDUCTORS},
	school	=	{Stanford},
	year	=	{1999},
	url	=	{http://www-tcad.stanford.edu/tcad/pubs/theses/yergeau.pdf}

}
@inproceedings{rathkopf-miller-00,

	AUTHOR	=	"J.A. Rathkopf and D.S. Miller and J.M. Owen and L.M. Stuart and M.R. Zika and P.G. Eltgroth and N.K. Madsen and K.P. McCandless and P.F. Nowak and M.K. Nemanic and N.A. Gentile and N.D. Keen and T.S. Palmer",
	TITLE	=	"{KULL}: {LLNL}'s {ASCI} Inertial Confinement Fusion Simulation Code",
	YEAR	=	"2000",
	BOOKTITLE	=	"Physor 2000 American Nuclear Society Topical Meeting on Advances in Reactor Physics and Mathematics and Computation into the Next Millennium",
	url	=	"http://www.llnl.gov/tid/lof/documents/pdf/237860.pdf",
	Lab	=	"LLNL"

}
@article{bonfi-palma-pas-05,

	author	=	"A. Bonfiglioli and P. De Palma and G. Pascazio and M. Napolitano",
	journal	=	"Journal of Turbomachinery",
	volume	=	127,
	title	=	"An Implicit Fluctuation Splitting Scheme for Turbomachinery Flows",
	year	=	2005,
	pages	=	"395-401"

}
@INPROCEEDINGS{fettig-sobh-05,

	AUTHOR	=	"John Fettig and Nahil Sobh and Dmitriy V. Melnikov and Jean-Pierre Leburton",
	TITLE	=	"High Performance Algorithms for Scalable Spin-Qubit Circuits with Quantum Dots",
	YEAR	=	"2005",
	BOOKTITLE	=	"Proceedings of the 5th International Conference on Linux Clusters",
	url	=	"http://www.linuxclustersinstitute.org/Linux-HPC-Revolution/Archive/PDF05/28-Fettig_J.pdf"

}
@techreport{melnikov-matagne-05,

	Author	=	"Dmitriy V. Melnikov and Philippe Matagne and Jean-Pierre Leburton and D.G. Austing and G. Yu and S. Tarucha and John Fettig and Nahil Sobh",
	TITLE	=	"Spin configurations in circular and rectangular vertical quantum dots in a magnetic field: Three-dimensional self-consistent simulation",
	year	=	2005,
	Number	=	"Arxiv preprint cond-mat/0506585",
	URL	=	"http://arxiv.org/pdf/cond-mat/0506585"

}
@INPROCEEDINGS{richard-smedley-03,

	AUTHOR	=	"Richard P. Smedley-Stevenson",
	TITLE	=	"PARALLEL THERMAL RADIATION TRANSPORT IN TWO DIMENSIONS",
	YEAR	=	"2003",
	BOOKTITLE	=	"18th International Conference on Transport Theory (18 ICTT)",
	url	=	"http://www.iprj.uerj.br/\~{ }ricardob/Evento_Cientifico_html/poster03j.pdf"

}
@article{guan-godoy-ravaioli-03,

	author	=	"D. Guan and A. Godoy and U. Ravaioli and F. Gamiz",
	journal	=	"Journal of Computational Electronics",
	volume	=	2,
	title	=	"Comparison Between Non-Equilibrium Green's Function and Monte Carlo Simulations for Transport in a Silicon Quantum Wire Structure",
	year	=	2003,
	pages	=	"335--339"

}
@article{OvtchinnikovCai04,

	author	=	"S. Ovtchinnikov and X.-C. Cai",
	journal	=	"Numer. Lin. Alg. Applics",
	volume	=	11,
	title	=	"One-level Newton-Krylov-Schwarz algorithm for unsteady nonlinear radiation diffusion problem",
	year	=	2004,
	pages	=	"867--881"

}
@article{mixedstress,

	title	=	"Floating Solids: Combining Phase Field and Fluid-Structure Interactions",
	author	=	"Adam Powell and David Dussault",
	journal	=	"Appl. Numer. Anal. Comp. Math.",
	volume	=	2,
	number	=	1,
	year	=	2005,
	pages	=	"157--166"

}
@Article{dhh2005,

	author	=	{G. Deli\'ege and F. Henrotte and K. Hameyer},
	title	=	{Accuracy analysis of the thrust force in 2D-3D finite element models},
	journal	=	{International Journal for Computation and Mathematics in Electrical and Electronic Engineering (COMPEL)},
	year	=	{2005},

}
@Article{dhh2004,

	author	=	{G. Deli\'ege and F. Henrotte and W. Deprez and K. Hameyer},
	title	=	{Finite element modelling of ion convection by electrostatic forces},
	journal	=	{IEE Proceedings Science, Measurement and Technology},
	year	=	{2004},
	volume	=	{151},
	number	=	{6},

}
@article{ma2005,

	author	=	{Mark F. Adams},
	title	=	{Algebraic multigrid techniques for strongly indefinite linear systems from direct frequency response analysis in solid mechanics},
	journal	=	{Computional Mechanics},
	year	=	2005

}
@INPROCEEDINGS{wc2004,

	AUTHOR	=	"A. Wheelock and D. Cooke",
	TITLE	=	"Computational Modeling of Ion Beam-Neutralizer Interactions in Two and Three Dimensions",
	YEAR	=	"2004",
	BOOKTITLE	=	"40th AIAA/ASME/SAE/ASEE Joint Propulsion Conference and Exhibit",
	URL	=	"http://www.aiaa.org/content.cfm?pageid=406&gTable=Paper&gID=19282"

}
@INPROCEEDINGS{allard-gouranton-ipts2002,

	AUTHOR	=	"Jeremie Allard and Valerie Gouranton and Emmanuel Melin and Bruno Raffin",
	TITLE	=	"Parallelizing Pre-rendering Computations on a Net Juggler PC Cluster",
	YEAR	=	"2002",
	BOOKTITLE	=	"Immersive Projection Technology Symposium",
	URL	=	"http://www-id.imag.fr/\~{ }allardj/files/ipts2002.pdf"

}
@article{icc,

	author	=	{D Ioan and G Ciuprina and C Ciobotaru},
	title	=	{Hybrid and concurrent algorithms for nonlinear magnetic field problems},
	journal	=	{IEEE Transactions on Magnetics},
	year	=	2000,
	url	=	{http://ieeexplore.ieee.org/Xplore/login.jsp?url=/iel5/20/19005/00877735.pdf}

}
@INPROCEEDINGS{hs1,

	AUTHOR	=	"Brian J. Henz and Dale R. Shires",
	TITLE	=	"Development and Performance Analysis of a Parallel Finite Element Application Implemented in an Object-Oriented Programming Framework",
	YEAR	=	"2003",
	BOOKTITLE	=	"PDPTA 2003",
	PAGES	=	"1286-1292",
	NOTE	=	"Resin Transfer Modeling"

}
@techreport{b2000,

	Author	=	"Rickard Bergstrom",
	TITLE	=	"Least-Squares Finite Element Methods for Electromagnetic Applications",
	year	=	2000,
	INSTITUTION	=	"Chalmers",
	number	=	"2000-05",
	URL	=	"http://www.phi.chalmers.se/pub/preprints/ps/phiprint-2000-05.ps"

}
@article{fs2004,

	author	=	{Petri Fast and Michael J. Shelley},
	title	=	{A Moving Overset Grid Method for Interface Dynamics Applied to Non-Newtonian Hele Shaw Flow},
	journal	=	{Journal of Computational Physics},
	year	=	2004,
	volume	=	{195},
	url	=	{http://www.math.nyu.edu/faculty/shelley/papers/FS2004.pdf},
	pages	=	{117-142}

}
@mastersthesis{wallach,

	author	=	"Hanna Wallach",
	title	=	"Efficient Training of Conditional Random Fields",
	school	=	"University of Edinburgh",
	year	=	"2002",
	url	=	"http://scholar.google.com/url?sa=U&q=http://www.hcrc.ed.ac.uk/\~{ }osborne/msc-projects/wallach.ps.gz"

}
@article{something,

	author	=	{T Rylander and A Bondeson},
	title	=	{Stability of explicit-implicit hybrid time-stepping schemes for Maxwells equations},
	journal	=	{Journal of Computational Physics},
	year	=	2002,
	volume	=	{179},
	pages	=	{426-438}

}
@techreport{uf1,

	Author	=	"Uwe Fabricius",
	TITLE	=	"Comparison of two implementations of AMG-preconditioned CG considering an electrostatic problem",
	year	=	2004,
	INSTITUTION	=	"Friedrich Alexander Universitat Erlangen Nurnberg Germany",
	URL	=	"http://www10.informatik.uni-erlangen.de/de/Publications/TechnicalReports/TechRep04-1.pdf",
	number	=	"04-1"

}
@INBOOK{sg1,

	author	=	"Natalia Seoane and A.J.Garca-Loureiro",
	chapter	=	"Analysis of Parallel Numerical Libraries to Solve the 3D Electron Continuity Equation",
	url	=	"http://www.springerlink.com/app/home/contribution.asp?wasp=h0xlulyhugck3y2gnt2l&referrer=parent&backto=issue,79,112;journal,212,1787;linkingpublicationresults,1:105633,1",
	title	=	"Lecture Notes in Computer Science",
	publisher	=	"Springer-Verlag",
	volume	=	3037,
	year	=	2004

}
%

---

%
% Material failure, for example, cracking of steel beams resulting
% in bridge collapse and corrosion, is a little understood phenomena. Thus simulations
% are important for prediction and prevention. PETSc has been used
% in a variety of studies of material failure.

