%
%   Papers that we reference, BUT NOT any paper that uses PETSc or is about PETSc
% those belong in petscapp.bib
%
%   DO NOT DEFINE ANY ABREVIATIONS TO USE IN ENTRIES BELOW: Always write out the names of journels etc


@article{smith1997domain,
  title={Domain Decomposition Methods for Partial Differential Equations},
  author={Smith, B.F.},
  journal={ICASE LARC Interdisciplinary Series in Science and Engineering},
  volume={4},
  pages={225--244},
  year={1997},
  publisher={Citeseer}
}
@book{KS2000,
	Author = {D. Kinderlehrer and G. Stampacchia},
	Publisher = {Society for Industrial Mathematics},
	Title = {An Introduction to Variational Inequalities and Their Applications},
	Year = {2000}
}
@article{wan2000energy,
  title={An energy-minimizing interpolation for robust multigrid methods},
  author={Wan, W.L. and Chan, T.F. and Smith, B.},
  journal={SIAM Journal on Scientific Computing},
  volume={21},
  number={4},
  pages={1632--1649},
  year={2000},
  publisher={Philadelphia, PA: SIAM, c1993-}
}

@article{chansmith1994,
  title={Domain decomposition and multigrid algorithms for elliptic problems on unstructured meshes},
  author={Chan, T.F. and Smith, B.F.},
  journal={Electronic Transactions on Numerical Analysis},
  volume={2},
  pages={171--182},
  year={1994}
}
@TechReport( proto-fsp,
    Author = "Venkatramani Balaji and Barry Smith and Brian Van Straalen and Priya Vashishta and  Michael Zarnstorff and Michael Zika",
    Title  = "Report of the {Proto-FSP} {Assessment Panel for the FSP}",
    Institution = "Princeton Plasma Physics Laboratory",
    Year   = 2010,
    url = {http://www.pppl.gov/fsp/documents/Proto-FSPAssessmentReport.pdf}
    )

@article{ipsen2001,
	Author = {Ilse C. F. Ipsen},
	Journal = {SIAM J. Sci. Comput.},
	Pages = {1050--1051},
        Volume = 23,
	Publisher = {SIAM},
	Title = {A Note on Preconditioning Nonsymmetric Matrices},
	Year = {2001}}
% Random papers on solvers for GPUs
@inproceedings{gpus-suck,
 author = {Vuduc, R. and Chandramowlishwaran, A. and Choi, J. and Guney M. },
 title = { On the Limits of {GPU} Acceleration},
 booktitle = {HOTPAR: Proceedings of the 2nd USENIX Workshop on Hot Topics in Parallelism},
 year = {2010},
 publisher = {USENIX}
 }
@inproceedings{882364,
 author = {Bolz, Jeff and Farmer, Ian and Grinspun, Eitan and Schr\"{o}oder, Peter},
 title = {Sparse matrix solvers on the {GPU}: conjugate gradients and multigrid},
 booktitle = {SIGGRAPH '03: ACM SIGGRAPH 2003 Papers},
 year = {2003},
 isbn = {1-58113-709-5},
 pages = {917--924},
 location = {San Diego, California},
 doi = {http://doi.acm.org/10.1145/1201775.882364},
 publisher = {ACM},
 address = {New York, NY, USA},
 }
@conference{feng2008multigrid,
	Author = {Feng, Z. and Li, P.},
	Booktitle = {IEEE/ACM International Conference on Computer-Aided Design, 2008. ICCAD 2008},
	Date-Added = {2010-08-19 15:57:06 -0500},
	Date-Modified = {2010-08-19 15:57:06 -0500},
	Pages = {647--654},
	Title = {Multigrid on {GPU}: Tackling power grid analysis on parallel SIMT platforms},
	Year = {2008}}

@conference{goodnight2003multigrid,
	Author = {Goodnight, N. and Woolley, C. and Lewin, G. and Luebke, D. and Humphreys, G.},
	Booktitle = {Proceedings of the ACM SIGGRAPH/EUROGRAPHICS conference on Graphics hardware},
	Date-Added = {2010-08-19 15:45:20 -0500},
	Date-Modified = {2010-08-19 15:45:20 -0500},
	Organization = {Eurographics Association},
	Pages = {102--111},
	Title = {A multigrid solver for boundary value problems using programmable graphics hardware},
	Year = {2003}}

@article{buatois2007concurrent,
	Author = {Buatois, L. and Caumon, G. and L{\'e}vy, B.},
	Date-Added = {2010-08-19 15:45:02 -0500},
	Date-Modified = {2010-08-19 15:45:02 -0500},
	Journal = {High Performance Computing and Communications},
	Pages = {358--371},
	Publisher = {Citeseer},
	Title = {Concurrent number cruncher: {A}n efficient sparse linear solver on the {GPU}},
	Year = {2007}}

@article{joldes2010real,
	Author = {Joldes, G.R. and Wittek, A. and Miller, K.},
	Date-Added = {2010-08-19 15:44:41 -0500},
	Date-Modified = {2010-08-19 15:44:41 -0500},
	Journal = {Computer Methods in Applied Mechanics and Engineering},
	Publisher = {Elsevier},
	Title = {Real-time nonlinear finite element computations on {GPU}-application to neurosurgical simulation},
	Year = {2010}}

@misc{aharon2005gpu,
	Author = {Aharon, S.},
	Date-Added = {2010-08-19 15:44:32 -0500},
	Date-Modified = {2010-08-19 15:44:32 -0500},
	Month = apr # {~27},
	Note = {US Patent App. 11/115,642},
	Publisher = {Google Patents},
	Title = {{GPU}-based Finite Element},
	Year = {2005}}

@article{cevahir2009fast,
	Author = {Cevahir, A. and Nukada, A. and Matsuoka, S.},
	Date-Added = {2010-08-19 15:44:01 -0500},
	Date-Modified = {2010-08-19 15:44:01 -0500},
	Journal = {Computational Science--ICCS 2009},
	Pages = {893--903},
	Publisher = {Springer},
	Title = {Fast conjugate gradients with multiple {GPU}s},
	Year = {2009}}

@article{maier1995symmetric,
	Author = {Maier, G. and Miccoli, S. and Perego, U. and Novati, G.},
	Date-Added = {2010-08-19 15:43:57 -0500},
	Date-Modified = {2010-08-19 15:43:57 -0500},
	Journal = {Computational Mechanics},
	Number = {1},
	Pages = {115--129},
	Publisher = {Springer},
	Title = {Symmetric {G}alerkin boundary element method in plasticity and gradient plasticity},
	Volume = {17},
	Year = {1995}}

@article{corrigan-running,
	Author = {Corrigan, A. and Camelli, F. and L{\\"o}hner, R. and Wallin, J.},
	Date-Added = {2010-08-19 15:43:47 -0500},
	Date-Modified = {2010-08-19 15:43:47 -0500},
	Journal = {International Journal for Numerical Methods in Fluids},
	Publisher = {John Wiley \& Sons},
	Title = {Running unstructured grid based CFD solvers on modern graphics hardware}}

@inproceedings{Volkov08,
  author    = {Vasily Volkov and James W. Demmel},
  title     = {Benchmarking GPUs to tune dense linear algebra},
  booktitle = {Proceedings of the 2008 ACM/IEEE Conference on Supercomputing (SC08)},
  note      = {\url{http://mc.stanford.edu/cgi-bin/images/6/65/SC08_Volkov_GPU.pdf}},
  year      = {2008}
}

@techreport{cray-mvmult,
	author = "Guy~E. Blelloch and Michael~A. Heroux and Marco Zagha",
	title = "Segmented Operations for Sparse Matrix Computation
		 on Vector Multiprocessors",
	institution = "School of Computer Science, Carnegie Mellon University",
	number = "CMU-CS-93-173",
	month = aug,
	year = 1993}

@conference{bell2009implementing,
	Author = {Bell, N. and Garland, M.},
	Booktitle = {Proceedings of the Conference on High Performance Computing Networking, Storage and Analysis},
	Date-Added = {2010-08-19 15:43:42 -0500},
	Date-Modified = {2010-08-19 15:43:42 -0500},
	Organization = {ACM},
	Pages = {1--11},
	Title = {Implementing sparse matrix-vector multiplication on throughput-oriented processors},
	Year = {2009}}

@article{bell2008efficient,
	Author = {Bell, N. and Garland, M.},
	Date-Added = {2010-08-19 15:43:36 -0500},
	Date-Modified = {2010-08-19 15:43:36 -0500},
	Journal = {{NVIDIA} Corporation, {NVIDIA} Technical Report NVR-2008-004},
	Title = {Efficient sparse matrix-vector multiplication on {CUDA}},
	Year = {2008}}

@article{cohen-fast,
	Author = {Cohen, J. and Molemaker, M.J.},
	Date-Added = {2010-08-19 15:43:34 -0500},
	Date-Modified = {2010-08-19 15:43:34 -0500},
	Journal = {Parallel Computational Fluid Dynamics: Recent Advances and Future Directions},
	Pages = {414},
	Publisher = {DEStech Publications},
	Title = {A fast double precision CFD code using CUDA}}

@article{kazhdan2008streaming,
	Author = {Kazhdan, M. and Hoppe, H.},
	Date-Added = {2010-08-19 15:43:32 -0500},
	Date-Modified = {2010-08-19 15:43:32 -0500},
	Journal = {ACM Transactions on Graphics (TOG)},
	Number = {3},
	Pages = {21},
	Publisher = {ACM},
	Title = {Streaming multigrid for gradient-domain operations on large images},
	Volume = {27},
	Year = {2008}}

@article{bonnet1998symmetric,
	Author = {Bonnet, M. and Maier, G. and Polizzotto, C.},
	Date-Added = {2010-08-19 15:43:18 -0500},
	Date-Modified = {2010-08-19 15:43:18 -0500},
	Journal = {Appl. Mech. Rev},
	Pages = {669--704},
	Title = {Symmetric {G}alerkin boundary element method.},
	Volume = {51},
	Year = {1998}}

@conference{zamith2007gpu,
	Author = {Zamith, M. and Clua, E. and Pagliosa, P. and Conci, A. and Montenegro, A. and Valente, L.},
	Booktitle = {Proceedings of the VI Brazilian Symposium on Computer Games and Digital Entertainment},
	Date-Added = {2010-08-19 15:43:14 -0500},
	Date-Modified = {2010-08-19 15:43:14 -0500},
	Pages = {37--43},
	Title = {The {GPU} used as a math co-processor in real time applications},
	Year = {2007}}

