Actual source code: petscsf.h

petsc-3.5.2 2014-09-08
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  1: /*
  2:    A star forest (SF) describes a communication pattern
  3: */
  6: #include <petscsys.h>
  7: #include <petscsftypes.h>

  9: PETSC_EXTERN PetscClassId PETSCSF_CLASSID;

 11: /*J
 12:     PetscSFType - String with the name of a PetscSF method or the creation function
 13:        with an optional dynamic library name, for example
 14:        http://www.mcs.anl.gov/petsc/lib.so:mysfcreate()

 16:    Level: beginner

 18:    Notes: The two approaches provided are
 19: $     PETSCSFBASIC which uses MPI 1 message passing to perform the communication and
 20: $     PETSCSFWINDOW which uses MPI 2 one-sided operations to perform the communication, this may be more efficient,
 21: $                   but may not be available for all MPI distributions. In particular OpenMPI has bugs in its one-sided
 22: $                   operations that prevent its use.

 24: .seealso: PetscSFSetType(), PetscSF
 25: J*/
 26: typedef const char *PetscSFType;
 27: #define PETSCSFBASIC  "basic"
 28: #define PETSCSFWINDOW "window"

 30: /*S
 31:    PetscSFNode - specifier of owner and index

 33:    Level: beginner

 35:   Concepts: indexing, stride, distribution

 37: .seealso: PetscSFSetGraph()
 38: S*/
 39: typedef struct {
 40:   PetscInt rank;                /* Rank of owner */
 41:   PetscInt index;               /* Index of node on rank */
 42: } PetscSFNode;

 44: /*E
 45:     PetscSFWindowSyncType - Type of synchronization for PETSCSFWINDOW

 47: $  PETSCSF_WINDOW_SYNC_FENCE - simplest model, synchronizing across communicator
 48: $  PETSCSF_WINDOW_SYNC_LOCK - passive model, less synchronous, requires less setup than PETSCSF_WINDOW_SYNC_ACTIVE, but may require more handshakes
 49: $  PETSCSF_WINDOW_SYNC_ACTIVE - active model, provides most information to MPI implementation, needs to construct 2-way process groups (more setup than PETSCSF_WINDOW_SYNC_LOCK)

 51:    Level: advanced

 53: .seealso: PetscSFWindowSetSyncType(), PetscSFWindowGetSyncType()
 54: E*/
 55: typedef enum {PETSCSF_WINDOW_SYNC_FENCE,PETSCSF_WINDOW_SYNC_LOCK,PETSCSF_WINDOW_SYNC_ACTIVE} PetscSFWindowSyncType;
 56: PETSC_EXTERN const char *const PetscSFWindowSyncTypes[];

 58: /*E
 59:     PetscSFDuplicateOption - Aspects to preserve when duplicating a PetscSF

 61: $  PETSCSF_DUPLICATE_CONFONLY - configuration only, user must call PetscSFSetGraph()
 62: $  PETSCSF_DUPLICATE_RANKS - communication ranks preserved, but different graph (allows simpler setup after calling PetscSFSetGraph())
 63: $  PETSCSF_DUPLICATE_GRAPH - entire graph duplicated

 65:    Level: beginner

 67: .seealso: PetscSFDuplicate()
 68: E*/
 69: typedef enum {PETSCSF_DUPLICATE_CONFONLY,PETSCSF_DUPLICATE_RANKS,PETSCSF_DUPLICATE_GRAPH} PetscSFDuplicateOption;
 70: PETSC_EXTERN const char *const PetscSFDuplicateOptions[];

 72: PETSC_EXTERN PetscFunctionList PetscSFList;
 73: PETSC_EXTERN PetscErrorCode PetscSFRegisterAll(void);
 74: PETSC_EXTERN PetscErrorCode PetscSFRegister(const char[],PetscErrorCode (*)(PetscSF));

 76: PETSC_EXTERN PetscErrorCode PetscSFInitializePackage(void);
 77: PETSC_EXTERN PetscErrorCode PetscSFFinalizePackage(void);
 78: PETSC_EXTERN PetscErrorCode PetscSFCreate(MPI_Comm comm,PetscSF*);
 79: PETSC_EXTERN PetscErrorCode PetscSFDestroy(PetscSF*);
 80: PETSC_EXTERN PetscErrorCode PetscSFSetType(PetscSF,PetscSFType);
 81: PETSC_EXTERN PetscErrorCode PetscSFView(PetscSF,PetscViewer);
 82: PETSC_EXTERN PetscErrorCode PetscSFSetUp(PetscSF);
 83: PETSC_EXTERN PetscErrorCode PetscSFSetFromOptions(PetscSF);
 84: PETSC_EXTERN PetscErrorCode PetscSFDuplicate(PetscSF,PetscSFDuplicateOption,PetscSF*);
 85: PETSC_EXTERN PetscErrorCode PetscSFWindowSetSyncType(PetscSF,PetscSFWindowSyncType);
 86: PETSC_EXTERN PetscErrorCode PetscSFWindowGetSyncType(PetscSF,PetscSFWindowSyncType*);
 87: PETSC_EXTERN PetscErrorCode PetscSFSetRankOrder(PetscSF,PetscBool);
 88: PETSC_EXTERN PetscErrorCode PetscSFSetGraph(PetscSF,PetscInt,PetscInt,const PetscInt*,PetscCopyMode,const PetscSFNode*,PetscCopyMode);
 89: PETSC_EXTERN PetscErrorCode PetscSFGetGraph(PetscSF,PetscInt *nroots,PetscInt *nleaves,const PetscInt **ilocal,const PetscSFNode **iremote);
 90: PETSC_EXTERN PetscErrorCode PetscSFGetLeafRange(PetscSF,PetscInt*,PetscInt*);
 91: PETSC_EXTERN PetscErrorCode PetscSFCreateEmbeddedSF(PetscSF,PetscInt nroots,const PetscInt *selected,PetscSF *newsf);
 92: PETSC_EXTERN PetscErrorCode PetscSFReset(PetscSF);
 93: PETSC_EXTERN PetscErrorCode PetscSFGetRanks(PetscSF,PetscInt*,const PetscMPIInt**,const PetscInt**,const PetscInt**,const PetscInt**);
 94: PETSC_EXTERN PetscErrorCode PetscSFGetGroups(PetscSF,MPI_Group*,MPI_Group*);
 95: PETSC_EXTERN PetscErrorCode PetscSFGetMultiSF(PetscSF,PetscSF*);
 96: PETSC_EXTERN PetscErrorCode PetscSFCreateInverseSF(PetscSF,PetscSF*);