%
%
@InProceedings{gray2,

	Author	=	"Yuan He and Joshua Gray and Richard Braatz and Richard Alkire",
	TITLE	=	"Modulized Coupled Simulation of Localized Pit Initiation in Stainless Steel",
	year	=	2004,
	booktitle	=	{American Institute of Chemical Engineers 2004 Annual Meeting}

}
@InProceedings{gray1,

	Author	=	"J. Gray and and C. Homescu and L. Petzold and Richard Alkire",
	TITLE	=	"Algorithms and Computing Architectures for Solving Differential-Algebraic Equation Systems Typically Encountered in Models of Corrosion Pit Initiation",
	year	=	2003,
	booktitle	=	"Abstracts of the Electrochemical Society 204th meeting"

}
@INPROCEEDINGS{crack2,

	AUTHOR	=	"Erin Lesulauro and Anthony R. Ingraffea and Gerd Heber and Paul A. Wawrzynek",
	TITLE	=	"A multiscale modeling approach to crack initiation in metallic polycrystals",
	BOOKTITLE	=	"44th AIAA/ASME/ASCE/AHS/ASC Structures, Structural Dynamics, and Materials Conference",
	url	=	"http://md1.csa.com/partners/viewrecord.php?requester=gs&collection=TRD&recid=A0325099AH",
	YEAR	=	"2003"

}
@techreport{hdams1,

	Author	=	"Gerd Heber and Andrew J. Dolgert and Maxirn Alt and Karen A. Mazurkiewicz and Lynd Stringer",
	TITLE	=	"Fracture Mechanics on the Intel Itanium Architecture",
	year	=	2001,
	INSTITUTION	=	"Intel Corporation",
	URL	=	"http://cedar.intel.com/media/pdf/scs/cptconitanium.pdf"

}
@inproceedings{ihwi,

	Author	=	"E. Iesulauro and G. Heber and P. A. Wawrzynek and A. R. Ingraffea",
	TITLE	=	"Modeling of 3D Metallic Polycrystals and Simulation of Crack Initiation",
	booktitle	=	"International Conference ON Computational Engineering and Sciences",
	year	=	2002,
	URL	=	"http://www.cfg.cornell.edu/\~{ }erin/erin/ices02_iesulauro.pdf"

}
@INPROCEEDINGS{crack,

	AUTHOR	=	"Bruce Carter and Chuin-Shan Chen and L. Paul Chew and Nikos Chrisochoides and Guang R. Gao and Gerd Heber and Antony R. Ingraffea and Roland Krause and Chris Myers and Demian Nave and Keshav Pingali and Paul Stodghill and Stephen Vavasis and Paul A. Wawrzynek",
	TITLE	=	"Parallel FEM Simulation of Crack Propagation",
	BOOKTITLE	=	"Proceedings of Irregular 2000",
	url	=	"http://www.cs.cornell.edu/stodghil/papers/irregular00.ps",
	YEAR	=	"2000"

}
@InProceedings{Beaudoin98,

	author	=	{A. J. Beaudoin},
	title	=	{Use of Polycrystal Plasticity Theory in Assessing Material Performance},
	booktitle	=	{Simulation of materials processing: Theory, methods, and applications - Proceedings of the Sixth International Conference, NUMIFORM'98},
	editor	=	{J. Hu\'etink and F. P. T. Baaijens},
	OPTvolume	=	{},
	OPTnumber	=	{},
	OPTseries	=	{},
	year	=	1998,
	OPTorganization	=	{},
	publisher	=	{A. A. Balkema Publishers},
	address	=	{Rotterdam, Netherlands},
	month	=	JUN,
	OPTpages	=	{},

}
%

---

@techreport{defordheld1,

	Author	=	"JF DeFord and BL Held",
	TITLE	=	"RF3P-A New Parallel Driven Frequency Electromagnetic Solver",
	year	=	2002,
	INSTITUTION	=	"Simulation Technology and Applied Research, Inc",
	URL	=	"http://www.staarinc.com/support/papers/aces2002.pdf",
	NOTE	=	"Discusses their parallel commercial solver that uses PETSc"

}
@PhdThesis{Sande2003,

	author	=	{Hans Vande Sande},
	title	=	{Modelling and Finite Element Simulation of Non-Linear and Anisotropic Quasi-Static Electromagnetic Systems},
	school	=	{Katholieke Universiteit Leuven, Belgium},
	year	=	2003

}
@article{sdchh2004,

	author	=	{H. Vande Sande and W. Deprez and J. De Coster and F. Henrotte and K. Hameyer},
	title	=	{Reducing the Computation Time of Non-Linear Problems by an Adaptive Linear System Tolerance},
	journal	=	{IEEE Transactions on Magnetics},
	year	=	2004,
	volume	=	{40},
	pages	=	{1306--1309}

}
@Article{Holst-Lindblom-etal:2004,

	author	=	{Michael Holst and Lee Lindblom and Robert Owen and Harald P. Pfeiffer and Mark A. Scheel and Lawrence E. Kidder},
	title	=	{Optimal constraint projection for hyperbolic evolution systems},
	journal	=	{Phys. Rev. D},
	year	=	2004,
	volume	=	70,
	pages	=	084017

}
@Article{marm2005,

	author	=	{Matthew Anderson and Richard A. Matzner},
	title	=	{Extended Lifetime in Computational Evolution of Isolated Black Holes},
	journal	=	{Foundations of Physics},
	volume	=	35,
	pages	=	{1572--9516},
	year	=	2005

}
@Article{Cook-Pfeiffer:2004,

	author	=	{Cook, Gregory B. and Pfeiffer, Harald P.},
	title	=	{Excision boundary conditions for black hole initial data},
	journal	=	{Phys. Rev. D},
	volume	=	70,
	pages	=	{104016--24},
	year	=	2004

}
@Article{Pfeiffer-Kidder-etal:2005,

	author	=	{Harald P. Pfeiffer and Lawrence E. Kidder and Mark A. Scheel and Deirdre Shoemaker},
	title	=	{Initial data for {E}instein's equations with superposed gravitational waves},
	journal	=	{Phys. Rev. D},
	year	=	2005,
	volume	=	{71},
	pages	=	{024020}

}
@Article{Pfeiffer-Kidder-etal:2003,

	author	=	{Pfeiffer, Harald P. and Kidder, Lawrence E. and Scheel, Mark A. and Teukolsky, Saul A.},
	title	=	{A multidomain spectral method for solving elliptic equations},
	journal	=	"CPC",
	year	=	2003,
	volume	=	{152},
	pages	=	{253--273},
	note	=	{Solves nonlinear coupled 3-D elliptic equations that arise in general relativity. For a related online version, see arXiv:gr-qc/0202096}

}
@Article{Pfeiffer-Cook-Teukolsky:2002,

	author	=	{Pfeiffer, Harald P. and Cook, Gregory B. and Teukolsky, Saul A.},
	title	=	{Comparing initial-data sets for binary black hole},
	journal	=	"PRD",
	year	=	{2002},
	volume	=	{66},
	pages	=	{024047},
	note	=	{for a related online version, seearXiv:gr-qc/0203085}

}
@PhdThesis{Pfeiffer:2003,

	author	=	{Pfeiffer, Harald P.},
	title	=	{Initial Data for Black Hole Evolutions},
	school	=	{Cornell University},
	year	=	2003

}
@techreport{h1,

	Author	=	"Erik Schnetter",
	TITLE	=	"A fast apparent horizon algorithm",
	year	=	2002,
	Number	=	"Arxiv preprint gr-qc/0206003",
	URL	=	"http://arxiv.org/pdf/gr-qc/0206003"

}
@article{h2,

	Author	=	"Erik Schnetter",
	TITLE	=	"Finding apparent horizons and other 2-surfaces of constant expansion",
	year	=	2003,
	journal	=	"Class. Quantum Grav.",
	pages	=	"4719-4737",
	volume	=	20,
	URL	=	"http://www.iop.org/EJ/article/0264-9381/20/22/001/cqg3_22_001.pdf"

}
@Article{Adams-03a,

	author	=	{Adams, M.~F.},
	title	=	{Algebraic multrigrid methods for constrained linear systems with applications to contact problems in solid mechanics},
	journal	=	{Numerical Linear Algebra with Applications},
	year	=	{2004},
	note	=	{To appear}

}
@Article{vandesande1,

	author	=	"H. Vande Sande and H. De Gersem and F. Henrotte and K. Hameyer",
	journal	=	"IEEE TRANSACTIONS ON MAGNETICS",
	year	=	"2003",
	volume	=	"39",
	pages	=	"1709--1712",
	title	=	"Solving Nonlinear Magnetic Problems Using Newton Trust Region Methods"

}
@InProceedings{vbde1,

	author	=	"Rajesh Rawat and Jennifer P. Spinti and Wing Yee and Philip J. Smith",
	year	=	"2002",
	title	=	"Parallelization and Integration of a Large Scale Hydrocarbon Pool Fire in the Uintah PSE",
	booktitle	=	"In Proceedings of Ninth Internation Conference on Numerical Combustion - ICNC 2002",
	pages	=	"49-55",
	url	=	"http://web.ing.unisannio.it/icnc2002/CP21Turbulent_Combustion-Deflagrations_Jets_&_Fires.pdf",
	note	=	"Extended abstract"

}
@Unpublished{ep1,

	title	=	"An Inherently-Parallel Method for Solving Discretized Diffusion Equations",
	author	=	"Bradley R. Eccleston and Todd S. Palmer",
	institution	=	"Department of Nuclear Engineering, Oregon State University",
	url	=	"http://www.physics.orst.edu/\~{ }bertrand/stuff/Year_Two_Report.pdf",
	note	=	"Funded under the ASCI Level III: Computational Transport Issues for Large-Scale Parallel Simulations",
	year	=	1999

}
@InProceedings{rm02,

	author	=	"Robert Malouf",
	year	=	"2002",
	title	=	"A comparison of algorithms for maximum entropy Parameter estimation",
	booktitle	=	"In Proceedings of the Sixth Conference on Natural Language Learning (CoNLL-2002)",
	pages	=	"49-55",
	url	=	"http://bulba.sdsu.edu/malouf/papers/conll02.pdf"

}
@Unpublished{hrv02,

	title	=	"Computing the Lambda Modes of a Nuclear Reactor with {SLEPc} and {PETSc}",
	author	=	"V. Hernandex and J. E. Roman and V. Vidal",
	note	=	"Submitted to CMMSE",

}
@Article{tmh2001,

	author	=	"Manfred Gilli and Evis Kellezi and Giorgio Pauletto",
	journal	=	"Journal of Economic Dynamics and Control",
	year	=	"2002",
	volume	=	"26",
	pages	=	"1499-1515",
	title	=	"Solving finite difference schemes arising in trivariate option pricing"

}
@INPROCEEDINGS{a2,

	AUTHOR	=	"C.J.Palansuriya and C-H.Lai and C.S.Ierotheou and K.A.Pericleous and D.E.Keyes",
	TITLE	=	"Comparison of three algorithms for nonlinear metal cutting problems",
	BOOKTITLE	=	"Proceedings of the 11th International Conference on Domain Decomposition Methods",
	EDITOR	=	"C.-H. Lai et al.",
	PUBLISHER	=	"Domain Decomposition Press, Bergen",
	url	=	"http://www.ddm.org/DD11/Palansuriya.ps.gz",
	YEAR	=	"1999"

}
@Unpublished{mmmdcmaa-web-page,

	title	=	"{M}ulti-{M}odel {M}ulti-{D}omain {C}omputational {M}ethods in {A}erodynamics and {A}coustics {W}eb Page",
	url	=	"http://www.cs.odu.edu/\~{ }keyes/nsf",
	author	=	"David E. Keyes",
	Institution	=	"Old Dominion University",

}
@Unpublished{oil-reservoir-sim-web-page,

	title	=	"{N}ew {G}eneration {F}ramework for {P}etroleum, {R}eservoir {S}imulation",
	url	=	"http://www.pe.utexas.edu/CPGE/new_generation",
	institution	=	"University of Texas at Austin and Argonne National Laboratory",
	key	=	"University of Texas at Austin and Argonne National Laboratory",

}
@Article{tmh2001b,

	author	=	"V. Thiagarajan and K. Milfeld and KT. Milfeld",
	journal	=	"IEEE TRANSACTIONS ON MAGNETICS ",
	year	=	"2001",
	volume	=	"37",
	pages	=	"143--146",
	title	=	"Adapting EMAP3D to parallel processing"