@article{baskaran2009optimizing,
	Author = {Baskaran, M.M. and Bordawekar, R.},
	Date-Added = {2010-08-19 15:42:56 -0500},
	Date-Modified = {2010-08-19 15:42:56 -0500},
	Journal = {IBM Research Report RC24704, IBM},
	Title = {Optimizing sparse matrix-vector multiplication on {GPU}s},
	Year = {2009}}

@misc{szeliski2006locally,
	Author = {Szeliski, R.},
	Date-Added = {2010-08-19 15:42:45 -0500},
	Date-Modified = {2010-08-19 15:42:45 -0500},
	Month = jul # {~25},
	Note = {US Patent App. 11/459,724},
	Publisher = {Google Patents},
	Title = {Locally adapted hierarchical basis preconditioning},
	Year = {2006}}

@article{jung2006cholesky,
	Author = {Jung, J.H. and O'Leary, D.P.},
	Date-Added = {2010-08-19 15:42:34 -0500},
	Date-Modified = {2010-08-19 15:42:34 -0500},
	Journal = {Scholarly Paper, University of Maryland},
	Publisher = {Citeseer},
	Title = {Cholesky decomposition and linear programming on a {GPU}},
	Year = {2006}}

@conference{filipovic2009gpu,
	Author = {Filipovic, J. and Peterlik, I. and Fousek, J.},
	Booktitle = {SAAHPC: Symposium on Application Accelerators in HPC},
	Date-Added = {2010-08-19 15:42:33 -0500},
	Date-Modified = {2010-08-19 15:42:33 -0500},
	Title = {{GPU} Acceleration of Equations Assembly in Finite Elements Method-Preliminary Results},
	Year = {2009}}

@article{taylor2009modelling,
	Author = {Taylor, ZA and Comas, O. and Cheng, M. and Passenger, J. and Hawkes, DJ and Atkinson, D. and Ourselin, S.},
	Date-Added = {2010-08-19 15:42:23 -0500},
	Date-Modified = {2010-08-19 15:42:23 -0500},
	Journal = {Medical Image Analysis},
	Number = {2},
	Pages = {234--244},
	Publisher = {Elsevier},
	Title = {On modelling of anisotropic viscoelasticity for soft tissue simulation: Numerical solution and {GPU} execution},
	Volume = {13},
	Year = {2009}}

@conference{owens2007survey,
	Author = {Owens, J.D. and Luebke, D. and Govindaraju, N. and Harris, M. and Kr{\\"u}ger, J. and Lefohn, A.E. and Purcell, T.J.},
	Booktitle = {Computer Graphics Forum},
	Date-Added = {2010-08-19 15:42:21 -0500},
	Date-Modified = {2010-08-19 15:42:21 -0500},
	Number = {1},
	Organization = {John Wiley \& Sons},
	Pages = {80--113},
	Title = {A survey of general-purpose computation on graphics hardware},
	Volume = {26},
	Year = {2007}}

@article{strzodka2005scientific,
	Author = {Strzodka, R. and Doggett, M. and Kolb, A.},
	Date-Added = {2010-08-19 15:42:18 -0500},
	Date-Modified = {2010-08-19 15:42:18 -0500},
	Journal = {Simulation Modelling Practice and Theory},
	Number = {8},
	Pages = {667--680},
	Publisher = {Elsevier},
	Title = {Scientific computation for simulations on programmable graphics hardware},
	Volume = {13},
	Year = {2005}}

@conference{rumpf2001using,
	Author = {Rumpf, M. and Strzodka, R.},
	Booktitle = {Proc. of IASTED Visualization, Imaging and Image Processing Conference (VIIP-01)},
	Date-Added = {2010-08-19 15:42:15 -0500},
	Date-Modified = {2010-08-19 15:42:15 -0500},
	Organization = {Citeseer},
	Pages = {193--202},
	Title = {Using graphics cards for quantized FEM computations},
	Year = {2001}}

@article{sirtori1992galerkin,
	Author = {Sirtori, S. and Maier, G. and Novati, G. and Miccoli, S.},
	Date-Added = {2010-08-19 15:42:14 -0500},
	Date-Modified = {2010-08-19 15:42:14 -0500},
	Journal = {International Journal for Numerical Methods in Engineering},
	Number = {2},
	Pages = {255--282},
	Publisher = {John Wiley \& Sons},
	Title = {A {G}alerkin symmetric boundary-element method in elasticity: formulation and implementation},
	Volume = {35},
	Year = {1992}}

@article{tejada2005large,
	Author = {Tejada, E. and Ertl, T.},
	Date-Added = {2010-08-19 15:42:09 -0500},
	Date-Modified = {2010-08-19 15:42:09 -0500},
	Journal = {Simulation Modelling Practice and Theory},
	Number = {8},
	Pages = {703--715},
	Publisher = {Elsevier},
	Title = {Large steps in {GPU}-based deformable bodies simulation},
	Volume = {13},
	Year = {2005}}

@article{goddeke2008using,
	Author = {Goddeke, D. and Strzodka, R. and Mohd-Yusof, J. and McCormick, P. and Wobker, H. and Becker, C. and Turek, S.},
	Date-Added = {2010-08-19 15:42:06 -0500},
	Date-Modified = {2010-08-19 15:42:06 -0500},
	Journal = {International Journal of Computational Science and Engineering},
	Number = {1},
	Pages = {36--55},
	Publisher = {Inderscience},
	Title = {Using {GPU}s to improve multigrid solver performance on a cluster},
	Volume = {4},
	Year = {2008}}

@article{garland2008parallel,
	Author = {Garland, M. and Le Grand, S. and Nickolls, J. and Anderson, J. and Hardwick, J. and Morton, S. and Phillips, E. and Zhang, Y. and Volkov, V.},
	Date-Added = {2010-08-19 15:41:51 -0500},
	Date-Modified = {2010-08-19 15:41:51 -0500},
	Journal = {IEEE Micro},
	Number = {4},
	Pages = {13--27},
	Title = {Parallel computing experiences with CUDA},
	Volume = {28},
	Year = {2008}}

@article{wong1985method,
	Author = {Wong, SH and Ciric, IR},
	Date-Added = {2010-08-19 15:41:48 -0500},
	Date-Modified = {2010-08-19 15:41:48 -0500},
	Journal = {COMPEL: The International Journal for Computation and Mathematics in Electrical and Electronic Engineering},
	Publisher = {MCB UP Ltd},
	Title = {Method of conformal transformation for the finite-element solution of axisymmetric exterior-field problems},
	Volume = {4},
	Year = {1985}}

@article{turek-feast,
	Author = {Turek, S. and G{\\"o}ddeke, D. and Becker, C. and Buijssen, S.H.M. and Wobker, H.},
	Date-Added = {2010-08-19 15:41:47 -0500},
	Date-Modified = {2010-08-19 15:41:47 -0500},
	Journal = {Concurrency and Computation: Practice and Experience},
	Publisher = {John Wiley \& Sons},
	Title = {FEAST-realization of hardware-oriented numerics for HPC simulations with finite elements}}

@article{abedi2006space,
	Author = {Abedi, R. and Petracovici, B. and Haber, R.B.},
	Date-Added = {2010-08-19 15:41:46 -0500},
	Date-Modified = {2010-08-19 15:41:46 -0500},
	Journal = {Computer Methods in Applied Mechanics and Engineering},
	Number = {25-28},
	Pages = {3247--3273},
	Publisher = {Elsevier},
	Title = {A space-time discontinuous {G}alerkin method for linearized elastodynamics with element-wise momentum balance},
	Volume = {195},
	Year = {2006}}

@conference{georgii2005interactive,
	Author = {Georgii, J. and Westermann, R.},
	Booktitle = {Proceedings of VMV},
	Date-Added = {2010-08-19 15:41:36 -0500},
	Date-Modified = {2010-08-19 15:41:36 -0500},
	Title = {Interactive simulation and rendering of heterogeneous deformable bodies},
	Year = {2005}}

@article{mosegaard2005gpu,
	Author = {Mosegaard, J. and others},
	Date-Added = {2010-08-19 15:41:35 -0500},
	Date-Modified = {2010-08-19 15:41:35 -0500},
	Publisher = {IEEE Computer Society},
	Title = {{GPU} accelerated surgical simulators for complex morphology},
	Year = {2005}}

@article{meyer2007particle,
	Author = {Meyer, M. and Nelson, B. and Kirby, R. and Whitaker, R.},
	Date-Added = {2010-08-19 15:41:33 -0500},
	Date-Modified = {2010-08-19 15:41:33 -0500},
	Journal = {IEEE Transactions on Visualization and Computer Graphics},
	Pages = {1015--1026},
	Publisher = {Published by the IEEE Computer Society},
	Title = {Particle systems for efficient and accurate high-order finite element visualization},
	Year = {2007}}

@conference{rumpf2001nonlinear,
	Author = {Rumpf, M. and Strzodka, R.},
	Booktitle = {Data Visualization 2001: proceedings of the Joint Eurographics-IEEE TCVG Symposium on Visualization in Ascona, Switzerland, May 28-30, 2001},
	Date-Added = {2010-08-19 15:41:29 -0500},
	Date-Modified = {2010-08-19 15:41:29 -0500},
	Organization = {Springer Verlag Wien},
	Pages = {75},
	Title = {Nonlinear diffusion in graphics hardware},
	Year = {2001}}

@article{georgii2005interactive,
	Author = {Georgii, J. and Echtler, F. and Westermann, R.},
	Date-Added = {2010-08-19 15:41:28 -0500},
	Date-Modified = {2010-08-19 15:41:28 -0500},
	Journal = {Simulation and Visualisation},
	Pages = {247--258},
	Publisher = {Citeseer},
	Title = {Interactive simulation of deformable bodies on {GPU}s},
	Volume = {2005},
	Year = {2005}}

@article{harish2007accelerating,
	Author = {Harish, P. and Narayanan, P.},
	Date-Added = {2010-08-19 15:41:27 -0500},
	Date-Modified = {2010-08-19 15:41:27 -0500},
	Journal = {High Performance Computing--HiPC 2007},
	Pages = {197--208},
	Publisher = {Springer},
	Title = {Accelerating large graph algorithms on the {GPU} using CUDA},
	Year = {2007}}

@article{keunings1995parallel,
	Author = {Keunings, R.},
	Date-Added = {2010-08-19 15:41:19 -0500},
	Date-Modified = {2010-08-19 15:41:19 -0500},
	Journal = {Computers and Chemical Engineering},
	Number = {6},
	Pages = {647--670},
	Publisher = {Oxford; New York: Pergamon Press, 1977-},
	Title = {Parallel finite element algorithms applied to computational rheology},
	Volume = {19},
	Year = {1995}}

