Actual source code: compressedrow.c

petsc-3.5.1 2014-08-01
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  2: #include <petsc-private/matimpl.h>  /*I   "petscmat.h"  I*/

  6: /*@C
  7:    MatCheckCompressedRow - Determines whether the compressed row matrix format should be used.
  8:       If the format is to be used, this routine creates Mat_CompressedRow struct.
  9:       Compressed row format provides high performance routines by taking advantage of zero rows.
 10:       Supported types are MATAIJ, MATBAIJ and MATSBAIJ.

 12:    Collective

 14:    Input Parameters:
 15: +  A             - the matrix
 16: .  nrows         - number of rows with nonzero entries
 17: .  compressedrow - pointer to the struct Mat_CompressedRow
 18: .  ai            - row pointer used by seqaij and seqbaij
 19: .  mbs           - number of (block) rows represented by ai
 20: -  ratio         - ratio of (num of zero rows)/m, used to determine if the compressed row format should be used

 22:    Notes: By default PETSc will not check for compressed rows on sequential matrices. Call MatSetOption(Mat,MAT_CHECK_COMPRESSED_ROW,PETSC_TRUE); before
 23:           MatAssemblyBegin() to have it check.

 25:    Developer Note: The reason this takes the compressedrow, ai and mbs arguments is because it is called by both the SeqAIJ and SEQBAIJ matrices and
 26:                    the values are not therefore obtained by directly taking the values from the matrix object.
 27:                    This is not a general public routine and hence is not listed in petscmat.h (it exposes a private data structure) but it is used
 28:                    by some preconditioners and hence is labeled as PETSC_EXTERN 

 30:    Level: developer
 31: @*/
 32: PETSC_EXTERN PetscErrorCode MatCheckCompressedRow(Mat A,PetscInt nrows,Mat_CompressedRow *compressedrow,PetscInt *ai,PetscInt mbs,PetscReal ratio)
 33: {
 35:   PetscInt       *cpi=NULL,*ridx=NULL,nz,i,row;

 38:   /* in case this is being reused, delete old space */
 39:   PetscFree2(compressedrow->i,compressedrow->rindex);

 41:   compressedrow->i      = NULL;
 42:   compressedrow->rindex = NULL;


 45:   /* compute number of zero rows */
 46:   nrows = mbs - nrows;

 48:   /* if a large number of zero rows is found, use compressedrow data structure */
 49:   if (nrows < ratio*mbs) {
 50:     compressedrow->use = PETSC_FALSE;

 52:     PetscInfo3(A,"Found the ratio (num_zerorows %d)/(num_localrows %d) < %g. Do not use CompressedRow routines.\n",nrows,mbs,(double)ratio);
 53:   } else {
 54:     compressedrow->use = PETSC_TRUE;

 56:     PetscInfo3(A,"Found the ratio (num_zerorows %d)/(num_localrows %d) > %g. Use CompressedRow routines.\n",nrows,mbs,(double)ratio);

 58:     /* set compressed row format */
 59:     nrows  = mbs - nrows; /* num of non-zero rows */
 60:     PetscMalloc2(nrows+1,&cpi,nrows,&ridx);
 61:     row    = 0;
 62:     cpi[0] = 0;
 63:     for (i=0; i<mbs; i++) {
 64:       nz = ai[i+1] - ai[i];
 65:       if (nz == 0) continue;
 66:       cpi[row+1]  = ai[i+1];    /* compressed row pointer */
 67:       ridx[row++] = i;          /* compressed row local index */
 68:     }
 69:     compressedrow->nrows  = nrows;
 70:     compressedrow->i      = cpi;
 71:     compressedrow->rindex = ridx;
 72:   }
 73:   return(0);
 74: }