Actual source code: petscsf.h

petsc-3.7.0 2016-04-25
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  1: /*
  2:    A star forest (SF) describes a communication pattern
  3: */
  6: #include <petscsys.h>
  7: #include <petscsftypes.h>

  9: PETSC_EXTERN PetscClassId PETSCSF_CLASSID;

 11: /*J
 12:     PetscSFType - String with the name of a PetscSF method or the creation function
 13:        with an optional dynamic library name, for example
 14:        http://www.mcs.anl.gov/petsc/lib.so:mysfcreate()

 16:    Level: beginner

 18:    Notes: The two approaches provided are
 19: $     PETSCSFBASIC which uses MPI 1 message passing to perform the communication and
 20: $     PETSCSFWINDOW which uses MPI 2 one-sided operations to perform the communication, this may be more efficient,
 21: $                   but may not be available for all MPI distributions. In particular OpenMPI has bugs in its one-sided
 22: $                   operations that prevent its use.

 24: .seealso: PetscSFSetType(), PetscSF
 25: J*/
 26: typedef const char *PetscSFType;
 27: #define PETSCSFBASIC  "basic"
 28: #define PETSCSFWINDOW "window"

 30: /*E
 31:     PetscSFWindowSyncType - Type of synchronization for PETSCSFWINDOW

 33: $  PETSCSF_WINDOW_SYNC_FENCE - simplest model, synchronizing across communicator
 34: $  PETSCSF_WINDOW_SYNC_LOCK - passive model, less synchronous, requires less setup than PETSCSF_WINDOW_SYNC_ACTIVE, but may require more handshakes
 35: $  PETSCSF_WINDOW_SYNC_ACTIVE - active model, provides most information to MPI implementation, needs to construct 2-way process groups (more setup than PETSCSF_WINDOW_SYNC_LOCK)

 37:    Level: advanced

 39: .seealso: PetscSFWindowSetSyncType(), PetscSFWindowGetSyncType()
 40: E*/
 41: typedef enum {PETSCSF_WINDOW_SYNC_FENCE,PETSCSF_WINDOW_SYNC_LOCK,PETSCSF_WINDOW_SYNC_ACTIVE} PetscSFWindowSyncType;
 42: PETSC_EXTERN const char *const PetscSFWindowSyncTypes[];

 44: /*E
 45:     PetscSFDuplicateOption - Aspects to preserve when duplicating a PetscSF

 47: $  PETSCSF_DUPLICATE_CONFONLY - configuration only, user must call PetscSFSetGraph()
 48: $  PETSCSF_DUPLICATE_RANKS - communication ranks preserved, but different graph (allows simpler setup after calling PetscSFSetGraph())
 49: $  PETSCSF_DUPLICATE_GRAPH - entire graph duplicated

 51:    Level: beginner

 53: .seealso: PetscSFDuplicate()
 54: E*/
 55: typedef enum {PETSCSF_DUPLICATE_CONFONLY,PETSCSF_DUPLICATE_RANKS,PETSCSF_DUPLICATE_GRAPH} PetscSFDuplicateOption;
 56: PETSC_EXTERN const char *const PetscSFDuplicateOptions[];

 58: PETSC_EXTERN PetscFunctionList PetscSFList;
 59: PETSC_EXTERN PetscErrorCode PetscSFRegister(const char[],PetscErrorCode (*)(PetscSF));

 61: PETSC_EXTERN PetscErrorCode PetscSFInitializePackage(void);
 62: PETSC_EXTERN PetscErrorCode PetscSFFinalizePackage(void);
 63: PETSC_EXTERN PetscErrorCode PetscSFCreate(MPI_Comm comm,PetscSF*);
 64: PETSC_EXTERN PetscErrorCode PetscSFDestroy(PetscSF*);
 65: PETSC_EXTERN PetscErrorCode PetscSFSetType(PetscSF,PetscSFType);
 66: PETSC_EXTERN PetscErrorCode PetscSFView(PetscSF,PetscViewer);
 67: PETSC_STATIC_INLINE PetscErrorCode PetscSFViewFromOptions(PetscSF A,PetscObject obj,const char name[]) {return PetscObjectViewFromOptions((PetscObject)A,obj,name);}
 68: PETSC_EXTERN PetscErrorCode PetscSFSetUp(PetscSF);
 69: PETSC_EXTERN PetscErrorCode PetscSFSetFromOptions(PetscSF);
 70: PETSC_EXTERN PetscErrorCode PetscSFDuplicate(PetscSF,PetscSFDuplicateOption,PetscSF*);
 71: PETSC_EXTERN PetscErrorCode PetscSFWindowSetSyncType(PetscSF,PetscSFWindowSyncType);
 72: PETSC_EXTERN PetscErrorCode PetscSFWindowGetSyncType(PetscSF,PetscSFWindowSyncType*);
 73: PETSC_EXTERN PetscErrorCode PetscSFSetRankOrder(PetscSF,PetscBool);
 74: PETSC_EXTERN PetscErrorCode PetscSFSetGraph(PetscSF,PetscInt,PetscInt,const PetscInt*,PetscCopyMode,const PetscSFNode*,PetscCopyMode);
 75: PETSC_EXTERN PetscErrorCode PetscSFGetGraph(PetscSF,PetscInt *nroots,PetscInt *nleaves,const PetscInt **ilocal,const PetscSFNode **iremote);
 76: PETSC_EXTERN PetscErrorCode PetscSFGetLeafRange(PetscSF,PetscInt*,PetscInt*);
 77: PETSC_EXTERN PetscErrorCode PetscSFCreateEmbeddedSF(PetscSF,PetscInt nroots,const PetscInt *selected,PetscSF *newsf);
 78: PETSC_EXTERN PetscErrorCode PetscSFCreateEmbeddedLeafSF(PetscSF,PetscInt,const PetscInt *, PetscSF *);
 79: PETSC_EXTERN PetscErrorCode PetscSFReset(PetscSF);
 80: PETSC_EXTERN PetscErrorCode PetscSFGetRanks(PetscSF,PetscInt*,const PetscMPIInt**,const PetscInt**,const PetscInt**,const PetscInt**);
 81: PETSC_EXTERN PetscErrorCode PetscSFGetGroups(PetscSF,MPI_Group*,MPI_Group*);
 82: PETSC_EXTERN PetscErrorCode PetscSFGetMultiSF(PetscSF,PetscSF*);
 83: PETSC_EXTERN PetscErrorCode PetscSFCreateInverseSF(PetscSF,PetscSF*);