@conference{taylor2007real,
	Author = {Taylor, Z.A. and Cheng, M. and Ourselin, S.},
	Booktitle = {Proceedings of the 10th international conference on Medical image computing and computer-assisted intervention-Volume Part I},
	Date-Added = {2010-08-19 15:41:17 -0500},
	Date-Modified = {2010-08-19 15:41:17 -0500},
	Organization = {Springer-Verlag},
	Pages = {701--708},
	Title = {Real-time nonlinear finite element analysis for surgical simulation using graphics processing units},
	Year = {2007}}

@article{liu2000finite,
	Author = {Liu, R. and Li, DY},
	Date-Added = {2010-08-19 15:41:16 -0500},
	Date-Modified = {2010-08-19 15:41:16 -0500},
	Journal = {Materials Science and Engineering A},
	Number = {1-2},
	Pages = {169--175},
	Publisher = {Elsevier},
	Title = {A finite element model study on wear resistance of pseudoelastic {TiNi} alloy},
	Volume = {277},
	Year = {2000}}

@conference{kakadiaris1994active,
	Author = {Kakadiaris, I.A. and Metaxas, D. and Bajcsy, R.},
	Booktitle = {IEEE Computer Society Conference on Computer Vision and Pattern Recognition},
	Date-Added = {2010-08-19 15:41:15 -0500},
	Date-Modified = {2010-08-19 15:41:15 -0500},
	Organization = {Citeseer},
	Pages = {980--980},
	Title = {Active part-decomposition, shape, and motion estimation of articulated objects: A physics-based approach},
	Year = {1994}}

@conference{de2004gpu,
	Author = {De Pascale, M. and De Pascale, G. and Prattichizzo, D. and Barbagli, F.},
	Booktitle = {Proceedings of Eurohaptics},
	Date-Added = {2010-08-19 15:41:14 -0500},
	Date-Modified = {2010-08-19 15:41:14 -0500},
	Organization = {Citeseer},
	Pages = {44--51},
	Title = {A {GPU}-friendly method for haptic and graphic rendering of deformable objects},
	Volume = {2004},
	Year = {2004}}

@book{taflove1995computational,
	Author = {Taflove, A. and Hagness, S.C.},
	Date-Added = {2010-08-19 15:41:14 -0500},
	Date-Modified = {2010-08-19 15:41:14 -0500},
	Publisher = {Artech House Norwood, MA},
	Title = {Computational electrodynamics},
	Year = {1995}}

@conference{galoppo2005lu,
	Author = {Galoppo, N. and Govindaraju, N.K. and Henson, M. and Manocha, D.},
	Booktitle = {Proceedings of the 2005 ACM/IEEE conference on Supercomputing},
	Date-Added = {2010-08-19 15:41:13 -0500},
	Date-Modified = {2010-08-19 15:41:13 -0500},
	Organization = {IEEE Computer Society},
	Pages = {3},
	Title = {{LU-GPU}: Efficient algorithms for solving dense linear systems on graphics hardware},
	Year = {2005}}

@conference{ryoo2008optimization,
	Author = {Ryoo, S. and Rodrigues, C.I. and Baghsorkhi, S.S. and Stone, S.S. and Kirk, D.B. and Hwu, W.W.},
	Booktitle = {Proceedings of the 13th ACM SIGPLAN Symposium on Principles and practice of parallel programming},
	Date-Added = {2010-08-19 15:41:12 -0500},
	Date-Modified = {2010-08-19 15:41:12 -0500},
	Organization = {ACM},
	Pages = {73--82},
	Title = {Optimization principles and application performance evaluation of a multithreaded {GPU} using CUDA},
	Year = {2008}}

@conference{micikevicius20093d,
	Author = {Micikevicius, P.},
	Booktitle = {Proceedings of 2nd Workshop on General Purpose Processing on Graphics Processing Units},
	Date-Added = {2010-08-19 15:41:11 -0500},
	Date-Modified = {2010-08-19 15:41:11 -0500},
	Organization = {ACM},
	Pages = {79--84},
	Title = {3D finite difference computation on {GPU}s using {CUDA}},
	Year = {2009}}

@conference{zhou2004pixel,
	Author = {Zhou, Y. and Garland, M. and Haber, R.},
	Booktitle = {IEEE Visualization, 2004},
	Date-Added = {2010-08-19 15:41:03 -0500},
	Date-Modified = {2010-08-19 15:41:03 -0500},
	Pages = {425--432},
	Title = {Pixel-exact rendering of spacetime finite element solutions},
	Year = {2004}}

@article{komatitsch2009porting,
	Author = {Komatitsch, D. and Mich{\'e}a, D. and Erlebacher, G.},
	Date-Added = {2010-08-19 15:41:01 -0500},
	Date-Modified = {2010-08-19 15:41:01 -0500},
	Journal = {Journal of Parallel and Distributed Computing},
	Number = {5},
	Pages = {451--460},
	Publisher = {Elsevier},
	Title = {Porting a high-order finite-element earthquake modeling application to NVIDIA graphics cards using CUDA},
	Volume = {69},
	Year = {2009}}

@article{komatitsch1998spectral,
	Author = {Komatitsch, D. and Vilotte, J.P.},
	Date-Added = {2010-08-19 15:40:59 -0500},
	Date-Modified = {2010-08-19 15:40:59 -0500},
	Journal = {Bulletin of the Seismological Society of America},
	Number = {2},
	Pages = {368--392},
	Publisher = {[El Cerrito, Calif., etc., Seismological Society of America, etc.]},
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@article{wu2005improved,
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	Date-Added = {2010-08-19 15:40:59 -0500},
	Date-Modified = {2010-08-19 15:40:59 -0500},
	Journal = {The Visual Computer},
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	Volume = {21},
	Year = {2005}}

@article{taylor2008high,
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	Volume = {27},
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@conference{bolz2003sparse,
	Author = {Bolz, J. and Farmer, I. and Grinspun, E. and Schr{\\"o}oder, P.},
	Booktitle = {ACM SIGGRAPH 2003 Papers},
	Date-Added = {2010-08-19 15:40:55 -0500},
	Date-Modified = {2010-08-19 15:40:55 -0500},
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	Title = {Sparse matrix solvers on the {GPU}: conjugate gradients and multigrid},
	Year = {2003}}

@article{wu2004hybrid,
	Author = {Wu, W. and Heng, P.A.},
	Date-Added = {2010-08-19 15:40:54 -0500},
	Date-Modified = {2010-08-19 15:40:54 -0500},
	Journal = {Computer Animation and Virtual Worlds},
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	Pages = {219--227},
	Publisher = {John Wiley \& Sons},
	Title = {A hybrid condensed finite element model with {GPU} acceleration for interactive 3D soft tissue cutting},
	Volume = {15},
	Year = {2004}}
% ----------------------------------------------------------------------------------------------------------------

@TechReport{davis97,
  author = "T. Davis",
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@TechReport{streams,
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@article{AReusken_1988b,
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  year =        "1988",
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@unpublished{mgnet,
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  year = 2009
}
@unpublished{copper,
  title = {Fourteenth Copper Mountain Conference on Multigrid Methods},
  author = {},
  note = {Held bi-annually},
  year = 2009
}
@BOOK{wessling1992,
      AUTHOR="Pieter Wesseling",
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}
@BOOK{bhm2000,
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}
@book{trottenberg2001multigrid,
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}
@TechReport{brandt1984,
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@Misc{gnep:report,
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@Misc{fusion:report,
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@Misc{hecrtf:report,
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@Misc{doesc20years,
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@incollection{fjp:ima,
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@inproceedings{poet,
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@Misc{ pseware-web-page,
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@Misc{ babel-web-page,
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@Misc{ infospheres-web-page,
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@misc{ hammond,
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@misc{ ornl,
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@Unpublished{ cumulvs-web-page,
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@Article{pcice,
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@Article{cumulvs97,
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@techreport{daly2012interagency,
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@techreport{ szyld,
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@BOOK{szyperski97,
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@Unpublished{petsc:external,
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@Unpublished{petsc:use-by-external-packages,
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@Unpublished{xray-web-page,
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@INPROCEEDINGS{ kohn98,
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@INPROCEEDINGS{ kohn01,
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@INPROCEEDINGS{ freitag_jones_plassmann98,
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@BOOK{templates,
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@InProceedings{parasha2,
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@Article{parti,
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@Article{mparti,
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@Article{gropp-lusk-doss-skjellum,
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@TechReport( cs97a,
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    TITLE   = "A restricted additive {S}chwarz preconditioner for general sparse linear systems ",
    YEAR    = 1997,
    Institution  = "Computer Science Department,
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    Number = "CU-CS 843-97",
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@article{cai2003restricted,
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@TECHREPORT{caisaad,
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        INSTITUTION="Army High Performance Computing
                     Research Center, University of Minnesota ",
        YEAR="1993",
        NUMBER="Preprint 93-027 ",
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@BOOK{ruminations,
      AUTHOR="Andrew Koenig and Barbara Moo",
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      YEAR="1996",
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@BOOK{mpi-complete,
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                  Walker and Jack Dongarra",
      TITLE="{MPI}: The Complete Reference",
      YEAR="1995",
      PUBLISHER="MIT Press"
      }
		

@Unpublished{ tcl-tk-web-page,
  title = 	 "{Tcl/Tk} {W}orld {W}ide {W}eb page",
  note = 	 "http://www.sunlabs.com/research/tcl/",
  year =	 1996,
  month =	 Aug
}

@Unpublished{ mpich-web-page,
  author =       "William Gropp and Ewing Lusk",
  key =          "MPICH",
  title = 	 "{MPICH} {W}eb page",
  note = 	 "http://www.mcs.anl.gov/mpi/mpich",
}

@Article{ MPI-final,
	Title = "{MPI}: A Message-Passing Interface Standard",
        Journal = "International J. Supercomputing Applications",
        Volume  = 8,
	Number = "3/4",
	Year = 1994,
	Key = "MPI Standard - final"
}

@Unpublished{ npb-web-page,
  key =          "NAS Parallel Benchmarks",
  title = 	 "{NAS} {P}arallel {B}enchmarks {W}eb page",
  note = 	 "http://www.nas.nasa.\-gov/\-NAS/\-NPB/\-index.html",
  year =	 1996,
  month =	 Dec
}