}
@Article{Harbury98,

	author	=	"HK Harbury and W Porod",
	journal	=	"VLSI Design",
	year	=	"1998",
	volume	=	"6",
	pages	=	"47--51",
	title	=	"Parallel computation for electronic waves in quantum corrals"

}
@Article{Bludszuwei98,

	author	=	"Mark Bludszuweit",
	journal	=	"Journal of Lightwave Technology",
	year	=	"1998",
	volume	=	"16",
	number	=	"7",
	pages	=	"1336--42",
	title	=	"Mixed Finite Element Beam Propagation Method"

}
@Article{s1,

	author	=	"J. L. Friedman and N. Stergioulas",
	journal	=	"Astrophysics Journal",
	year	=	"1998",
	volume	=	"492",
	number	=	"301",
	pages	=	"",
	title	=	""

}
@Article{s1a,

	author	=	"S. M. Morsink and N. Stergioulas and S. Blattnig",
	journal	=	"Astrophysics Journal",
	year	=	"1999",
	volume	=	"510",
	number	=	"854",
	pages	=	"",
	title	=	""

}
@phdthesis{s2,

	Author	=	"N. Stergioulas",
	TITLE	=	"Ph. D. thesis",
	year	=	1996,
	INSTITUTION	=	"University of Wisconsin-Milwaukee",

}
@inproceedings{coral1,

	AUTHOR	=	"L. Kettunen and K. Forsman and D. Levine and W. Gropp",
	TITLE	=	"Solutions of TEAM Problem \#13 Using Integral Equations in a Sequential and Parallel Computing Environment",
	BOOKTITLE	=	"Proceedings of the Miami TEAM Workshop",
	LOCATION	=	"Florida International University, Department of Electrical Engineering and Computing Science",
	MONTH	=	Nov,
	YEAR	=	1993

}
@inproceedings{coral2,

	AUTHOR	=	"L. Kettunen and K. Forsman and D. Levine and W. Gropp",
	TITLE	=	"Solutions of TEAM Problems 13 and 20 Using a Volume Integral Formulation",
	BOOKTITLE	=	"Proceedings of Aix-les-Bains TEAM Workshop",
	MONTH	=	Dec,
	YEAR	=	1994

}
@inproceedings{coral3,

	AUTHOR	=	"L. Kettunen and K. Forsman and D. Levine and W. Gropp",
	TITLE	=	"Computational Electromagnetics and Parallel Dense Matrix Computations",
	BOOKTITLE	=	"Proceedings of the SIAM Parallel Processing for Scientific Computing Conference",
	LOCATION	=	"Florida International University, Department of Electrical Engineering and Computing Science",
	YEAR	=	1995

}
@InProceedings{mijalkovic,

	author	=	{Slobodan Mijalkovi\'{c}},
	title	=	{Evaluation of Multigrid as a Solver for Stress Analysis Problems in Semiconductor Process Simulation},
	booktitle	=	{Multigrid Methods VI: Proceedings of the Sixth European Multigrid Conference Held Gent, Belgium, September 27--30, 1999.},
	editor	=	{Erik Dick, Kris Riemslagh, Jan Vierendeels},
	OPTvolume	=	{14},
	OPTseries	=	{Lecture Notes in Computational Science and Engineering},
	year	=	2000,
	publisher	=	{Springer},
	address	=	{Berlin},
	OPTpages	=	{179--184},

}
@Article{Bludszuwei98a,

	author	=	"Mark Bludszuweit",
	journal	=	"Journal of Lightwave Technology",
	year	=	"1998",
	volume	=	"16",
	number	=	"7",
	pages	=	"1336--42",
	title	=	"Mixed Finite Element Beam Propagation Method"

}
@Article{gilli-pauletto-1998,

	author	=	"Manfred Gilli and Giorgio Pauletto",
	title	=	"Parallel {K}rylov Methods for Econometric Model Simulation",
	journal	=	"Computational Economics",
	year	=	"2000",
	volume	=	"16",
	pages	=	"173--186"

}
%
%

Software Packages that use or interface to PETSc

%
@Unpublished{parpre-web-page,

	title	=	"{ParPre} {W}eb {P}age",
	url	=	"http://www.cs.utk.edu/\~{ }eijkhout/parpre.html",
	Institution	=	"University of Tennessee",
	author	=	"Victor Eijkhout",
	note	=	"This is no longer supported. A set of preconditioners built on PETSc"

}
@inproceedings{CruzKnepleyBarba09,

	author	=	{Felipe A. Cruz and Matthew G. Knepley and Lorena A. Barba},
	title	=	{PetFMM -- A dynamically load-balancing parallel fast multipole library},
	journal	=	{Submitted to Int. J. Num. Meth. Eng.},
	year	=	{2009},
	url	=	{http://arxiv.org/abs/0905.2637}

}
@Unpublished{pism,

	title	=	"PISM: a Parallel Ice Sheet Model",
	author	=	"The PISM Team",
	note	=	"We have developed a numerical model of ice sheets called PISM (a Parallel Ice Sheet Model). The thickness, temperature, velocity and age of the ice are all simulated, as is the deformation of the earth underneath the ice. New techniques for fast ice dynamics, earth deformation, and verification have are included.",
	url	=	"http://www.pism-docs.org/"

}
@Unpublished{oofem,

	title	=	"OOFEM - an object oriented finite element package",
	author	=	"Borek Patzak",
	url	=	"http://www.oofem.org"

}
@Unpublished{dks2openfvm,

	title	=	"OpenFVM - a finite volume based general purpose CFD solver",
	author	=	"Open source development",
	url	=	"http://openfvm.sourceforge.net/"

}
@Unpublished{sundar-2008w,

	title	=	"DENDRO: a parallel geometric multigrid library for trilinear finite elements on octree meshes",
	author	=	"H. Sundar and R.S. Sampath and S.S. Adavani and C. Davatzikos and G. Biros",
	institution	=	"University of Pennsylvania",
	url	=	"http://www.seas.upenn.edu/~csela/dendro/html/index.html"

}
@Unpublished{khatiwala07-software,

	title	=	"A computational framework for simulation of biogeochemical tracers in the ocean",
	author	=	"Khatiwala, S.",
	institution	=	"Columbia University",
	url	=	"http://www.ldeo.columbia.edu/\~{ }spk"

}
@INBOOK{JiaoLiMa99,

	author	=	"Xiangmin Jiao and Xiang-Yang Li and Xiaosong Ma",
	chapter	=	"SIFFEA:Scalable Integrated Framework for Finite Element Analysis",
	url	=	"http://portal.acm.org/citation.cfm?id=646895.709725",
	title	=	"Lecture Notes in Computer Science",
	publisher	=	"Springer-Verlag",
	volume	=	1732,
	year	=	1999

}
@Article{crow1,

	author	=	{C. S. Crow IV},
	title	=	"DistSolve: An Open Source Web Service for Solving Sparse Systems of Equations",
	journal	=	"Hopkins Undergraduate Research Journal",
	year	=	2003,
	url	=	"http://www.jhu.edu/hurj/issue2/09D%20Crow%20DistSolve.pdf"

}
@Unpublished{petsc-python,

	title	=	"PETSc for Python",
	author	=	"L. Dalcin and R. Paz and M. Storti",
	institution	=	"International Center for Computer Methods in Engineering",
	url	=	"http://www.cimec.org.ar/python",
	note	=	"Provides Python bindings for PETSc via SWIG"

}
@Unpublished{cfdship,

	title	=	"{CFDShip-Iowa}",
	author	=	"Pablo M. Carrica and Robert V. Wilson and Fred Stern",
	institution	=	"University of Iowa",
	url	=	"http://www.iihr.uiowa.edu/\~{ }cfdship/",
	note	=	"CFDShip-Iowa is a multiblock free surface flow solver that uses overset structured grids, designed for ship applications"

}
@Unpublished{bvw,

	title	=	"Multiflow",
	author	=	"Berend van Wachem",
	institution	=	"Mechanical Engineering - Chalmers University of Technology",
	url	=	"http://www.tfd.chalmers.se/\~{ }berend/page3.html",
	note	=	"MultiFlow is a curvlinear, multiblock, multiprocessor flowsolver for multiphase flows."

}
@Unpublished{dks2,

	title	=	"FENA - A Finite Element Model for the North Atlantic",
	author	=	"Jens Schroeter",
	institution	=	"Alfred-Wegener-Institute for Polar and Marine Research",
	url	=	"http://www.awi-bremerhaven.de/Modelling/INVERSE/FENAdesc/FENAdesc.html"

}
@Unpublished{magpar,

	author	=	"W. Scholz",
	title	=	"Magpar: Parallel Micromagnetics Code",
	Institution	=	"Vienna University of Technology",
	url	=	"http://magnet.atp.tuwien.ac.at/scholz/magpar/"

}
@Misc{libMesh:sourceforge,

	author	=	{},
	title	=	{{libMesh}:a C++ framework for the numerical simulation of partial differential equations on serial and parallel platforms},
	note	=	{[Online]},
	URL	=	{http://libmesh.sourceforge.net}

}
@Unpublished{underworld,

	author	=	"Louis Moresi",
	title	=	"UnderWorld: A Geodynamics Modelling Code",
	Institution	=	"Monash University",
	url	=	"http://www.mcc.monash.edu/twiki/view/Codes"

}
@Unpublished{Snark,

	title	=	"Snark: A suite of software for geoscientific applications and a philosophy of scientific software development",
	Institution	=	"Victorian Partnership for Advanced Computing",
	url	=	"http://vpac.org/Snark"

}
@Misc{imoose:sourceforge,

	author	=	{Guido Arians and Thomas Bauer and Christian Kaehler and Wolfgang Mai and Christoph Monzel and Dirk {van Riesen} and Christoph Schlensok},
	title	=	{Innovative Modern Object-Oriented Solving Environment - {iMOOSE}},
	note	=	{[Online]},
	URL	=	{http://imoose.sourceforge.net}

}
@Unpublished{FoSSI,

	author	=	"Stephan Frickenhaus",
	title	=	"FoSSI: Family of Simplified Solver Interfaces, offers scalable access to MPI-parallel solvers from CSR-matrix format frequently used in sequential/vector codes",
	Institution	=	"AWI-Bremerhaven, Germanny",
	url	=	"http://www.awi.de/en/research/scientific_computing/research_topics_of_scientific_computing/fossi/"

}
@Unpublished{fun3dweb,

	author	=	"Dinesh Kaushik",
	title	=	"PETSC-FUN3D Benchmark Page",
	Institution	=	"ODU/ANL",
	url	=	"http://www.mcs.anl.gov/petsc-fun3d",
	note	=	"CFD Benchmark of some solvers in PETSc"

}
@Unpublished{scirun,

	author	=	"SCIRun Development Team",
	title	=	"SCIRun",
	Institution	=	"University of Utah",
	url	=	"http://www.sci.utah.edu/stories/2001/jul_scirun120.html",
	note	=	"SCIRun now uses PETSc linear solvers"