 85: /* broadcasts rootdata to leafdata */
 86: PETSC_EXTERN PetscErrorCode PetscSFBcastBegin(PetscSF,MPI_Datatype,const void *rootdata,void *leafdata)
 87:   PetscAttrMPIPointerWithType(3,2) PetscAttrMPIPointerWithType(4,2);
 88: PETSC_EXTERN PetscErrorCode PetscSFBcastEnd(PetscSF,MPI_Datatype,const void *rootdata,void *leafdata)
 89:   PetscAttrMPIPointerWithType(3,2) PetscAttrMPIPointerWithType(4,2);
 90: /* Reduce leafdata into rootdata using provided operation */
 91: PETSC_EXTERN PetscErrorCode PetscSFReduceBegin(PetscSF,MPI_Datatype,const void *leafdata,void *rootdata,MPI_Op)
 92:   PetscAttrMPIPointerWithType(3,2) PetscAttrMPIPointerWithType(4,2);
 93: PETSC_EXTERN PetscErrorCode PetscSFReduceEnd(PetscSF,MPI_Datatype,const void *leafdata,void *rootdata,MPI_Op)
 94:   PetscAttrMPIPointerWithType(3,2) PetscAttrMPIPointerWithType(4,2);
 95: /* Atomically modifies (using provided operation) rootdata using leafdata from each leaf, value at root at time of modification is returned in leafupdate. */
 96: PETSC_EXTERN PetscErrorCode PetscSFFetchAndOpBegin(PetscSF,MPI_Datatype,void *rootdata,const void *leafdata,void *leafupdate,MPI_Op)
 97:   PetscAttrMPIPointerWithType(3,2) PetscAttrMPIPointerWithType(4,2) PetscAttrMPIPointerWithType(5,2);
 98: PETSC_EXTERN PetscErrorCode PetscSFFetchAndOpEnd(PetscSF,MPI_Datatype,void *rootdata,const void *leafdata,void *leafupdate,MPI_Op)
 99:   PetscAttrMPIPointerWithType(3,2) PetscAttrMPIPointerWithType(4,2) PetscAttrMPIPointerWithType(5,2);
100: /* Compute the degree of every root vertex (number of leaves in its star) */
101: PETSC_EXTERN PetscErrorCode PetscSFComputeDegreeBegin(PetscSF,const PetscInt **degree);
102: PETSC_EXTERN PetscErrorCode PetscSFComputeDegreeEnd(PetscSF,const PetscInt **degree);
103: /* Concatenate data from all leaves into roots */
104: PETSC_EXTERN PetscErrorCode PetscSFGatherBegin(PetscSF,MPI_Datatype,const void *leafdata,void *multirootdata)
105:   PetscAttrMPIPointerWithType(3,2) PetscAttrMPIPointerWithType(4,2);
106: PETSC_EXTERN PetscErrorCode PetscSFGatherEnd(PetscSF,MPI_Datatype,const void *leafdata,void *multirootdata)
107:   PetscAttrMPIPointerWithType(3,2) PetscAttrMPIPointerWithType(4,2);
108: /* Distribute distinct values to each leaf from roots */
109: PETSC_EXTERN PetscErrorCode PetscSFScatterBegin(PetscSF,MPI_Datatype,const void *multirootdata,void *leafdata)
110:   PetscAttrMPIPointerWithType(3,2) PetscAttrMPIPointerWithType(4,2);
111: PETSC_EXTERN PetscErrorCode PetscSFScatterEnd(PetscSF,MPI_Datatype,const void *multirootdata,void *leafdata)
112:   PetscAttrMPIPointerWithType(3,2) PetscAttrMPIPointerWithType(4,2);

114: PETSC_EXTERN PetscErrorCode PetscSFCompose(PetscSF,PetscSF,PetscSF*);

116: #if defined(MPI_REPLACE)
117: #  define MPIU_REPLACE MPI_REPLACE
118: #else
119: /* When using an old MPI such that MPI_REPLACE is not defined, we do not pass MPI_REPLACE to MPI at all.  Instead, we
120:  * use it as a flag for our own reducer in the PETSCSFBASIC implementation.  This could be any unique value unlikely to
121:  * collide with another MPI_Op so we'll just use the value that has been used by every version of MPICH since
122:  * MPICH2-1.0.6. */
123: #  define MPIU_REPLACE (MPI_Op)(0x5800000d)
124: #endif

126: #endif