@book{ george81,
	TITLE = "Computer Solution of Large Sparse Positive Definite Systems",
	AUTHOR= "Alan George and Joseph W. Liu",
	PUBLISHER = "Prentice-Hall",
	YEAR      = 1981,
	KEY       = "SparseDirect"
        }

@book{ p4-book,
	TITLE     = "Portable Programs for Parallel Processors",
	PUBLISHER = "Holt, Rinehart, {and} Winston",
	YEAR      = 1987,
	AUTHOR    = "James Boyle and Ralph Butler and Terrence Disz and
	             Barnett Glickfeld and Ewing Lusk and Ross Overbeek and
		     James Patterson and Rick Stevens",
	KEY       = "P4Book"
        }

@Article{stones,
  author = 	"H. L. Stone",
  title = 	"Iterative solution of implicit approximations of multidimensional partial differential equations",
  journal = 	"SIAM J. Numerical Analysis",
  pages = "87--113",
  volumne = 5,
  Year =        1968
}


@Article{parallelstones,
  author = 	"J. S. Reeve and A. D. Scurr and J. H. Merlin",
  title = 	"Parallel versions of {S}tones strongly implicit algorithm",
  journal = 	"Concurrency and Computation: Practice and Experience",
  pages = "1049--1062",
  volumne = 13,
  Year =        2001
}

@Article{p4-paper,
  author = 	"Ralph Butler and Ewing Lusk",
  title = 	"Monitors, Messages, and Clusters:  {T}he p4 Parallel
		 Programming System",
  journal = 	"Journal of Parallel Computing",
  note = 	"To appear (Also Argonne National Laboratory Mathematics and
                 Computer Science Division preprint P362-0493)",
  Year =        1993
}

@TechReport(picl,
    Author=      "G.~A.~Geist and Michael~T.~Heath and B.~W.~Peyton and
	          Patrick~H.~Worley",
    Title=       "{PICL}: A portable instrumented communications library",
    Institution= "Oak Ridge National Laboratory",
    Number=      "TM-11130",
    Year=        "1990",
    Key=         "PICL")


@TechReport( upshot,
    Author=      "Virginia Herrarte and Ewing Lusk",
    Title=       "Studying Parallel Program Behavior with {U}pshot",
    Institution= "Argonne National Laboratory",
    Number=      "ANL-91/15",
    Month=       AUG,
    Year=        "1991",
    Key=         "Upshot" )

@TechReport( p4-manual,
    Author=      "Ralph Butler and Ewing Lusk",
    Title=       "User's Guide to the p4 Parallel Programming System",
    Institution= "Argonne National Laboratory",
    Number=      "ANL-92/17",
    Month=       Oct,
    Year=        "1992",
    Key=         "p4-Manual" )

@inproceedings{oldparti,
    Author    =      "Gagan Agrawal and Alan Sussman and Joel Saltz",
    Title     =       "Compiler and Runtime Support for Unstructured and Block
                  Structured Problems",
    BOOKTITLE = "Proceedings of Supercomputing '93",
    pages     = "578--587",
    YEAR      = "1993"
}

@article{parti2,
    Author    =      "S. S. Mukherjee and S. D. Sharma and
                      M. DF. Hill and J. R. Larus and A. Rogers and J. Saltz",
    Title     =       "Efficient Support for Irregular Applications on
                  Distributed Memory Machines",
    journal   = "ACM SIGPLAN Notices",
    YEAR      = "1995",
    pages     = "68-79",
    volume    = "30",
    number    = "8"
}


@article{parti3,
    Author    =      "J. Saltz and R. Mirchandaney and K. Crowley",
    Title     =       "Run-Time Parallelization and Scheduling of Loops",
    journal   = "IEEE Trans. Computers",
    YEAR      = "1991",
    pages     = "604-612",
    volume    = "40",
    number    = "5"
}

@inproceedings{disz-lusk:wamtrace,
	AUTHOR = "Terrence Disz and Ewing Lusk",
	TITLE = "A Graphical Tool for Observing the Behavior of Parallel
 		Logic Programs",
	BOOKTITLE = "Proceedings of the 1987 Symposium on Logic Programming",
	YEAR = "1987",
	PAGES = "46--53"
}
@inproceedings{gorlick-kesselman:gauge,
	AUTHOR = "Michael Gorlick and Carl Kesselman",
	TITLE = "Timing {Prolog} programs without Clocks",
	BOOKTITLE = "Proceedings of the 1987 Symposium on Logic Programming",
	YEAR = "1996",
        publisher = "Birkhauser"
}


@TechReport( aztec,
    Author = "Scott A. Hutchinson and John N. Shadid and Ray S. Tuminaro",
    Title  = "Aztec User's Guide Version 1.1",
    Institution = "Sandia National Laboratories",
    Month  = Oct,
    Year   = 1995,
    Number = "SAND95/1559"
    )

@TechReport( aztec2,
    Author = "Ray S. Tuminaro and Micheal Heroux and Scott A. Hutchinson and John N. Shadid",
    Title  = "Official {Aztec} User's Guide Version 2.1",
    Institution = "Sandia National Laboratories",
    Year   = 1999,
    )

@Book{taylor-chandy:pcn,
    Author = "Chandy, M. and Taylor, S.",
    Title = "An Introduction to Parallel Programming",
    Year = 1991,
    Publisher = "Jones and Bartlett"}

@Book{foster-taylor:strand,
    Title = "Strand:  New Concepts in Parallel Programming",
    Author = "Ian Foster and Stephen Taylor",
    Publisher = "Prentice-Hall",
    Adress = " Englewood Cliffs, New Jersey",
    Year = 1990}

@article{aurora,
	AUTHOR = "E. Lusk and R. Butler and T. Disz and R. Olson and
		R. Overbeek and R. Stevens and D.H.D. Warren and
		A. Calderwood and P. Szeredi and S. Haridi and
		P. Brand and M. Carlsson and A. Ciepielewski and
		B. Hausman",
	TITLE = "The Aurora OR-Parallel Prolog System",
	JOURNAL = "New Generation Computing",
	VOLUME = 7,
	NUMBER = 3,
	YEAR = 1990,
	PAGES = "243--271"
}

@Techreport{roo,
    Author = "E. Lusk and W. McCune and J. Slaney",
    Title = "Roo---a Parallel Theorem Prover",
    Institution = "Argonne National Laboratory",
    Number = "MCS--TM--149",
    Year = 1991}

@Techreport{heath-etheridge:vppp,
    Author = "M. T. Heath and J. A. Etheridge",
    Title = "Visualizing the Performance of Parallel Programs",
    Institution = "Oak Ridge National Laboratory",
    Number = "ORNL TM-11813",
    Year = 1991}


@Techreport{chem:vis,
  Author = "Ewing L. Lusk",
  Title = "Performance Visualization for Parallel Programs",
  Institution = "Argonne National Laboratory",
  Number = "ANL/MCS--P287--0192",
  Year = 1991,
  Note = "(to appear in {\em Theoretica Chimica Acta})"
  }

@Techreport{picltrace,
    Author = "P.~H.~Worley",
    Title = "A new {PICL} trace file format",
    Institution = "Oak Ridge National Laboratory",
    Number = "ORNL TM-12125",
    Month  = JUN,
    Year = 1992}

@inproceedings{hideo,
	AUTHOR = "Gary Olsen and Carl Woese and Ray Hagstrom and Hideo Matsuda
		  and Ross Overbeek",
	TITLE = "Inference of Phylogenetic trees using maximum likelihood",
	BOOKTITLE = "Proceedings of the First Intel Delta Applications
		     Workshop",
	YEAR = "1992",
	PAGES = "247--262"
}

@InProceedings(DW90,
    Author=      "M. Dryja and O. Widlund",
    Title=       "Towards a Unified Theory of Domain Decomposition Algorithms
                  for Elliptic Problems",
    Booktitle=   "Third International Symposium on Domain Decomposition
                  Methods",
    Editor=      "T. F. Chan and R. Glowinski
                 and J. P\'eriaux and O. B. Widlund",
    Year=        "1990",
    Pages=       "3-21",
    Publisher=   "SIAM",
    Address=     "Philadelphia",
    Annote=      "Additive {S}chwarz.  Surveys recent (1989) results; some
		  comments on 3-d and how many approaches may be cast in
		  the form of additive {S}chwarz-subspace form.  58
	          references, good introduction to the theory.  No
	          computations",
    Key=         "DryjaWidlund90 !AS")

@UnPublished(rosing,
    Author=    "Matt Rosing and Joel Saltz",
    Title=     "Low Latency Messages on Distributed Memory Multiprocessors",
    Key=       "LowLatency",
    Note=      "manuscript, 1992")

@techreport{jp:incomplete,
         AUTHOR = "Mark T. Jones and Paul E. Plassmann",
        TITLE = "An Improved Incomplete {C}holesky Factorization",
        INSTITUTION = "Argonne National Laboratory",
        ADDRESS = "Argonne, IL",
        TYPE = "Preprint",
        NOTE = "(to appear in {\em ACM Trans. on Mathematical Software, 1995})",
        NUMBER = "MCS-P206-0191",
        YEAR = "1991",
	KEY = "jones" }

@incollection{jp:ima,
  AUTHOR = "Mark Jones and Paul Plassmann",
  title = "The Efficient Parallel Iterative Solution
  of Large Sparse Linear Systems",
  booktitle = "Graph Theory and Sparse Matrix Computation",
  publisher = "Springer-Verlag",
  series = "The IMA Volumes in Mathematics and Its Applications",
  editor = "Alan George and John Gilbert and Joseph W.H.~Liu",
  volume = "56",
  year = "1993",
  pages="229--245"
  }

@Article{ pw98,
  AUTHOR = "M. Pernice and H. F. Walker",
  TITLE = "{NITSOL}: A {Newton} Iterative Solver for Nonlinear Systems",
  journal =	 "SIAM J. Sci. Stat. Comput.",
  year =	 1998,
  volume =	 19,
  pages =	 "302--318"
}

@TechReport( ysmp83,
    KEY       =   "Eisenstat",
    AUTHOR    =   "S.~C.~Eisenstat and H.~C.~Elman and M.~H.~Schultz and
		  A.~H.~Sherman",
    TITLE     =   "The (New) {Y}ale {S}parse {M}atrix {P}ackage",
    INSTITUTION=  "Department of Computer Science, Yale University",
    NUMBER    =   "YALE/DCS/RR-265",
    MONTH     =    APR,
    YEAR      =   "1983"
    )