}
@misc{prometheus,

	author	=	"Mark F. Adams",
	title	=	"Prometheus - A scalable unstructured finite element solver",
	Institution	=	"Berkeley",
	howpublished	=	"\url{http://www.cs.berkeley.edu/~madams/prometheus}",
	url	=	{http://www.cs.berkeley.edu/\~{ }madams/prometheus}

}
@Unpublished{Illuminator,

	author	=	"Adam C. Powell, IV",
	title	=	"Illuminator Distributed Visualization Library",
	url	=	"http://lyre.mit.edu/\~{ }powell/Illuminator.html"

}
@unpublished{rheoplast,

	title	=	"RheoPlast Phase Field Multi-Physics Code",
	author	=	"Adam Powell and David Dussault and Bo Zhou",
	url	=	"http://lyre.mit.edu/\~{ }powell/rheoplast.html"

}
@Misc{tao-web-page,

	title	=	"{Toolkit for Advanced Optimization (TAO)} {W}eb Page",
	author	=	"Steve Benson and Lois Curfman McInnes and Jorge Mor\'{e} and Jason Sarich",
	Institution	=	"Mathematics and Computer Science Division, Argonne National Laboratory",
	url	=	"http://www.mcs.anl.gov/tao",

}
@TechReport{tao-user-ref,

	title	=	"{Toolkit for Advanced Optimization (TAO) Users Manual}",
	author	=	"Steve Benson and Lois Curfman McInnes and Jorge Mor\'{e} and Jason Sarich",
	Institution	=	"Argonne National Laboratory",
	Year	=	2003,
	month	=	Jan,
	Number	=	"ANL/MCS-TM-242 - Revision 1.5",
	url	=	"http://www.mcs.anl.gov/tao",

}
@Unpublished{MEFpp-web-page,

	title	=	"{MEF++} {W}eb {P}age",
	url	=	"http://www.giref.ulaval.ca/ressources/projets/mefpp.html",
	Institution	=	"Groupe Interdisiplinaire de Recherche en Elements Finis",
	author	=	"Eric Chamberland",
	note	=	"A finite element code for fluid dynamics, solid mechanics, thermal and multiphysics"

}
@Unpublished{tipetsc-web-page,

	title	=	"Ti-PETSc - an interface to PETSc from Titanium",
	Institution	=	"Berkeley",
	url	=	"http://www.nersc.gov/\~{ }yunhe/cs267/final/paper.pdf"

}
@misc{multiphase-web-page,

	Author	=	"Q. Zou",
	title	=	"Multiphase flow with {PETSc}",
	Institution	=	"LANL",
	howpublished	=	"\url{http://cnls-www.lanl.gov/~qzou}",
	url	=	{http://cnls-www.lanl.gov/\~{ }qzou},
	Lab	=	{LANL}

}
@misc{electromag-web-page,

	title	=	"{EMSolve Web} page",
	Institution	=	"LLNL",
	howpublished	=	"http://www.llnl.gov/casc/emsolve",
	url	=	{http://www.Llnl.gov/casc/emsolve},
	author	=	"Daniel {White et al.}",
	Lab	=	{LLNL}

}
@Unpublished{fe-software-web-page,

	Institution	=	"Kuleuven",
	title	=	"Finite element software",
	url	=	"http://www.esat.kuleuven.ac.be/elen/research/software-development"

}
@Misc{petsc-web-page,

	author	=	{Satish Balay and Kris Buschelman and Victor Eijkhout and William~D. Gropp and Dinesh Kaushik and Matthew~G. Knepley and Lois Curfman McInnes and Barry~F. Smith and Hong Zhang},
	title	=	{{PETS}c {W}eb page},
	url	=	{http://www.mcs.anl.gov/petsc},
	howpublished	=	{\url{http://www.mcs.anl.gov/petsc}},
	year	=	{2007}

}
@Unpublished{petsc-debian-package,

	author	=	"Adam C. Powell, IV",
	title	=	"Debian package for PETSc",
	url	=	"http://lyre.mit.edu/\~{ }powell/petsc.html"

}
@Unpublished{cactus,

	title	=	"Cactus Website",
	url	=	"http://www.cactuscode.org/",
	note	=	"Provides two interface to the PETSc solvers"

}
@Unpublished{PETSc-FEM,

	author	=	"Mario Storti and Norberto Nigro",
	title	=	"PETSc-FEM: A General Purpose, Parallel, Multi-Physics FEM Program",
	Institution	=	"Centro Internacional de Metodos Computacionales en Ingenieria (CIMEC)",
	url	=	"http://www.cimec.org.ar/petscfem"

}
@misc{fidap,

	title	=	"FIDAP 8.5",
	howpublished	=	"\url{http://www.fluent.com}",
	url	=	{http://www.fluent.com},
	note	=	"Fluent's commercial finite element fluid code uses PETSc for parallel linear solves.",
	key	=	"FIDAP 8.5"

}
@Unpublished{slepc,

	author	=	" Vicente Hern\'andez and Jos\'e E. Rom\'an and Vicent Vidal",
	title	=	"{SLEPc} Homepage",
	url	=	"http://www.grycap.upv.es/slepc/",
	note	=	"Scalable Library for Eigenvalue Problem Computations"

}
@misc{deal.II,

	title	=	"deal.II",
	howpublished	=	"\url{http://www.dealii.org}",
	url	=	{http://www.dealii.org},
	note	=	"deal.II is a C++ library targeting adaptive finite elements and error estimation. It allows PETSc linear algebra and solvers to be used underneath.",
	key	=	"deal.II 5.0"

}
@misc{globalarrays,

	author	=	"Jarek {Nieplocha et al.}",
	title	=	"Global Arrays",
	Institution	=	"Pacific Northwest National Laboratories",
	howpublished	=	"\url{http://www.emsl.pnl.gov/docs/global}",
	url	=	{http://www.emsl.pnl.gov/docs/global},
	note	=	"Global arrays can use PETSc linear solvers",
	Lab	=	{PNNL}

}
%
%

Software Engineering

%
@article{AcostaMejia06,

	author	=	{Carlos D. Acosta and Carlos E. Mej\'ia},
	title	=	{Computaci\'on científica en paralelo con interfaz MATLAB a PETSc},
	journal	=	{Lecturas Matemáticas},
	volume	=	{27},
	year	=	{2006},
	pages	=	{213--224}

}


@InProceedings{QuenetteMoresiSunterAppelbe07,

	author	=	{Steve Quenette and Louis Moresi and {P. D.} Sunter and Bill F. Appelbe},
	title	=	{Explaining StGermain: An aspect oriented environment for building extensible computational mechanics modeling software},
	booktitle	=	{Parallel and Distributed Processing Symposium, IPDPS 2007},
	publisher	=	{IEEE},
	pages	=	{1--8},
	yerar	=	{2007},

}
@Article{dfm1,

	title	=	"Vectorized sparse matrix multiply for compressed row storage format",
	author	=	"E. F. D'Azevedo and M. R. Fahey and R. T. Mills",
	journal	=	"Lecture Notes in Computer Science",
	year	=	"2005",
	pages	=	"99--106",
	volume	=	"3514",
	lab	=	"ORNL"

}
@InProceedings{LaniQuintinoKimpeDeconinckVandewallePoedts05,

	author	=	"Andrea Lani and Tiago Quintino and Dries Kimpe and Herman Deconinck and Stefan Vandewalle and Stefaan Poedts",
	title	=	"The COOLFluiD Framework: Design Solutions for High Performance Object Oriented Scientific Computing Software",
	booktitle	=	"Computational Science ICCS 2005: 5th International Conference",
	year	=	"2005",
	note	=	"Lecture Notes in Computer Science",
	volume	=	"3514",
	publisher	=	"Springer-Verlag GmbH"

}
@InProceedings{dalcin-paz-storti,

	author	=	"L. Dalcin and R. Paz and M. Storti",
	title	=	"Desarrollo de Aplicaciones Paralelas en Python",
	booktitle	=	"Proceedings of *XIV Congress on Numerical Methods and its Applications (ENIEF). Bariloche, Argentina",
	year	=	"2004"

}
@Article{mpi-python,

	author	=	"L. Dalcin and R. Paz and M. Storti",
	title	=	"MPI for Python",
	journal	=	"Journal of Parallel and Distributed Computing",
	year	=	"2005"

}
@Unpublished{hrv02a,

	title	=	"{SLEPc}: Scalable Library for Eigenvalue Problem Computations",
	author	=	"V. Hernandex and J. E. Roman and V. Vidal",
	note	=	"Submited to VecPar 2002",
	year	=	2002

}
@mastersthesis{aarrestad-master,

	author	=	"Asbjorn Hoiland Aarrestad",
	title	=	"Time Dependent Solution of the Schrodinger Equation for Parallel Computers",
	school	=	"University of Bergen",
	month	=	"August",
	year	=	"2003",
	url	=	"http://www.parallab.uib.no/projects/molecul/matrix/",
	note	=	{Implemented Runge-Kutta methods using PETSc}

}
@phdthesis{kaushik-phd,

	author	=	"D. K. Kaushik",
	title	=	"Performance Modeling and Prediction for the Scalable Solution of Partial Differential Equations on Unstructured Grids",
	school	=	"Old Dominion University",
	month	=	"December",
	year	=	"2002",
	url	=	"http://www.mcs.anl.gov/\~{ }kaushik/Papers/thesis.ps"

}
@techreport{rb1,

	AUTHOR	=	"Rickard Bergstrom",
	TITLE	=	"Object Oriented Implementation of a General Finite Element Code",
	NUMBER	=	"2002-13",
	INSTITUTION	=	"Chalmers Finite Element Center, Chalmers University of Technology",
	YEAR	=	2002,
	url	=	"http://www.phi.chalmers.se/pub/preprints/pdf/phiprint-2002-13.pdf",
	note	=	"Discribes a finite element software package that uses PETSc for its solvers"

}
@InProceedings{dbl1,

	author	=	"Enzo A. Dari and Gustavo C. Buscaglia and Adrian J. Lew",
	title	=	"A Parallel General Purpose Finite Element System",
	booktitle	=	"IX SIAM Conference on Parallel Processing for Scientific Computing",
	publisher	=	"SIAM",
	year	=	"1999",
	url	=	"http://cabmec1.cnea.gov.ar/papers/apgpfes.ps.gz",
	note	=	"Describes software that uses PETSc for its parallel linear solves"

}
@Article{p1,

	title	=	"Parallel Components for PDEs and Optimization: Some Issues and Experiences",
	author	=	"B. Norris and S. Balay and S. Benson and L. Freitag and P. Hovland and L. McInnes and B. Smith",
	journal	=	"Parallel Computing",
	year	=	"2002",
	pages	=	"1811--1831",
	volume	=	"28 (12)"

}
@Article{Automatic-AD,

	AUTHOR	=	"Paul Hovland and Boyana Norris and Barry Smith",
	TITLE	=	"Making Automatic Differentiation Truly Automatic: Coupling {PETSc} with {ADIC}",
	YEAR	=	2005,
	journal	=	"Future Generation Computer Systems",
	volume	=	21,
	number	=	8,
	pages	=	"1426--1438"