 98: /* broadcasts rootdata to leafdata */
 99: PETSC_EXTERN PetscErrorCode PetscSFBcastBegin(PetscSF,MPI_Datatype,const void *rootdata,void *leafdata)
100:   PetscAttrMPIPointerWithType(3,2) PetscAttrMPIPointerWithType(4,2);
101: PETSC_EXTERN PetscErrorCode PetscSFBcastEnd(PetscSF,MPI_Datatype,const void *rootdata,void *leafdata)
102:   PetscAttrMPIPointerWithType(3,2) PetscAttrMPIPointerWithType(4,2);
103: /* Reduce leafdata into rootdata using provided operation */
104: PETSC_EXTERN PetscErrorCode PetscSFReduceBegin(PetscSF,MPI_Datatype,const void *leafdata,void *rootdata,MPI_Op)
105:   PetscAttrMPIPointerWithType(3,2) PetscAttrMPIPointerWithType(4,2);
106: PETSC_EXTERN PetscErrorCode PetscSFReduceEnd(PetscSF,MPI_Datatype,const void *leafdata,void *rootdata,MPI_Op)
107:   PetscAttrMPIPointerWithType(3,2) PetscAttrMPIPointerWithType(4,2);
108: /* Atomically modifies (using provided operation) rootdata using leafdata from each leaf, value at root at time of modification is returned in leafupdate. */
109: PETSC_EXTERN PetscErrorCode PetscSFFetchAndOpBegin(PetscSF,MPI_Datatype,void *rootdata,const void *leafdata,void *leafupdate,MPI_Op)
110:   PetscAttrMPIPointerWithType(3,2) PetscAttrMPIPointerWithType(4,2) PetscAttrMPIPointerWithType(5,2);
111: PETSC_EXTERN PetscErrorCode PetscSFFetchAndOpEnd(PetscSF,MPI_Datatype,void *rootdata,const void *leafdata,void *leafupdate,MPI_Op)
112:   PetscAttrMPIPointerWithType(3,2) PetscAttrMPIPointerWithType(4,2) PetscAttrMPIPointerWithType(5,2);
113: /* Compute the degree of every root vertex (number of leaves in its star) */
114: PETSC_EXTERN PetscErrorCode PetscSFComputeDegreeBegin(PetscSF,const PetscInt **degree);
115: PETSC_EXTERN PetscErrorCode PetscSFComputeDegreeEnd(PetscSF,const PetscInt **degree);
116: /* Concatenate data from all leaves into roots */
117: PETSC_EXTERN PetscErrorCode PetscSFGatherBegin(PetscSF,MPI_Datatype,const void *leafdata,void *multirootdata)
118:   PetscAttrMPIPointerWithType(3,2) PetscAttrMPIPointerWithType(4,2);
119: PETSC_EXTERN PetscErrorCode PetscSFGatherEnd(PetscSF,MPI_Datatype,const void *leafdata,void *multirootdata)
120:   PetscAttrMPIPointerWithType(3,2) PetscAttrMPIPointerWithType(4,2);
121: /* Distribute distinct values to each leaf from roots */
122: PETSC_EXTERN PetscErrorCode PetscSFScatterBegin(PetscSF,MPI_Datatype,const void *multirootdata,void *leafdata)
123:   PetscAttrMPIPointerWithType(3,2) PetscAttrMPIPointerWithType(4,2);
124: PETSC_EXTERN PetscErrorCode PetscSFScatterEnd(PetscSF,MPI_Datatype,const void *multirootdata,void *leafdata)
125:   PetscAttrMPIPointerWithType(3,2) PetscAttrMPIPointerWithType(4,2);

127: #if defined(MPI_REPLACE)
128: #  define MPIU_REPLACE MPI_REPLACE
129: #else
130: /* When using an old MPI such that MPI_REPLACE is not defined, we do not pass MPI_REPLACE to MPI at all.  Instead, we
131:  * use it as a flag for our own reducer in the PETSCSFBASIC implementation.  This could be any unique value unlikely to
132:  * collide with another MPI_Op so we'll just use the value that has been used by every version of MPICH since
133:  * MPICH2-1.0.6. */
134: #  define MPIU_REPLACE (MPI_Op)(0x5800000d)
135: #endif

137: #endif