@inbook( ysmp84,
    AUTHOR    =   "S.~C.~Eisenstat and H.~C.~Elman and M.~H.~Schultz and
		  A.~H.~Sherman",
    chapterTITLE     =   "The (New) {Y}ale {S}parse {M}atrix {P}ackage",
    title = "Elliptic Problem Solvers II",
    publisher = "Academic Press",
    pages = "45--52",
    editors = "G. Birkhoff and A. Schoenstadt",
    YEAR      =   "1984"
    )

@TechReport{ sparsekit,
    KEY       = "Saad",
    AUTHOR    = "Youcef Saad",
    TITLE     = "{SPARSKIT}, a basic tool kit for sparse matrix computations",
    INSTITUTION= "Center for Supercomputing Research and Development,
	          University of Illinois at Urbana-Chanpaign",
    NUMBER    = "1029",
    YEAR      = 1990
    }

@TechReport( pde-user-ref,
    Author = "Barry F. Smith",
    Title  = "Extensible {PDE} Solvers Package Users Manual",
    Institution = "Argonne National Laboratory",
    Month  = SEP,
    Year   = 1994,
    Number = "ANL-93/40",
    Key    = "Smith94 ! PDE"
    )

@TechReport( bs-user-ref,
    Author = "Mark T. Jones and Paul E. Plassmann",
    Title  = "{BlockSolve95} Users Manual: Scalable Library Software for
                  the Parallel Solution of Sparse Linear Systems",
    Institution = "Argonne National Laboratory",
    Month  = DEC,
    Year   = 1995,
    Number = "ANL-95/48"
    )

@TechReport( snes-user-ref,
    Author = "William D. Gropp and Lois Curfman McInnes and Barry F. Smith",
    Title  = "Using the {S}calable {N}onlinear {E}quations {S}olvers Package",
    Institution = "Argonne National Laboratory",
    Month  = Feb,
    Year   = 1995,
    Number = "ANL/MCS-TM-193",
    Key    = "GroppMcInnesSmith95 ! SNES"
    )

@TechReport( sles-user-ref,
    Author = "William D. Gropp and Barry F. Smith",
    Title  = "{S}implified {L}inear {E}quation {S}olvers Users Manual",
    Institution = "Argonne National Laboratory",
    Month  = MAR,
    Year   = 1993,
    Number = "ANL-93/8",
    Key    = "GroppSmith93 ! SLES"
    )
@TechReport( chameleon-user-ref,
    Author = "William D. Gropp and Barry F. Smith",
    Title  = "Chameleon Parallel programming tools Users Manual",
    Institution = "Argonne National Laboratory",
    Month  = MAR,
    Year   = 1993,
    Number = "ANL-93/23",
    Key    = "GroppSmith93 ! Chameleon"
    )

@Article( euclid2,
    Author = "D. Hysom and A. Pothen",
    Title  = "A Scalable Parallel Algorithm For Incomplete Factor Preconditioning",
    Journal = "SIAM J. Sci. Comput.",
    Volume  = 22,
    Number  = 6,
    Pages   = "2194--2215"
)

@TechReport( euclid1,
    Author = "D. Hysom and A. Pothen",
    Title  = "Euclid User Manual (A Scalable {ILU} Preconditioning Library for the Parallel Solution of Sparse Linear Systems)",
    Institution = "Old Dominion University",
    Year   = "2001"
    )

@TechReport( ksp-user-ref,
    Author = "William D. Gropp and Barry F. Smith",
    Title  = "Users Manual for {KSP}: Data-Structure-Neutral Codes Implementing {K}rylov Space Methods",
    Institution = "Argonne National Laboratory",
    Month  = AUG,
    Year   = 1993,
    Number = "ANL-93/30",
    Key    = "GroppSmith93 ! KSP"
    )


@TechReport( mpi-chameleon,
    Author = "William D. Gropp and Ewing Lusk",
    Title  = "A Test Implementation of the {MPI} Draft Message-Passing
	     Standard",
    Institution = "Argonne National Laboratory",
    Month  = DEC,
    Year   = 1992,
    Number = "ANL-92/47",
    Key    = "GroppLusk92 ! MPI"
    )

@TechReport( blockcomm-fortran,
    Author = "William D. Gropp",
    Title  = "Block{C}omm for {F}ortran",
    Institution = "Argonne National Laboratory",
    Month  = MAY,
    Year   = 1993,
    Number = "ANL-93/00 (to appear)",
    Key    = "Gropp93 ! BlockComm"
    )

@TechReport( autodocument,
    Author = "William D. Gropp",
    Title  = "Automatic documentation of {C} programs",
    Institution = "Argonne National Laboratory",
    Month  = MAY,
    Year   = 1993,
    Number = "ANL-93/00",
    Key    = "Gropp93 ! Autodoc"
    )

@TechReport( zipcode,
    Author = "Anthony Skjellum and Steven G. Smith and Charles H Still and
Alvin P. Leung and Manfred Morari",
    Title  = "The {Z}ipcode message-passing system",
    Institution = "Lawrence Livermore National Laboratory",
    Month  = SEP,
    Year   = 1992,
    Number = "Unpublished",
    Key    = "Skjellum92 ! Zipcode" )

@Article( paragraph,
    Author = "Michael T. Heath and Jennifer Etheridge Finger",
    Title  = "Visualizing performance of parallel programs",
    Journal = "IEEE Software",
    Volume  = 8,
    Number  = 5,
    Month   = SEP,
    Year    = 1991,
    Pages   = "29--39",
    Key     = "Heath91 ! Paragraph" )

@article( gropp90,
    Author = "William Gropp and Edward Smith",
    Title  = "Computational Fluid Dynamics on Parallel Processors",
    Journal = "Computers and Fluids",
    Volume  = 18,
    Year    = 1990,
    Pages   = "289--304",
    Key     = "Gropp90 ! performance" )

@article( foster92,
    Author = "Ian Foster and William Gropp and Rick Stevens",
    Title  = "The parallel scalability of the spectral transform method",
    Journal = "Monthly Weather Review",
    Volume  = 120,
    Year    = 1992,
    Pages   = "835--850",
    Key     = "Foster92 ! performance" )

@INBOOK{fgn,
        AUTHOR="R. Freund and G. H. Golub and N. Nachtigal",
        TITLE="Iterative Solution of Linear Systems",
        SERIES="Acta Numerica",
        YEAR="1992",
        PUBLISHER="Cambridge University Press",
        PAGES="57--100"
                }

@TechReport( nachtigal90,
    Author = "No{\"e}l M. Nachtigal and Satish C. Reddy and Lloyd N. Trefethen",
    Title  = "How Fast are Nonsymmetric Matrix Iterations?",
    Institution = "Massachusetts Institute of Technology",
    Month  = MAR,
    Year   = 1990,
    Number = "90-2",
    Key    = "Nachtigal | Krylov"
    )
@article{nachtigal1992fnm,
  title={How Fast are Nonsymmetric Matrix Iterations?},
  author={Nachtigal, N.M. and Reddy, S.C. and Trefethen, L.N.},
  journal={SIAM Journal on Matrix Analysis and Applications},
  volume={13},
  pages={778},
  year={1992},
  publisher={SIAM}
}
@techreport{embree1999descriptive,
  title={How descriptive are {GMRES} convergence bounds},
  author={Embree, M.},
  year={1999},
  number={08},
  institution={Oxford University Computing Laboratory}
}

@Article{ vorst92,
  author = 	 "H. van der Vorst",
  title = 	 "Bi-{CGSTAB}: A fast and smoothly converging varient of
		  {Bi-CG} for the solution of nonsymmetric linear systems",
  journal =	 "SIAM J. Sci. Stat. Comput.",
  year =	 1992,
  volume =	 13,
  pages =	 "631--644"
}

@Article{ eisenstat81,
  author = 	 "S. Eisenstat",
  title = 	 "Efficient Implementation of a Class of {CG} Methods",
  journal =	 "SIAM J. Sci. Stat. Comput.",
  year =	 1981,
  volume =	 2,
  pages =	 "1--4"
}
n
@Manual( ibm-essl,
    Title = "{E}ngineering and {S}cientific {S}ubroutine {L}ibrary Version 2:
Guide and Reference",
    Organization = "IBM",
    Year  = 1992,
    Key   = "IBM-ESSL"
    )

@Manual( IBM-EUI,
    Title = "{IBM} {AIX} Parallel Environment Parallel Programming Subroutine
Reference Release 2.0",
    Organization = "IBM",
    Month = JUN,
    Year  = 1994,
    Key   = "IBM-EUI"
    )

@Manual( IBM-EUIH,
    Title = "Using {EUIH}: An Experimental {EUI} Implementation",
    Organization = "IBM",
    Author = "Peter Hochschild",
    Year  = 1993,
    Key   = "IBM-EUIH"
    )

@TechReport{ MPI,
	Title = "Document for a Standard Message-Passing Interface",
	Author = "Message Passing Interface Forum",
	Institution =  "University of Tennessee",
	Number = "CS-93-214",
	Month  = NOV,
	Year = 1993,
	Key = "MPI Standard"
}

@Unpublished{ mpi-final-web,
  author = 	 "Message Passing Interface Forum",
  title = 	 "{MPI}: A Message-Passing Interface Standard",
  note = 	 "http://www.mcs.anl.gov/mpi/mpi-report/mpi-report.html",
  year =	 1994,
  month =	 MAY
}


@Book{hockney-jesshope,
  author = 	 "R. W. Hockney and C. R. Jesshope",
  title = 	 "Parallel Computers 2",
  publisher = 	 "Adam Hilger",
  year = 	 "1988"
}

@Book{cm-fortran,
  author = 	 "{Thinking Machines Corporation}",
  title = 	 "Users Manual for CM-Fortran",
  publisher = 	 "Thinking Machines Corporation",
  year = 	 1993
}

@TechReport{ Chang93,
	Title = "Experiments and Bounds on Block Diagonal Preconditioning",
	Author = "Mark Yan-Ming Chang and Martin H. Schultz",
	Institution = "Yale Department of Computer Science",
	Number = "YALEU/DCS/RR-994",
	Month  = NOV,
	Year   = 1993,
	Key    = "BDD|diag" }

@inproceedings{gropplevine93,
	AUTHOR = "N. Galbreath and W. Gropp and D. Levine",
	TITLE = "Applications-Driven Parallel {I/O}",
	BOOKTITLE = "Proceedings of Supercomputing '93",
	YEAR = "1993",
	PAGES = "462--471"
}