}
@techreport{remote-math,

	author	=	"Elizabeth Dolan and Paul Hovland and Jorge Mor\'e and Boyana Norris and Barry Smith",
	title	=	"Remote Access to Mathematical Software",
	number	=	"ANL/MCS-P889-0601",
	institution	=	"Mathematics and Computer Science Division, Argonne National Laboratory",
	month	=	"June",
	year	=	"2001",
	url	=	"http://icm.mcs.kent.edu/research/iamc01proceedings.html"

}
@INPROCEEDINGS{gropp98,

	AUTHOR	=	"William D. Gropp",
	TITLE	=	"Exploiting Existing Software in Libraries: Successes, Failures, and Reasons Why",
	PUBLISHER	=	"SIAM",
	BOOKTITLE	=	"Proceedings of the SIAM Workshop on Object Oriented Methods for Inter-operable Scientific and Engineering Computing",
	year	=	1999,
	pages	=	"21-29"

}
@INPROCEEDINGS{knepleysarin8,

	AUTHOR	=	"Matthew Knepley and Vivek Sarin",
	TITLE	=	"Algorithm Development for Large Scale Computing",
	PUBLISHER	=	"SIAM",
	BOOKTITLE	=	"Proceedings of the SIAM Workshop on Object Oriented Methods for Inter-operable Scientific and Engineering Computing",
	year	=	1999

}
@INBOOK{bgms00,

	author	=	"S. Balay and W. D. Gropp and L. C. McInnes and B. F. Smith",
	chapter	=	"Software for the Scalable Solution of {PDEs}",
	url	=	"ftp://info.mcs.anl.gov/pub/tech_reports/reports/P834.ps.Z",
	title	=	"CRPC Handbook of Parallel Computing",
	editor	=	"J. Dongarra and I. Foster and G. Fox and B. Gropp and K. Kennedy and L. Torczon and A. White",
	publisher	=	"Morgan Kaufmann Publishers",
	year	=	2002

}
@INPROCEEDINGS{hovland_norris_smith98,

	AUTHOR	=	"Paul Hovland and Boyana Norris and Lucas Roh and Barry Smith",
	TITLE	=	"Developing a Derivative-Enhanced Object-Oriented Toolkit for Scientific Computations",
	PUBLISHER	=	"SIAM",
	BOOKTITLE	=	"Proceedings of the SIAM Workshop on Object Oriented Methods for Inter-operable Scientific and Engineering Computing",
	url	=	"ftp://info.mcs.anl.gov/pub/tech_reports/reports/P731.ps.Z",
	note	=	"also available as Argonne preprint ANL/MCS-P731-1098",
	year	=	1999,
	pages	=	"129-137"

}
@InProceedings{efficient,

	author	=	"Satish Balay and William D. Gropp and Lois Curfman McInnes and Barry F. Smith",
	title	=	"Efficient Management of Parallelism in Object Oriented Numerical Software Libraries",
	booktitle	=	"Modern Software Tools in Scientific Computing",
	editor	=	"E. Arge and A. M. Bruaset and H. P. Langtangen",
	publisher	=	"Birkhauser Press",
	pages	=	"163--202",
	year	=	1997,
	url	=	"ftp://info.mcs.anl.gov/pub/tech_reports/reports/P634.ps.Z"

}
@TechReport{petsc-user-ref,

	author	=	{Satish Balay and Kris Buschelman and Victor Eijkhout and William~D. Gropp and Dinesh Kaushik and Matthew~G. Knepley and Lois Curfman McInnes and Barry~F. Smith and Hong Zhang},
	title	=	{{PETS}c Users Manual},
	institution	=	{Argonne National Laboratory},
	year	=	2009,
	number	=	{ANL-95/11 - Revision 3.0.0},
	url	=	{http://www.mcs.anl.gov/petsc/docs}

}
@TechReport{petsc-user-ref-polish,

	Author	=	"Marcin Bojko and Piotr Krzyzanowski",
	Title	=	"Rozwiazywanie ukladow rownan przy pomocy pakietu PETSc",
	Institution	=	"Instytut Matematyki, Stosowanej i Mechaniki, Uniwersytet Warszawski",
	Year	=	1998,
	note	=	"An introduction to PETSc in Polish"

}
@inproceedings{abghmn00,

	title	=	"Integrating Automatic Differentiation with Object-Oriented Toolkits for High-Performance Scientific Computing",
	author	=	"J. Abate and S. Benson and L. Grignon and P. Hovland and L. C. McInnes and B. Norris",
	url	=	"ftp://info.mcs.anl.gov/pub/tech_reports/reports/P820.ps.Z",
	booktitle	=	"Automatic Differentiation of Algorithms: From Simulation to Optimization",
	editor	=	{George Corliss and Christ\`{e}le Faure and Andreas Griewank and Laurent Hasco\"{e}t and Uwe Naumann},
	publisher	=	"Springer",
	year	=	"2002"

}
@Unpublished{petsc-mpi-paper,

	Author	=	"Lois Curfman McInnes and Barry F. Smith",
	Title	=	"{PETS}c 2.0: A Case Study of Using {MPI} to Develop Numerical Software Libraries",
	Note	=	"Proceedings of the MPI Developers Conference, Notre Dame, IN",
	Month	=	Jun,
	Year	=	"1995"

}
@INPROCEEDINGS{miss-paper,

	AUTHOR	=	"William D. Gropp and Barry F. Smith",
	TITLE	=	"Scalable, Extensible, and Portable Numerical Libraries",
	PUBLISHER	=	"IEEE",
	YEAR	=	"1994",
	BOOKTITLE	=	"Proceedings of the Scalable Parallel Libraries Conference",
	ADDRESS	=	"Mississippi State University",
	pages	=	"87--93",
	keyword	=	"numerical libraries, scientific computing, parallel computing"

}
@INPROCEEDINGS{snes-paper,

	AUTHOR	=	"William D. Gropp and Lois Curfman McInnes and Barry F. Smith",
	TITLE	=	"Scalable Libraries for Solving Systems of Nonlinear Equations and Unconstrained Minimization Problems",
	PUBLISHER	=	"IEEE",
	YEAR	=	"1995",
	BOOKTITLE	=	"Proceedings of the Scalable Parallel Libraries Conference",
	ADDRESS	=	"Mississippi State University",
	pages	=	"60-67",
	keyword	=	"nonlinear equations, optimization, superconductivity, parallel computing"

}
@Article{dsneutral,

	Author	=	"Barry F. Smith and William D. Gropp",
	Title	=	"The Design of Data-structure-neutral Libraries for the Iterative Solution of Sparse Linear Systems",
	Year	=	1996,
	Journal	=	"Scientific Programming",
	Volume	=	5,
	pages	=	"329--336",
	Key	=	"GroppSmith96 ! KSP design"

}
@inproceedings{bgms98,

	author	=	"Satish Balay and William D. Gropp and Lois Curfman McInnes and Barry F. Smith",
	title	=	"A Microkernel Design for Component-based Parallel Numerical Software Systems",
	booktitle	=	"Proceedings of the SIAM Workshop on Object Oriented Methods for Inter-operable Scientific and Engineering Computing",
	publisher	=	"SIAM",
	pages	=	"58-67",
	note	=	"also available as Argonne preprint ANL/MCS-P727-0998",
	url	=	"ftp://info.mcs.anl.gov/pub/tech_reports/reports/P727.ps.Z",
	year	=	"1998"

}
@Article{hkm98,

	author	=	"M. E. Hayder and D. E. Keyes and P. Mehrotra",
	title	=	"A Comparison of the {PETSc} Library and {HPF} Implementations of an Archetypal {PDE} Computation",
	journal	=	"Advances in Engineering Software",
	volume	=	29,
	pages	=	"415-424",
	year	=	1998

}
@techreport{pdpta99,

	AUTHOR	=	"L. A. Freitag and W. D. Gropp and P. D. Hovland and L. C. McInnes and B. F. Smith",
	TITLE	=	"Infrastructure and Interfaces for Large-Scale Numerical Software",
	note	=	"to appear in the Proceedings of the 1999 International Conference on Parallel and Distributed Processing Techniques and Applications, June 28 - July 1, 1999, Las Vegas, Nevada",
	institution	=	"Mathematics and Computer Science Division, Argonne National Laboratory",
	url	=	"ftp://info.mcs.anl.gov/pub/tech_reports/reports/P751.ps.Z",
	number	=	"ANL/MCS-P751-0599",
	year	=	1999

}
@inproceedings{bbh:com,

	author	=	"C. H. Bischof and H. M. B{\"u}cker and P. D. Hovland",
	title	=	"{On Combining Computational Differentiation and Toolkits for Parallel Scientific Computing}",
	booktitle	=	"Euro-Par 2000 -- Parallel Processing, Proceedings of the 6th International Euro-Par Conference, Munich, Germany, August/September 2000",
	year	=	2000,
	editor	=	"A. Bode and T. Ludwig and W. Karl and R. Wism{\"u}ller",
	volume	=	"1900",
	series	=	"Lecture Notes in Computer Science",
	pages	=	"86--94",
	address	=	"Berlin",
	publisher	=	"Springer",
	url	=	"ftp://info.mcs.anl.gov/pub/tech_reports/reports/P797.ps.Z"

}

@inproceedings{overture00,

	author	=	"K. R. Buschelman and W. D. Gropp and L. C. McInnes and B. F. Smith",
	title	=	" {PETSc and Overture}: Lessons Learned Developing an Interface between Components",
	url	=	"ftp://info.mcs.anl.gov/pub/tech_reports/reports/P858.ps.Z",
	booktitle	=	"Proceedings of the International Federation for Information Processing Working Conference on Software Architectures for Scientific Computing, Kluwer",
	year	=	"2000",
	pages	=	"57--68"

}
@techreport{smith97,

	title	=	"An Interface for Efficient Vector Scatters and Gathers on Parallel Machines",
	url	=	"ftp://info.mcs.anl.gov/pub/tech_reports/reports/P701.ps.Z",
	number	=	"ANL/MCS-P701",
	author	=	"Barry F. Smith",
	Institution	=	"Mathematics and Computer Science Division, Argonne National Laboratory"

}
@Article{smith98,

	author	=	"Barry Smith",
	title	=	"The Transition of Numerical Software: From Nuts-and-Bolts to Abstraction",
	journal	=	"SIGNUM Newsletter",
	year	=	"1998",
	url	=	"ftp://info.mcs.anl.gov/pub/tech_reports/reports/P712.ps.Z"

}
@techreport{AD-PETSC-TM,

	title	=	"Using {ADIFOR} and {ADIC} to Provide a {J}acobian for the {SNES} Component of {PETSc}",
	author	=	"Christian Bischof and Paul Hovland and Po-Ting Wu",
	year	=	1997,
	type	=	"Technical Memorandum",
	institution	=	"ANL",
	url	=	"ftp://info.mcs.anl.gov/pub/tech_reports/reports/TM233.ps.Z",
	number	=	"ANL/MCS-TM-233"