@book{ Siegle85,
AUTHOR = "H. J. Siegel",
TITLE  = "Interconnection Networks for Large Scale Parallel Processing",
PUBLISHER = "Lexington Books",
YEAR      = 1985,
KEY       = "Network Comparison"
}

@article{ Lawrie75,
AUTHOR = "D. H. Lawrie",
TITLE  = "Access and alignment of data in an array processor",
JOURNAL = "IEEE Transactions on Computers",
VOLUME  = "C-24",
NUMBER  = 12,
MONTH   = DEC,
YEAR    = 1975,
PAGES   = "1145--1155",
KEY     = "Omega Network"
}

@book{ Lamport86,
AUTHOR = "Leslie Lamport",
TITLE  = "{LaTeX}: A document preparation system",
PUBLISHER = "Addison-Wesley",
YEAR      = 1986,
KEY       = "Latex Manual"
}

@TechReport( tohtml,
    Author=      "William Gropp",
    Title=       "Users Manual for tohtml: Producing true hypertext
documents from {LaTeX}",
    Institution= "Argonne National Laboratory",
    Number=      "ANL/MCS-TM-00",
    Month=       JAN,
    Year=        "1995",
    Key=         "tohtml" )

@TechReport( doctext,
    Author=      "William Gropp",
    Title=       "Users Manual for doctext:
Producing documentation from {C} source code",
    Institution= "Argonne National Laboratory",
    Number=      "ANL/MCS-TM-00",
    Month=       JAN,
    Year=        "1995",
    Key=         "doctext" )

@TechReport( bfort,
    Author=      "William Gropp",
    Title=       "Users Manual for bfort:
Producing {F}ortran interfaces to {C} source code",
    Institution= "Argonne National Laboratory",
    Number=      "ANL/MCS-TM-208",
    Month=       MAR,
    Year=        "1995",
    Key=         "doctext" )


@InProceedings{ gropp-lusk:unix-tools,
    Author=     "William Gropp and Ewing Lusk",
    Title=      "Scalable {U}nix Tools on Parallel Processors",
    Booktitle=  "Proceedings of the 1994 Scalable High Performanc Computing
		  Conference",
    Publisher=  "IEEE",
    Pages    =  "56--62"
    }

@inproceedings{jp:bell_prize,
  AUTHOR = "Mark Jones and Paul Plassmann",
    TITLE = "Solution of Large, Sparse Systems of Linear Equations
    in Massively Parallel Applications",
    booktitle = "Proceedings of Supercomputing '92",
    publisher = "IEEE Computer Society Press",
    YEAR = "1992",
    Pages = "551--560"
    }


@comment{WEB, CWEB references (for doctext)}
@TechReport{ web,
  author = 	 "Donald E. Knuth",
  title = 	 "The {\tt WEB} system of structured documentation",
  institution =  "Computer Science Department, Stanford University",
  year = 	 1983,
  number =	 980,
  month =	 SEP
}

@Article{ literatepgm,
  author = 	 "Donald E. Knuth",
  title = 	 "Literate Programming",
  journal =	 "Computer Journal",
  year =	 1984,
  volume =	 27,
  number =	 2,
  pages =	 "91--111"
}

@Unpublished{ cweb-code,
  author = 	 "Silvio Levy and Donald E. Knuth",
  title = 	 "CWEB",
  note = 	 "CWEB is available at ftp://pip.shsu.edu/tex-archive/web/c\_cpp/cweb"
}

@Article( componentware:94,
    AUTHOR  = "Jon Udell",
    TITLE   = "Componentware",
    JOURNAL = "Byte",
    VOLUME  = "May",
    PAGES   = "46-56",
    YEAR    = 1994,
    KEY     = "Udell94 ! componentware"
    )

@article{jp:scalable,
  AUTHOR = "Mark Jones and Paul Plassmann",
  TITLE = "Scalable Iterative Solution of Sparse Linear Systems",
  Journal = "Parallel Computing",
  Volume = "20",
  Number = "5",
  Month = "May",
  YEAR = "1994",
  Pages = "753--773"
  }

@article{jp:pcolor,
  AUTHOR = "Mark T. Jones and Paul E. Plassmann",
  Title = "A Parallel Graph Coloring Heuristic",
  journal = "SIAM J. Sci. Comput.",
  Volume = "14",
  Number = "3",
  Pages = "654-669",
  Year = "1993",
  }

@TechReport( block_solve,
    AUTHOR      = "Mark T. Jones and Paul E. Plassmann",
    TITLE       = "{B}lock{S}olve v1.1:  Scalable Library Software for
                   the Parallel Solution of Sparse Linear Systems",
    INSTITUTION = "Argonne National Laboratory",
    YEAR        = 1992,
    NUMBER      = "ANL-92/46",
    KEY     = "JonesPlassmann92 ! block_solve"
    )

@book{ optguide93,
   TITLE	= "Optimization Software Guide",
   AUTHOR	= "Jorge J. Mor\'{e} and Stephen J. Wright",
   PUBLISHER	= "SIAM Publications",
   ADDRESS	= "Philadelphia",
   YEAR		= 1993,
   }

@inproceedings{ more84,
   AUTHOR	= "Jorge J. Mor\'{e} and Danny C. Sorenson and
		   Burton S. Garbow and Kenneth E. Hillstrom",
   TITLE	= "The {MINPACK} Project",
   BOOKTITLE	= "Sources and Development of Mathematical Software",
   EDITOR	= "Wayne R. Cowell",
   YEAR		= 1984,
   PAGES	= "88-111"
   }

@inproceedings{ supercond,
   AUTHOR	= "Lois Curfman Mc{I}nnes and Mario Palumbo",
   TITLE	= "Parallel Solution of the Anisotropic
		   {G}inzburg-{L}andau Model",
   BOOKTITLE	= "Proceedings of the Toward Teraflop Computing and New
		   Grand Challenge Applications Conference",
   MONTH	= Feb,
   YEAR		= "1994",
   KEY     	= "McInnesPalumbo94 ! superconductivity "
   }

@Article( steihaug:83,
    AUTHOR  = "Trond Steihaug",
    TITLE   = "The Conjugate Gradient Method and Trust Regions in
               Large Scale Optimization",
    JOURNAL = "SIAM J. Numer. Anal.",
    VOLUME  = 20,
    YEAR    = 1983,
    PAGES   = "626-637",
    KEY     = "steihaug92 ! trust_region"
    )

@Unpublished( preosti:93,
    AUTHOR  = "Gianfranco Preosti",
    TITLE   = " ",
    NOTE    = "Unpublished information, {P}hysics {D}epartment,
               {P}urdue {U}niversity",
    YEAR    = 1993,
    KEY     = "preosti93 ! GL-tilt3d"
    )

@Unpublished( more:93,
    AUTHOR  = "Jorge J. Mor\'{e}",
    TITLE   = " ",
    NOTE    = "Unpublished information, {M}athematics and
               {C}omputer {S}cience {D}ivision,
               {A}rgonne {N}ational {L}aboratory",
    YEAR    = 1993,
    KEY     = "more93 ! MINPACK-2"
    )

@TechReport( minpack2test,
    AUTHOR      = "Brett M. Averick and Richard G. Carter and
                   Jorge J. Mor\'{e}",
    TITLE       = "The {MINPACK-2} Test Problem Collection",
    INSTITUTION = "Argonne National Laboratory",
    YEAR        = 1991,
    NUMBER      = "ANL/MCS-TM-150",
    KEY     = "more91 ! MINPACK-2"
    )

@TechReport{ hohmann:94,
    AUTHOR      = "Andreas Hohmann",
    TITLE       = "Object Oriented Design of Multilevel {N}ewton and
		   Continuation Methods",
    INSTITUTION = "Konrad-Zuse-Zentrum fur Informationstechnik Berlin",
    YEAR        = 1994,
    NUMBER      = "SC-94-4",
    KEY         = "Hohmann94"
    }

@TechReport{ meza:94,
    AUTHOR      = "Juan C. Meza",
    TITLE       = "{OPT}++:  An Object-Oriented Class Library for
		  Nonlinear Optimization",
    INSTITUTION = "Sandia National Laboratory",
    YEAR        = 1994,
    NUMBER      = "SAND94-8225",
    KEY         = "Meza94"
    }

@book{dennis:83,
   AUTHOR       = "Dennis Jr., J. E. and Robert B. Schnabel",
   TITLE        = "Numerical Methods for Unconstrained Optimization and
                   Nonlinear Equations",
   PUBLISHER    = "Prentice-Hall",
   ADDRESS      = "Englewood Cliffs, NJ",
   YEAR         = 1983}
   }

@TechReport{ more:92,
    AUTHOR      = "Jorge J. Mor\'{e} and David Thuente",
    TITLE       = "Line search algorithms with guaranteed sufficient decrease",
    INSTITUTION = "Mathematics and Computer Science Division, Argonne National Laboratory",
    YEAR        = 1992,
    NUMBER      = "MCS-P330-1092",
    }

@Article{ brownsaad:90,
  author = 	 "Peter N. Brown and Youcef Saad",
  title = 	 "Hybrid {K}rylov Methods for Nonlinear Systems of Equations",
  journal =	 "SIAM J. Sci. Stat. Comput.",
  year =	 1990,
  volume =	 11,
  pages =	 "450-481"
}

@Book{using-mpi,
  author = 	 "William Gropp and Ewing Lusk and Anthony Skjellum",
  title = 	 "Using MPI: Portable Parallel Programming with the Message
		  Passing Interface",
  publisher = 	 "MIT Press",
  year = 	 1994
}

@Book{using-mpi2,
  author = 	 "William Gropp and Ewing Lusk  and Rajeev Thakur",
  title = 	 "Using MPI 2: Advanced Features of the Message Passing Interface",
  publisher = 	 "MIT Press",
  year = 	 1999
}


@article{hs:52,
   author="Magnus R. Hestenes and Eduard Steifel",
   title="Methods of Conjugate Gradients for Solving Linear Systems",
   journal="J. Research of the National Bureau of Standards",
   year=1952,
   volume=49,
   pages="409-436"}

@article{ss:86,
   author="Youcef Saad and Martin H. Schultz",
   title="{GMRES}:  A Generalized Minimal Residual Algorithm
           for Solving Nonsymmetric Linear Systems",
   journal = "SIAM J. Sci. Stat. Comput.",
   year=1986,
   volume=7,
   pages="856-869"}

@article{so:89,
   author="Peter Sonneveld",
   title="{CGS}, A Fast {L}anczos-type Solver for Nonsymmetric Linear
          Systems",
   journal = "SIAM J. Sci. Stat. Comput.",
   year=1989,
   volume=10,
   pages="36-52"}

@article{v:92,
   author="{H. A.} {van der Vorst}",
   title="{B}i{CGSTAB}:  A fast and smoothly converging variant
          of {B}i{CG} for the solution of nonsymmetric linear
                  systems",
   journal = "SIAM J. Sci. Stat. Comput.",
   volume=13,
   year=1992,
   pages="631-644"}

@article{f:93,
   author="Roland W. Freund",
   title="A Transpose-Free Quasi-Minimal Residual Algorithm for
          Non-{H}ermitian Linear Systems",
   journal = "SIAM J. Sci. Stat. Comput.",
   volume=14,
   year=1993,
   pages="470-482"}

@article{ish:89,
  author="S. Ishizuka",
  title="An Experimental Study on Extinction and
         Stablity of Tubular Flames",
  journal="Combustion and Flame",
  volume=75,
  year=1989,
  pages="367-379"}

@book{williams89,
  TITLE = "Combustion Theory, The
           Fundamental Theory of Chemically Reacting Flow Systems",
  AUTHOR= "F.A. Williams",
  PUBLISHER = "Addison-Wesley",
  YEAR      = 1989,
  pages     = "367-379"}

@book{RA75,
author = {R. Aris},
title = {The Mathematical Theory of Diffusion and
Reaction in Permeable Catalysts},
publisher = {Oxford},
year = {1975}
}

@book{Bebernes89,
author = {J. Bebernes and D. Eberly},
title = {Mathematical Problems from Combustion Theory},
publisher = {Springer-Verlag},
series = {Applied Mathematical Sciences 83},
year = {1989}
}

@inproceedings{Kikuchi89,
author = {F. Kikuchi},
booktitle = { Computing Methods in Applied Sciences and Engineering},
editor = {R. Glowinski and J. L. Lions},
publisher = {Springer-Verlag},
series = {Lecture Notes in Mathematics},
title = {Finite element approximations to bifurcation
problems of turning point type},
year = {1977}
}

@article{RG85,
   author="R. Glowinski and H.B. Keller and L. Reinhart",
   title="Continuation-conjugate Gradient Methods fo the Least Squares
                  Solution of Nonlinear Boundary Problems",
   journal = "SIAM J. Sci. Stat. Comput.",
   volume=6,
   year=1985,
   pages="793-832"}

@InProceedings{whitfield91,
  author    = "D. Whitfield and L. Taylor",
  title     = "Discretized {N}ewton-Relaxation Solution of High
                  Resolution Flux-Difference Split Schemes",
  booktitle = "Proceedings of the AIAA Tenth Computational Fluid Dynamics Conference",
  misc      = "AIAA-91-1539",
  pages     = "134-145",
  year      = 1991,
}


@INPROCEEDINGS{Quinlan1,
 AUTHOR=    "M. Lemke and D. Quinlan",
 TITLE=     "P++, a {C}++ Virtual Shared Grids Based Programming
             Environment for Architecture-Independent Development of
                  Structured Grid Applications",
 BOOKTITLE= "CONPAR/VAPP V, Lecture Notes in Computer Science",
 PUBLISHER= "Springer Verlag",
 YEAR=      "1992"
}


@INPROCEEDINGS{Quinlan2,
 AUTHOR=    "R. Parsons and D. Quinlan",
 TITLE=     "A++/{P}++ Array Classes for Architecture Independent Finite
            Difference Computations",
 BOOKTITLE= "Proceedings of the Second Annual Object-Oriented Numerics
             Conference",
 YEAR=      "1994"
}

% *****  Overview of functionality in Diffpack

@inbook{DPoverview,
 author = "Bruaset, A. M. and Langtangen, H. P.",
 booktitle = "Mathematical Models and Software Tools in Industrial
           Mathematics",
 title = "A Comprehensive Set of Tools for Solving Partial Differential
           Equations; {Diffpack}",
 publisher = "Birkh{\"{a}}user",
 pages = "61--90",
 year = 1997}


% *****  Short overview of Diffpack

@incollection{DPoverview2,
 author = "Bruaset, A. M. and Langtangen, H. P.",
 editor = "A. Sydow",
 booktitle = "Proceedings of the 15th IMACS World Congress
              on Scientific Computation, Modelling and Applied Mathematics",
 title = "Diffpack: A Software Environment for Rapid Prototyping of
          {PDE} Solvers",
 pages = "553--558",
 volume = 4,
 year = 1997}


% *****  Comprehensive documentation of Diffpack and
%        associated numerical methods:




@Book{DPbook,
  author =  "H. P. Langtangen",
  title =   "Numerical Solution of Partial Differential Equations;
             Models, Algorithms and Software. Part I",
  series =  "Lecture Notes in Computational Science and Engineering",
  publisher =    "Springer-Verlag",
  year =         "1998"
}

% *****  Design issues of the linear solvers in Diffpack, serves also as a
%        collection of examples on O-O in numerical computing

@article{AmbHpl97a,
     author =   "A. M. Bruaset and H. P. Langtangen ",
     title  =   "Object-Oriented Design of Preconditioned Iterative
                  Methods in {Diffpack}",
     journal = "Transactions on Mathematical Software",
     volume = {23 },
     pages = "50--80",
     year = {1997}
}

@misc{DPURL,
      author  = "{Diffpack Web page}",
      howpublished = "\url{http://www.diffpack.com}"
}


% *****  General intro to object-oriented numerics for "FORTRAN programmers"

@incollection{OONintro,
 author = "Arge, E. and Bruaset, A. M. and H. P. Langtangen",
 editor = "D{\ae}hlen, M. and Tveito, A.",
 booktitle = "Mathematical Models and Software Tools in Industrial Mathematics",
 title = "Object-Oriented Numerics",
 publisher = "Birkh{\"{a}}user",
 year = 1997}


% *****  Efficiency comparison: BLAS 1, Diffpack, C,
%        and finite element applications (F77 vs Diffpack)

@incollection{DPefficiency,
 author = "Arge, E. and Bruaset, A. M. and Calvin, P. B. and
          Kanney, J. F. and Langtangen, H. P. and Miller, C. T.",
 editor = "D{\ae}hlen, M. and Tveito, A.",
 booktitle = "Mathematical Models and Software Tools in Industrial
             Mathematics",
 title = "On the Efficiency of {C++} in Scientific Computing",
 publisher = "Birkh{\"{a}}user",
 pages = "91--118",
 year = 1997}

% ***** Parallel concept in Diffpack:

@incollection{DPparallel,
 author = "A.~M.~Bruaset and X. Cai and H. P. Langtangen and A. Tveito",
 editor = "Y. Ishikawa and R. R. Oldehoeft and J. V. W. Reynders and M. Tholburn",
 booktitle = "Scientific Computing in Object-Oriented Parallel Environments",
 title = "Numerical Solution of {PDE}s on Parallel Computers Utilizing
          Sequential Simulators",
 publisher = "Springer--Verlag",
 series = "Lecture Notes in Computer Science",
 pages = "161--168",
 year = 1997}

% ***** DD and ML methods in Diffpack:

@incollection{DPDDML,
 author = "A.~M.~Bruaset and H. P. Langtangen and G. W. Zumbusch",
 editor = "P. Bj{\o}rstad and M. Espedal and D. Keyes",
 booktitle = "Proceedings of the 9th Conference on Domain
              Decomposition",
 title = "Domain decomposition and multilevel methods in Diffpack",
 year = 1997}

@inproceedings{bsca98,
 author=    "David L. Bruhwiler and Svetlana G. Shasharina and John R. Cary and David Alexander",
 title=     "Design and Implementation of an Object Oriented C++ Library for Nonlinear Optimization",
 booktitle= "Proceedings of the SIAM Workshop on Object Oriented Methods for
             Inter-operable Scientific and Engineering Computing",
 editor=   "Mike Henderson et al.",
 pages=     "165-173",
 year=      "1998"
}



@BOOK{scalapack-user-guide,
       AUTHOR = "L. S. Blackford and J. Choi and A. Cleary and E. D'Azevedo and
                 J. Demmel and I. Dhillon and J. Dongarra and S. Hammarling and
                 G. Henry and A. Petitet and K. Stanley and D. Walker and R. C. Whaley",
       TITLE = "Sca{LAPACK} Users' Guide",
       PUBLISHER = "SIAM",
       ADDRESS = "Philadelphia, PA",
       YEAR = 1997
}

@INPROCEEDINGS{KEYES99,
        AUTHOR = "D. E. Keyes",
        TITLE = "How Scalable is Domain Decomposition in Practice?",
        BOOKTITLE = "Proceedings of the 11th International Conference on
                     Domain Decomposition Methods",
        EDITOR = "C.-H. Lai et al.",
        PUBLISHER = "Domain Decomposition Press, Bergen",
        NOTE = "To appear",
        YEAR = "1999" }

@article{fun3d,
author="W. K. Anderson and D. L. Bonhaus",
title="An implicit upwind algorithm for computing turbulent flows on unstructured grids",
journal="Computers and Fluids",
year=1994,
volume=23,
pages="1--21"
}

% -------------------------------------------------------------------------
% -------------------------------------------------------------------------

@Article(torczon,
    Author=      "J.~E.~Dennis and V.~Torczon",
    Title=       "Direct Search Methods on Parallel Machines",
    Journal=     "SIAM J. Optimization",
    Volume=      1,
    Pages=       "448--474",
    Year=        1991,
    Key=         "Torczon !PDS")

@InProceedings{WT91,
  author    = "D. L. Whitfield and L. K. Taylor",
  title     = "Discretized {N}ewton-Relaxation Solution of High
                  Resolution Flux-Difference Split Schemes",
  booktitle = "Proceedings of the AIAA Tenth Annual Computational Fluid Dynamics Conference",
  misc      = "AIAA-91-1539",
  pages     = "134-145",
  year      = 1991,
}

@article{EW96,
author="S. C. Eisenstat and  H. F. Walker",
title="Choosing the forcing terms in an inexact {N}ewton method",
journal="SIAM J. Scientific Computing",
volume=17,
year=1996,
pages="16--32"
}

@Book{thi93,
  author = 	 "{Thinking Machines Corporation}",
  title = 	 "Users Manual for CM-Fortran",
  publisher = 	 "Thinking Machines Corporation",
  year = 	 1993
}

@Book{mortonmayers94,
  author = 	 "K. W. Morton and D. F. Mayers",
  title = 	 "Numerical Solution of Partial Differential Equations",
  publisher = 	 "Press Syndicate of the University of Cambridge",
  year = 	 1994
}