}
%
%

Algorithm design and analysis

%
@Article{bjm2005,

	author	=	{AH Baker and ER Jessup and T Manteuffel},
	title	=	{A Technique for Accelerating the Convergence of Restarted GMRES},
	journal	=	{SIAM JOURNAL ON MATRIX ANALYSIS AND APPLICATIONS},
	year	=	{2005}

}
@unpublished{Sundar-2008a,

	author	=	{R.S. Sampath and G. Biros},
	title	=	{A parallel geometric multigrid method for finite elements on octree meshes},
	URL	=	{http://www.seas.upenn.edu/\~{ }rahulss}

}
@Article{Sundar-2008,

	author	=	{H. Sundar and R.S. Sampath and G. Biros},
	title	=	{Bottom-up construction and 2:1 balance refinement of linear octrees in parallel},
	journal	=	{SIAM Journal on Scientific Computing},
	year	=	{2008},
	URL	=	{http://www.seas.upenn.edu/\~{ }rahulss}

}
@InProceedings{Sundar-2007,

	author	=	{H. Sundar and R.S. Sampath and S.S. Adavani and C. Davatzikos and G. Biros},
	title	=	{Low-constant parallel algorithms for finite element simulations using linear octrees},
	booktitle	=	{SC'07: ACM/IEEE Conference on Supercomputing},
	year	=	{2007},
	URL	=	{http://www.seas.upenn.edu/\~{ }rahulss}

}
@InProceedings{Adams-98a,

	author	=	{Adams, Mark ~F.},
	title	=	{A Parallel Maximal Independent Set Algorithm},
	booktitle	=	{Proceedings 5th copper mountain conference on iterative methods},
	year	=	{1998}

}
@InBook{04,

	author	=	{V. Akcelik and G. Biros and Omar Ghattas and J. Hill and David Keyes and B. van Bloemen Waanders},
	editor	=	{M. Heroux and P. Raghaven and H. Simon,},
	title	=	{Frontiers of Parallel Computing},
	chapter	=	{Parallel algorithms for PDE-constrained optimization},
	publisher	=	{SIAM},
	year	=	{2006}

}
@Article{dt,

	author	=	"Matthew F. Dixon and C. J. Kenneth Tan",
	title	=	"Using Distributed Computers to Deterministically Approximate Higher Dimensional Convection Diffusion Equations",
	journal	=	"The Journal of Supercomputing",
	year	=	"2004",
	pages	=	"235--253",
	volume	=	28,
	url	=	"http://www.springerlink.com/(nekina45nmdgrib5izizn3ip)/app/home/contribution.asp?referrer=parent&backto=issue,8,8;journal,20,73;linkingpublicationresults,1:100302,1"

}
@phdthesis{hwang2004,

	author	=	{Feng-Nan Hwang},
	title	=	"Some Parallel Linear and Nonlinear {Schwarz} Methods with Applications in Computational Fluid Dynamics",
	school	=	{University of Colorado at Boulder},
	year	=	2004

}
@phdthesis{baker,

	author	=	{{A. H.} Baker},
	title	=	"On improving the performance of the linear solver restarted {GMRES}",
	school	=	{University of Colorado at Boulder},
	year	=	2003

}
@INPROCEEDINGS{kimn-bourdin-05,

	title	=	"Numerical Implementation of Overlapping Balancing Domain Decomposition Methods on Unstructured Meshes",
	author	=	"Jung-Han Kimn and Blaise Bourdin",
	BOOKTITLE	=	"Proceedings of the 16th International Conference on Domain Decomposition Methods",
	URL	=	"http://www.cims.nyu.edu/dd16/proceedings/kimn_bourdin_mini_6.pdf",
	YEAR	=	"2005"

}
@techreport{KlawonnRheinbach601,

	author	=	"Axel Klawonn and Oliver Rheinbach",
	title	=	{A Parallel Implementation of Dual-Primal FETI-DP Methods for Three Dimensional Linear Elasticity Using a Transformation of Basis},
	institution	=	{Universit\"at Duisburg-Essen},
	year	=	2005,
	type	=	"Technical Report",
	number	=	"SM-E-601"

}
@techreport{KlawonnRheinbach609,

	author	=	"Axel Klawonn and Oliver Rheinbach",
	title	=	{Inexact FETI-DP Methods},
	institution	=	{Universit\"at Duisburg-Essen},
	year	=	2005,
	type	=	"Technical Report",
	number	=	"SM-E-609"

}
@techreport{KlawonnRheinbach607,

	author	=	"Axel Klawonn and Oliver Rheinbach",
	title	=	{Robust FETI-DP Methods for Heterogeneous Three Dimensional Elasticity Problems},
	institution	=	{Universit\"at Duisburg-Essen},
	year	=	2005,
	type	=	"Technical Report",
	number	=	"SM-E-607"

}
@Article{kul-natraj-pbp,

	author	=	{Kshitij Kulshreshtha and Neela Nataraj and Michael Jung},
	title	=	{Performance of a parallel mixed finite element implementation for fourth order clamped anisotropic plate bending problems in distributed memory environments},
	journal	=	{Applied Mathematics and Computation},
	volume	=	{155},
	year	=	{2004},
	number	=	3,
	pages	=	{753--777}

}
@techreport{04-04,

	author	=	"F. D. Bramkamp and H. M. B{\"u}cker and A. Rasch",
	title	=	"{Using Exact {J}acobians in an Implicit {N}ewton-{K}rylov Method}",
	institution	=	"RWTH Aachen University",
	year	=	2004,
	type	=	"Preprint of the Institute for Scientific Computing",
	number	=	"RWTH--CS--SC--04--04",
	address	=	"Aachen",

}
@Article{shahbazi1,

	author	=	{Khosro Shahbazi},
	title	=	{An explicit expression for the penalty parameter of the interior penalty method},
	journal	=	{Journal of Computational Physics},
	volume	=	{205},
	year	=	{2005},
	pages	=	{401--407}

}
@techreport{kk,

	title	=	"A Parallel Lanczos Algorithm for Eigensystem Calculation",
	author	=	"Hans-Peter Kersken and Uwe Kuster",
	year	=	1999,
	institution	=	"University of Stuttgart",
	url	=	"http://elib.uni-stuttgart.de/opus/volltexte/1999/310/pdf/310.pdf",
	number	=	"310"

}
@Article{miha-mija,

	author	=	{M. D. Mihajlovi and S. Mijalkovi},
	title	=	{A component decomposition preconditioning for 3D stress analysis problems},
	journal	=	{Numerical Linear Algebra with Applications},
	volume	=	{9},
	year	=	{2002},
	pages	=	{567--583},
	url	=	{http://www3.interscience.wiley.com/cgi-bin/abstract/98516459/ABSTRACT}

}
@Article{bjm,

	author	=	"M Benzi and W Joubert and G Mateescu",
	journal	=	"Electronic Transactions on Numerical Analysis",
	year	=	"1999",
	volume	=	"8",
	pages	=	"88--114",
	title	=	"Numerical experiments with parallel orderings for ILU preconditioners",
	url	=	"http://scholar.google.com/url?sa=U&q=http://emis.bibl.cwi.nl/journals/ETNA/vol.8.1999/pp88-114.dir/pp88-114.ps"

}
@phdthesis{hyde,

	author	=	{EMK Hyde},
	title	=	"Fast, High-Order Methods for Scattering by Inhomogeneous Media",
	school	=	{Caltech},
	year	=	2003,
	url	=	"http://www.acm.caltech.edu/\~{ }bruno/02hyde_thesis_print.pdf"

}
@Article{km2003,

	author	=	"A. Keese and H. G. Matthies",
	journal	=	"Proceedings in Applied Mathematics and Mechanics",
	year	=	"2003",
	volume	=	"2",
	pages	=	"485--486",
	title	=	"Parallel Solution of Stochastic PDEs",
	url	=	"http://www3.interscience.wiley.com/cgi-bin/abstract/104087421/ABSTRACT"

}
@Article{whszss,

	author	=	"Joachim Weickert and Josef Heers and Christoph Schnorr and Karel J. Zuiderveld and Otmar Scherzer and H. Siegfried Stiehl",
	journal	=	"Real Time Imaging",
	year	=	"2001",
	volume	=	"7",
	pages	=	"31--45",
	title	=	"Fast parallel algorithms for a broad class of nonlinear variational diffusion approaches",
	url	=	"http://www.mia.uni-saarland.de/weickert/Papers/TR_5_99.ps.gz"

}
@techreport{baker1,

	title	=	"An Efficient Block Variant of GMRES",
	author	=	"A. H. Baker and J. M. Dennis and E. R. Jessup",
	year	=	2003,
	type	=	"Technical Report",
	institution	=	"University of Colorado, Boulder",
	url	=	"http://www.scd.ucar.edu/css/staff/dennis/papers/block.pdf",
	number	=	"CU-CS-957-03"

}
@INPROCEEDINGS{mc2003,

	AUTHOR	=	"Leszek Marcinkowski and Xiao-Chuan Cai",
	TITLE	=	"Parallel Performance of Some Two-Level {ASPIN} Algorithms",
	BOOKTITLE	=	"Proceedings of the 15th International Conference on Domain Decomposition Methods",
	PAGES	=	"639--646",
	PUBLISHER	=	"Springer, Lecture Notes in Computational Science and Engineering (LNCSE).",
	NOTE	=	"",
	URL	=	"http://www.ddm.org/DD15/proceedings-dd15.html",
	YEAR	=	"2003"

}
@INPROCEEDINGS{kt2003,

	AUTHOR	=	"Deepak V. Kulkarni and Daniel A. Tortorelli",
	TITLE	=	"A Domain Decomposition Based Two-Level Newton Scheme for Nonlinear Problems",
	BOOKTITLE	=	"Proceedings of the 15th International Conference on Domain Decomposition Methods",
	PAGES	=	"615--622",
	PUBLISHER	=	"Springer, Lecture Notes in Computational Science and Engineering (LNCSE).",
	NOTE	=	"",
	URL	=	"http://www.ddm.org/DD15/proceedings-dd15.html",
	YEAR	=	"2003"

}
@INPROCEEDINGS{krw2003,

	AUTHOR	=	"Axel Klawonn and Oliver Rheinbach and Olof B. Widlund",
	TITLE	=	"Some Computational Results for Dual-Primal FETI Methods for Elliptic Problems in 3D",
	BOOKTITLE	=	"Proceedings of the 15th International Conference on Domain Decomposition Methods",
	PAGES	=	"361--368",
	PUBLISHER	=	"Springer, Lecture Notes in Computational Science and Engineering (LNCSE).",
	NOTE	=	"",
	URL	=	"http://www.ddm.org/DD15/proceedings-dd15.html",
	YEAR	=	"2003"

}
@INPROCEEDINGS{hc2003,

	AUTHOR	=	"Feng-Nan Hwang and Xiao-Chuan Cai",
	TITLE	=	"Improving Robustness and Parallel Scalability of {Newton's} Method Through Nonlinear Preconditioning",
	BOOKTITLE	=	"Proceedings of the 15th International Conference on Domain Decomposition Methods",
	PAGES	=	"201--208",
	PUBLISHER	=	"Springer, Lecture Notes in Computational Science and Engineering (LNCSE).",
	NOTE	=	"",
	URL	=	"http://www.ddm.org/DD15/proceedings-dd15.html",
	YEAR	=	"2003"

}
@INPROCEEDINGS{g2003,

	AUTHOR	=	"P. Goldfeld",
	TITLE	=	"Balancing Neumann-Neumann for (In)Compressible Linear Elasticity and (Generalized) Stokes and Parallel Implementation",
	BOOKTITLE	=	"Proceedings of the 14th International Conference on Domain Decomposition Methods",
	PAGES	=	"209--216",
	EDITOR	=	"I. Herrera and D. Keyes and O. Widlund and R. Yates",
	PUBLISHER	=	"National Autonomous University of Mexico (UNAM)",
	NOTE	=	"",
	URL	=	"http://www.ddm.org/DD14",
	YEAR	=	"2003"

}
@INPROCEEDINGS{dhv2003,

	AUTHOR	=	"Zdenek Dostal and David Horak and Oldrich Vlach",
	TITLE	=	"Toward scalable FETI algorithm for variational inequalities with applications to composites",
	BOOKTITLE	=	"Proceedings of the 14th International Conference on Domain Decomposition Methods",
	PAGES	=	"395--401",
	EDITOR	=	"I. Herrera and D. Keyes and O. Widlund and R. Yates",
	PUBLISHER	=	"National Autonomous University of Mexico (UNAM)",
	NOTE	=	"",
	URL	=	"http://www.ddm.org/DD14",
	YEAR	=	"2003"

}
@INPROCEEDINGS{dhsv2002,

	AUTHOR	=	"Zdenek Dostal and David Horak and Jan Szweda and Vit Vondrak",
	TITLE	=	"Scalabilities of FETI for variational inequalities and contact shape optimization",
	BOOKTITLE	=	"Proceedings of the 13th International Conference on Domain Decomposition Methods",
	PAGES	=	"359--367",
	EDITOR	=	"N. Debit and M.Garbey and R. Hoppe and J. Periaux and D. Keyes and Y. Kuznetsov",
	PUBLISHER	=	"CIMNE, Barcelona, Spain",
	NOTE	=	"",
	URL	=	"http://www.ddm.org/DD13",
	YEAR	=	"2002"

}
@INPROCEEDINGS{cky2002,

	AUTHOR	=	"Xiao-Chuan Cai and David E. Keyes and David P. Young",
	TITLE	=	"A Nonlinear Additive Schwarz Preconditioned Inexact Newton Method for Shocked Duct Flows",
	BOOKTITLE	=	"Proceedings of the 13th International Conference on Domain Decomposition Methods",
	PAGES	=	"343--350",
	EDITOR	=	"N. Debit and M.Garbey and R. Hoppe and J. Periaux and D. Keyes and Y. Kuznetsov",
	PUBLISHER	=	"CIMNE, Barcelona, Spain",
	NOTE	=	"",
	URL	=	"http://www.ddm.org/DD13",
	YEAR	=	"2002"

}
@CONFERENCE{li-etal:03,

	AUTHOR	=	{Li, Z. and Lanteri S. and Saad, Y.},
	TITLE	=	{Multiplicative-additive preconditioning combination for general sparse linear systems},
	BOOKTITLE	=	{2003 International Conference on Preconditioning Techniques for Large Sparse Matrix Problems in Scientific and Industrial Applications},
	ADDRESS	=	{Napa, California, USA},
	DATE	=	{october 27-29},
	YEAR	=	{2003}

}
@inproceedings{ff2003,

	author	=	"Abul K. M. Fahimuddin and Heike Fassbender",
	title	=	"Model Reduction for Large Scale Applications in Microsystem Technology",
	booktitle	=	"Proceedings of the 2004 SIAM Parallel Processing Conference",
	YEAR	=	"2003"

}
@inproceedings{ly2003,

	author	=	"Lexing Ying and G. Biros and D. Zorin and H. Langston",
	title	=	"A New Parallel Kernel-independent Fast Multipole Method",
	booktitle	=	"Proceedings of the ACM/IEEE conference on Supercomputing 2003",
	YEAR	=	"2003",
	note	=	"Winner of the the Best Student Paper at SC2003"

}
@inproceedings{d2b2004,

	author	=	"Masoud Darbandi and Gerry E. Schneider and Seyed Mehi Bostandoost",
	title	=	"Parallel Computation of a Fully Implicit Finite Volume Method Using Different Ordering Strategies",
	booktitle	=	"Proceedings of AIAA Conference, Reno, Nevada",
	YEAR	=	"2004"

}
@inproceedings{d2v2005,

	author	=	"Masoud Darbandi and Gerry E. Schneider and Soheyl Vakili",
	title	=	"A Comparative Study of Preconditioned Methods for Solving Fully Coupled Fluid Flow Equations",
	booktitle	=	"The 13th Annual Conference on Computational Fluid Dynamics",
	YEAR	=	"2005"

}
@inproceedings{dvs2006,

	author	=	"Masoud Darbandi and Soheyl Vakili and Gerry E. Schneider",
	title	=	"The Employment of Algebraic Multigrid as a Preconditioner to Solve Fully Implicit Mixed Convection Equations",
	booktitle	=	" The 44th AIAA Aerospace Sciences Meeting and Exhibit",
	YEAR	=	"2006"

}
@Article{dsv2006,

	author	=	"Masoud Darbandi and Gerry E. Schneider and Soheyl Vakili",
	title	=	"Using Different Preconditioned Krylov Subspace Methods to Solve Coupled Fluid Flow Equations",
	journal	=	"Computational Fluid Dynamics",
	year	=	"2006",
	volume	=	15,
	number	=	1

}
@Article{Lahaye03,

	author	=	"Lahaye, D. and Vandewalle, S. and Hameyer, K.",
	title	=	"An Algebraic Multilevel Preconditioner for Field-Circuit Coupled Problems",
	journal	=	"J. Comput. Appl. Math.",
	year	=	"2004",
	pages	=	"267--275",
	volume	=	168

}
@techreport{brmn,

	title	=	"Faster {PDE}-based Simulations Using Robust Composite Linear Solvers",
	author	=	"S. Bhowmick and P. Raghavan and L. McInnes and B. Norris",
	year	=	2002,
	type	=	"Technical Report",
	institution	=	{ANL},
	number	=	"ANL/MCS-P993-0902",
	note	=	"To appear in Future Generation Computer Systems"

}
@inproceedings{mnbr,

	author	=	"L. McInnes and B. Norris and S. Bhowmick and P. Raghavan",
	title	=	"Adaptive Sparse Linear Solvers for Implicit {CFD} Using {Newton-Krylov} Algorithms",
	booktitle	=	"Proceedings of the Second MIT Conference on Computational Fluid and Solid Mechanics",
	YEAR	=	"2003",

}
@inproceedings{bmnr,

	author	=	"S. Bhowmick and L. McInnes and B. Norris and P. Raghavan",
	title	=	"The Role of Multi-Method Linear Solvers in {PDE}-based Simulations",
	booktitle	=	"Proceedings of the 2003 International Conference on Computational Science and its Applications, Lecture notes in Computer Science 2677",
	editor	=	"V. Kumar and M. L. Gavrilova and C. J. K. Tan and P. L'Ecuyer",
	pages	=	"828--839",
	YEAR	=	"2003",

}
@Article{ph03,

	author	=	"M. Pernice and R. D. Hornung",
	title	=	"Newton-Krylov-FAC Methods for Problems Discretized on Locally Refined Grids",
	journal	=	"Computing and Visualization in Science",
	year	=	"2003",
	Lab	=	{LANL}

}
@unpublished{Adams-02,

	author	=	{Adams, M. F. and Brezina, M. and Hu, J. J. and Tuminaro, R. S.},
	title	=	{Parallel multigrid smoothing: polynomial versus {G}auss-{S}eidel},
	note	=	{Submitted to JCP},
	URL	=	{http://www.cs.berkeley.edu/\~{ }madams/poly.ps}

}
@PhdThesis{Els01,

	author	=	{Ulrich Elsner},
	title	=	{Static and Dynamic Graph Partitioning. A comparative study of existing algorithms},
	school	=	{Technical University Chemnitz},
	year	=	2002,
	publisher	=	{Logos Verlag, Berlin},
	ISBN	=	{3-89722-923-4},
	annote	=	{Uses PETSc's high quality parallel algorithms to provide a framework to compare different graph partitioning algorithms}

}
@techreport{ckk02,

	title	=	"Pseudo-Transient Continuation and Differential-Algebraic Equations",
	author	=	"Todd S. Coffey and C. T. Kelley and David E. Keyes",
	year	=	2002,
	type	=	"Technical Report",
	institution	=	{ODU},
	url	=	"http://www.math.odu.edu/\~{ }keyes",
	note	=	"Submitted to the special issue of the SIAM Journal of Scientific Computing dedicated to papers from the 2002 Copper Mountain Conference on Iterative Methods"

}
@Article{gpw2002,

	title	=	"Balancing Neumann-Neumann Preconditioners for Mixed Approximations of Heterogeneous Problems in Linear Elasticity",
	author	=	"Paulo Goldfeld and Luca F. Pavarino and Olof B. Widlund",
	year	=	2003,
	pages	=	"283--324",
	volume	=	95,
	url	=	"http://www.cs.nyu.edu/csweb/Research/TechReports/TR2002-825/TR2002-825.pdf",
	journal	=	"Numerische Mathematik"

}
@Article{dh1,

	title	=	"Scalability and FETI based algorithm for large discretized variational inequalities",
	author	=	"Z Dostal and D Horak",
	year	=	2003,
	pages	=	"347--357",
	volume	=	61,
	url	=	"http://portal.acm.org/citation.cfm?id=770222.770239",
	journal	=	"Mathematics and Computers in Simulation"

}
@inproceedings{dhsv1,

	author	=	"Zdenek Dostal and David Horak and Jan Szweda and Vit Vondrak",
	url	=	"http://cdcsp.univ-lyon1.fr/\~{ }dd13/DD13proc/Dostal.pdf",
	title	=	"36 Scalabilities of FETI for Variational Inequalities and Contact Shape Optimization",
	booktitle	=	"Proceedings of the 13th International Conference on Domain Decomposition Methods",
	editor	=	" N. Debit and M. Garbey and R. Hoppe and J. Periaus and D. Keyes and Y. Kuznetsov"

}
@Article{Lahaye02,

	author	=	"Domenico Lahaye and S. Vandewalle and K. Hameyer",
	title	=	"An Algebraic Multilevel Preconditioner for Field-Circuit Coupled Problems",
	journal	=	"IEEEMAGN",
	year	=	"2002",
	volume	=	"38",
	number	=	"2",
	pages	=	"413-416"

}
@article{ckm01,

	author	=	"X.-C. Cai and D. E. Keyes and L. Marcinkowski",
	url	=	"http://www.cs.colorado.edu/homes/cai/public_html/papers/10page.ps",
	title	=	"Nonlinear additive {Schwarz} preconditioners and applications in computational fluid dynamics",
	journal	=	"International Journal of Numerical Methods in Fluid Mechanics",
	year	=	2002,
	volume	=	40,
	pages	=	"1463--1470"

}
@inproceedings{cky01,

	author	=	"X.-C. Cai and D. E. Keyes and D. P. Young",
	url	=	"http://www.cs.colorado.edu/homes/cai/public_html/papers/dd13_1d.ps",
	title	=	"A nonlinear additive {Schwarz} preconditioned inexact {Newton} method for shocked duct flow",
	booktitle	=	"Proceedings of the 13th International Conference on Domain Decomposition Methods",
	editor	=	" N. Debit and M. Garbey and R. Hoppe and J. Periaus and D. Keyes and Y. Kuznetsov",
	year	=	2002

}
@article{ck02,

	author	=	"X.-C. Cai and D. E. Keyes",
	url	=	"http://www.cs.colorado.edu/homes/cai/public_html/papers/aspin.ps",
	title	=	"Nonlinearly preconditioned inexact {Newton} algorithms",
	journal	=	"SIAM J. Sci. Comput.",
	year	=	"2002",
	pages	=	"183--200",
	volume	=	"24"

}
@article{c04,

	author	=	"Feng-Nan Hwang and X.-C. Cai",
	url	=	"http://amath.colorado.edu/student/hwangf/papers/one-level-aspin.pdf",
	title	=	"A parallel nonlinear additive {Schwarz} preconditioned inexact {Newton} algorithm for incompressible {Navier-Stokes} equations",
	journal	=	"Journal of Computational Physics",
	year	=	2005,
	volume	=	204,
	pages	=	"666--691"

}
@article{hc06,

	author	=	"Feng-Nan Hwang and X.-C. Cai",
	url	=	"http://www.cs.colorado.edu/\~{ }cai/papers/aspin2_06.pdf",
	title	=	"A Class of Parallel Two-Level Nonlinear {Schwarz} Preconditioned Inexact {Newton} Algorithms",
	journal	=	"Computer Methods in Applied Mechanics and Engineering",
	year	=	2006,
	volume	=	196,
	pages	=	"1603--1611"

}
@InProceedings{Adams-01,

	author	=	{Mark F. Adams},
	title	=	{A Distributed Memory Unstructured {G}auss-{S}eidel Algorithm for Multigrid Smoothers},
	booktitle	=	{ACM/IEEE Proceedings of SC2001: High Performance Networking and Computing},
	address	=	{Denver, Colorado},
	month	=	{November},
	year	=	{2001}

}
@BOOK{1dl,

	AUTHOR	=	"Domenico Lahaye",
	TITLE	=	"Algebraic Multigrid for Two Dimensional Time-Harmonic Magnetic Field Computations",
	YEAR	=	"2001",
	PUBLISHER	=	"Katholieke Universiteit Leuven",
	NOTES	=	"Thesis"

}
@Article{Adams-00a,

	author	=	{Mark F. Adams},
	title	=	{Evaluation of Three Unstructured Multigrid Methods on 3{D} Finite Element Problems in Solid Mechanics},
	journal	=	{International Journal for Numerical Methods in Engineering},
	year	=	{To Appear},
	url	=	"http://www.cs.berkeley.edu/\~{ }madams/amg.ps"

}
@Article{Lahaye00,

	author	=	"Domenico Lahaye and De Gersem, H. and Vandewalle, S. and Hameyer, K.",
	title	=	"Algebraic Multigrid for Complex Symmetric Systems",
	journal	=	"IEEEMAGN",
	year	=	"2000",
	volume	=	"36",
	number	=	"4",
	pages	=	"1535--1538",

}
@Article{Adams-00b,

	author	=	{Mark F. Adams},
	title	=	{Parallel Multigrid Solvers for 3D Unstructured Finite Element Problems in Large Deformation Elasticity and Plasticity},
	journal	=	{International Journal for Numerical Methods in Engineering},
	year	=	{2000},
	volume	=	{48},
	number	=	{8},
	pages	=	{1241-1262},
	url	=	"http://www.cs.berkeley.edu/\~{ }madams/NMEMFA.ps",

}
@InProceedings{Adams-99c,

	author	=	{Mark F. Adams and J. Demmel},
	title	=	{Parallel Multigrid Solver Algorithms and Implementations for 3{D} Unstructured Finite Element Problems},
	booktitle	=	{Proceedings of SC99: High Performance Networking and Computing},
	address	=	{Portland, Oregon},
	month	=	{November},
	url	=	"http://www.cs.berkeley.edu/\~{ }madams/sc99.ps",
	year	=	{1999}

}
@Article{chan95,

	author	=	"T. Chan and B. Smith and J. Zou",
	title	=	"Overlapping {S}chwarz Methods on Unstructured Meshes using Non-matching Coarse Grids",
	journal	=	"Numer. Math.",
	year	=	"1995",
	volume	=	"73",
	pages	=	"149--167"

}
@TechReport{Adams-CSD-98-993,

	pages	=	"11",
	year	=	"1998",
	type	=	"Technical Report",
	number	=	"CSD-98-993",
	institution	=	"University of California, Berkeley",
	title	=	"A Parallel Maximal Independent Set Algorithm",
	bibdate	=	"March 11, 1998",
	author	=	"Mark F. Adams and James Demmel",
	abstract	=	"The parallel construction of maximal independent sets is a useful building block for many algorithms in the computational sciences, including graph coloring and multigrid coarse grid creation on unstructured meshes. We present an efficient asynchronous maximal independent set algorithm for use on parallel computers, for ``well partitioned'' graphs, that arise from finite element (FE) models. For appropriately partitioned bounded degree graphs, it is shown that the running time of our algorithm under the P-RAM computational model is of $O(1)$, which is an improvement over the previous best P-RAM complexity for this class of graphs. We present numerical experiments on an IBM SP, that confirm our P-RAM complexity model is indicative of the performance one can expect with practical partitions on graphs from FE problems.",
	url	=	"http://www.cs.berkeley.edu/\~{ }madams/pmis.ps",
	month	=	mar # " 11,",

}
@TechReport{k676,

	year	=	"1994",
	type	=	"Technical Report",
	number	=	"TR1994-676",
	institution	=	"New York University",
	title	=	"An Optimal Preconditioner for a Class of Saddle Point Problems with a Penalty Term",
	author	=	"Axel Klawonn",
	url	=	"http://www.cs.nyu.edu/csweb/Research/TechReports/TR1994-676/TR1994-676.pdf"

}
@BOOK{ak1,

	AUTHOR	=	"Axel Klawonn",
	TITLE	=	"Preconditioners for Indefinite Problems",
	YEAR	=	"1995",
	PUBLISHER	=	"Westfalishen Wilhelms-Universitat Munster",
	url	=	"http://www.cs.nyu.edu/csweb/Research/TechReports/TR1996-716/TR1996-716.pdf",
	NOTES	=	"Thesis"

}
@TechReport{KirbyKnepleyScott04,

	pages	=	"14",
	year	=	"2004",
	type	=	"Technical Report",
	number	=	"TR-2004-04",
	institution	=	"University of Chicago",
	title	=	"Optimal Evaluation of Finite Element Matrices",
	author	=	"Robert C. Kirby and Matthew G. Knepley and L. Ridgway Scott",
	abstract	=	"",
	url	=	"http://www.cs.uchicago.edu/research/publications/techreports/TR-2004-04",
	month	=	"May"

}

@TechReport{KnepleyKarpeev05,

	pages	=	"41",
	year	=	"2005",
	type	=	"Technical Report",
	number	=	"ANL/MCS-P1295-1005",
	institution	=	"Argonne National Laboratory",
	title	=	"Flexible Representation of Computational Meshes",
	author	=	"Matthew G. Knepley and Dmitry A. Karpeev",
	abstract	=	"",
	url	=	"ftp://info.mcs.anl.gov/pub/tech_reports/reports/P1295.pdf",
	month	=	"October"

}

@TechReport{KnepleyKarpeev07A,

	pages	=	"14",
	year	=	"2007",
	type	=	"Technical Report",
	number	=	"ANL/MCS-P1455-0907",
	institution	=	"Argonne National Laboratory",
	title	=	"Mesh Algorithms for {PDE} with {Sieve} {I}: {Mesh} Distribution",
	author	=	"Matthew G. Knepley and Dmitry A. Karpeev",
	abstract	=	"",
	url	=	"ftp://info.mcs.anl.gov/pub/tech_reports/reports/P1455.pdf",
	month	=	"February"

}

@article{KnepleyKarpeev09,

	author	=	{Matthew G. Knepley and Dmitry A. Karpeev},
	title	=	{Mesh Algorithms for {PDE} with {Sieve} {I}: {Mesh} Distribution},
	journal	=	{Scientific Programming},
	volume	=	{17},
	number	=	{3},
	pages	=	{215--230},
	year	=	{2009},
	doi	=	{10.3233/SPR-2009-0249}

}

@TechReport{KnepleyKarpeev07B,

	pages	=	"14",
	year	=	"2007",
	type	=	"Technical Report",
	number	=	"ANL/MCS-P????-????",
	institution	=	"Argonne National Laboratory",
	title	=	"Sieve Concepts and Interfaces",
	author	=	"Matthew G. Knepley and Dmitry A. Karpeev",
	abstract	=	"",
	url	=	"ftp://info.mcs.anl.gov/pub/tech_reports/reports/P????.pdf",
	month	=	"February"

}

@TechReport{KnepleyKarpeev07C,

	pages	=	"14",
	year	=	"2008",
	type	=	"Technical Report",
	number	=	"ANL/MCS to appear",
	institution	=	"Argonne National Laboratory",
	title	=	"Sieve Implementation",
	author	=	"Matthew G. Knepley and Dmitry A. Karpeev",
	abstract	=	"",
	url	=	"ftp://info.mcs.anl.gov/pub/tech_reports/reports/P????.pdf",
	month	=	"January"

}
%
%

Books

%
@BOOK{pacheco,

	AUTHOR	=	"Peter Pacheco",
	TITLE	=	"Parallel Programming with MPI",
	YEAR	=	"1997",
	PUBLISHER	=	"Morgan-Kaufmann",
	note	=	"Devotes a couple of sections to PETSc"

}
@BOOK{1sbg,

	AUTHOR	=	"Barry F. Smith and Petter Bj{\o}rstad and William D. Gropp",
	TITLE	=	"Domain Decomposition: Parallel Multilevel Methods for Elliptic Partial Differential Equations",
	YEAR	=	"1996",
	PUBLISHER	=	"Cambridge University Press",
	url	=	"http://www.mcs.anl.gov/\~{ }bsmith/ddbook.html"

}
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