@Book{heath97,
  author = 	 "Michael T. Heath",
  title = 	 "Scientific Computing: An Introductory Survey",
  publisher = 	 "McGraw Hill",
  year = 	 1997
}

@Article{captools96,
  author    = "C. S. Ierotheou and S. P Johnson and M. Cross and P. F. Leggett",
  title     = "Computer Aided Parallelization Tools ({CAPTools}) - Conceptual
               Overview and Performance on the Parallelization of Structured Mesh Codes",
  journal   = "Parallel Computing",
  volume    = 22,
  pages     = "197-226",
  year      = 1996
}


@Unpublished{ nastran-web-page,
  Author = "{MSC Software Corporation}",
  title = 	 "{NASTRAN} {W}eb page",
  note = 	 "See {\tt http://www.mechsolutions.com\-/products\-/nastran/}"
}

@Book{hpf,
  author = 	 "C. H. Koelbel and D. B. Loveman and R. S. Schreiber and G. L. Steele and M. E. Zosel",
  title = 	 "The High Performance Fotran Handbook",
  publisher = 	 "MIT Press",
  year = 	 "1994"
}

@inproceedings{keyes98,
        AUTHOR     = "D. E. Keyes",
        TITLE      = "Trends in Algorithms for Nonuniform Applications on Hierarchical Distributed Architectures",
        BOOKTITLE  = "Proceedings of the Workshop on Computational Aerosciences for the 21st Century",
        EDITORS    = "M. D. Salas and  W. K. Anderson",
        PPUBLISHER = "Elsevier",
        YEAR       = "1998"
}

@inproceedings{cca99,
        AUTHOR = "R. Armstrong and D. Gannon and A. Geist and K. Keahey and
                  S. Kohn and L. C. McInnes and S. Parker and B. Smolinski",
        TITLE = "Toward a Common Component Architecture for High-Performance
                 Scientific Computing",
        BOOKTITLE = "Proceedings of {High Performance Distributed Computing}",
        pages = "115--124",
        YEAR = "1999",
}


@inproceedings{pooma-atlas,
author = "S. Atlas and S. Banerjee and J. C. Cummings and P. J. Hinker and
M. Srikant and J. V. W. Reynders and M. Tholburn",
title = "{POOMA}: A High-Performance Distributed Simulation Environment for
Scientific Applications",
year = 1995,
month = "December",
Booktitle = "Supercomputing '95 Proceedings",
}

% ---------------------------------------------------------------------------------
% New bib entries for CRPC paper

@misc {
   mgnet-web-page,
   author = "Craig C. Douglas",
   title  = "{MGNet Web page}",
   note   = "See {\tt http://\-www.mgnet.org}"
}

@misc {
   dagh-web-page,
   author = "M. Parashar and J. C. Browne",
   title  = "{DAGH Web page}",
   note   = "\url{http://www.caip.rutgers.edu/~parashar/DAGH}"
}

@misc {
   parasol-web-page,
   key    = "PARASOL",
   title  = "{PARASOL Web page}",
   note   = "See {\tt http://\-www.genias.de/\-projects/\-parasol}"
}

@misc {
   pooma-web-page,
   author  = "{POOMA Web page}",
   note   = "See {\tt http://\-www.acl.lanl.gov/pooma}"
}

@misc {
   mudpack-web-page,
   author = "John C. Adams",
   title  = "{MUDPACK Web page}",
   note   = "See {\tt http://\-www.scd.ucar.edu/\-css/\-software/\-mudpack}"
}

@misc {
   pellpack-web-page,
   author = "Elias Houstis and John Rice and Apostolos Hadjidimos",
   title  = "{Parallel ELLPACK Web page}",
   note   = "See {\tt http://\-www.cs.purdue.edu/\-research/\-cse/\-pellpack/}"
}

@inproceedings{pellpack95,
        AUTHOR = "E. N. Houstis and S. B. Kim and S. Markus and P. Wu and
                  N. E. Houstis and A.C. Catlin and S. Weerawarana and T.S. Papatheodorou",
        TITLE = "Parallel {ELLPACK} Elliptic {PDE} Solvers",
        BOOKTITLE = "Proceedings of INTEL Supercomputer User's Group Conference",
        ADDRESS = "Albuquerque, NM",
        YEAR = "1995",
}

@misc {
   nhse-web-page,
   author  = "{National High-Performance Software Exchange Web page}",
   note   = "See {\tt http://\-www.nhse.org}"
}

@misc {
   doug-web-page,
   author = "Mark J. Hagger and Linda Stals",
   title  = "{DOUG Web Page}",
   note   = "See {\tt http://\-www.maths.bath.ac.uk/\~{ }parsoft/\-doug/}"
}

@TECHREPORT{doug97,
        AUTHOR="Mark J. Hagger",
        TITLE="Automatic Domain Decomposition on Unstructured Grids {(DOUG)}",
        INSTITUTION="Mathematical Sciences, University of Bath",
        YEAR="1997",
        NUMBER="9706",
        NOTE= "Advances in Computational Mathematics (to appear)"
        }

@misc {
   ug-web-page,
   author  = "{UG Web Page}",
   note   = "See {\tt http://\-cox.iwr.uni-heidelberg.de/\~{ }ug/}"
}

@Article{ug97,
  author    = "P. Bastian and K. Birken and K. Johannsen and S. Lang and N. Neuss and
               H. Rentz-Reichert and C. Wieners",
  title     = "{UG} -- A Flexible Software Toolbox for Solving Partial Differential Equations",
  journal =   "Computing and Visualization in Science",
  year      = "1997",
  volume    = "",
  pages     = ""
}

@misc {
   vecfem-web-page,
   author = "Lutz Grosz",
   title  = "{VECFEM Web Page}",
   note   = "See {\tt http://\-wwwmaths.anu.edu.au/\-\~{ }vecfem/}"
}

@misc{atlas-web-page,
   author = {R. Clint {Whaley et al.}},
   title  = {{ATLAS Web Page}},
   howpublished = {\url{http://math-atlas.sourceforge.net}}
}

@misc {fenics-web-page,
   author = "Todd Dupont and Johan Hoffman and Johan Jansson and Claes Johnson and Robert C. Kirby and Matthew Knepley and Mats Larson and Anders Logg and Ridgway Scott",
   title  = "{FEniCS Web Page}",
   note   = "\url{http://www.fenics.org}",
   year   = "2005"
}

@misc{matlab-web-page,
  author = {{The} {MathWorks}},
  title  = {Matlab},
  note   = {\url{http://www.mathworks.com}}
}

@misc {
   phipac-web-page,
   author = "J. A. Bilmes and K. Asanovic and R. Vudoc and S. Iyer and
             J. Demmel and C. Chin and D. Lam",
   title  = "{PHiPAC Web Page}",
   note   = "See {\tt http://\-www.icsi.berkeley.edu/\-\~{ }bilmes/\-phipac/}"
}

@inproceedings{kelp,
    Author    = "Stephan J. Fink and Scott B. Baden and Scott R. Kohn",
    title     = "Flexible Communication Mechanisms for Dynamic Structured Applications",
    BOOKTITLE = "Irregular '96",
    YEAR      = "1996"
}

@Unpublished{ kelp-web-page,
  author =       "Scott Baden",
  title = 	 "{KeLP} {W}eb page",
  note = 	 "See {\tt http://\-www-cse.ucsd.edu/\-groups/\-hpcl/\-scg/\-kelp/}",
}

@inproceedings {
   hk99,
   author    = "R. Hornung and S. Kohn",
   title     = "The Use of Object-Oriented Design Patterns in the {SAMRAI}
                Structured {AMR} Framework",
   booktitle = "Proceedings of the SIAM Workshop on Object-Oriented Methods
                for Inter-Operable Scientific and Engineering Computing",
   pages     = "235-244",
   year      = 1999,
   note      = "See \url{http://www.llnl.gov/CASC/samrai}"
}

@Unpublished{samrai-web-page,
  title   = "{SAMRAI} {W}eb Page",
  author = "Scott Kohn and Xabier Garaiza and Rich Hornung and Steve Smith",
  note      = "See {\tt http://www.llnl.gov/\-CASC/SAMRAI}",
}


@Misc{overture-web-page,
  author = "William Henshaw and Kyle Chand",
  title  = "{Overture} {W}eb page",
  howpublished = "\url{http://www.llnl.gov/CASC/Overture}"
}

@INPROCEEDINGS{ overture99,
 AUTHOR=    "D.L. Brown and W.D. Henshaw and D.J. Quinlan",
 TITLE=     "Overture: An Object-Oriented Framework for Solving Partial Differential Equations
             on Overlapping Grids",
 PUBLISHER= "SIAM",
 BOOKTITLE= "Proceedings of the SIAM Workshop on Object Oriented Methods for
                Inter-operable Scientific and Engineering Computing",
 year      = 1999,
 pages     = "215-224",
 note      = "See \url{http://www.llnl.gov/CASC/Overture}"
}

@inProceedings{diffpack,
    Author = "A.M. Bruaset and H.P. Langtangen",
    Title = "A Comprehensive Set of Tools for Solving Partial
                  Differential Equations: {D}iffpack",
    BOOKTITLE = "Numerical Methods and Software Tools in Industrial Mathematics",
    Year = 1997,
    pages = "61--90",
    Publisher = "Birkhauser Press"}

@Article{Dongarra:1984:ILA,
   author =       "J. J. Dongarra and F. G. Gustavson and A. Karp",
   title =        "Implementing Linear Algebra Algorithms for Dense
                  Matrices on a Vector Pipeline Machine",
   journal =      "SIAM Review",
   volume =       "26",
   number =       "1",
   pages =        "91--112",
   month =        jan,
   year =         "1984",
   coden =        "SIREAD",
   ISSN =         "0036-1445 (print), 1095-7200 (electronic)",
   mrclass =      "65F10 (65F30)",
   mrnumber =     "85c:65032",
   bibdate =      "Mon Jan 20 1997",
   abstract =     "The authors examine common implementations of linear
                  algebra algorithms, such as matrix-vector
                  multiplication, matrix-matrix multiplication and the
                  solution of linear equations. The different versions
                  are examined for efficiency on a computer architecture
                  which uses vector processing and has pipelined
                  instruction execution. By using the advanced
                  architectural features of such machines, one can
                  usually achieve maximum performance, and tremendous
                  improvements in terms of execution speed can be seen
                  over conventional computers.",
   acknowledgement = ack-nhfb,
   classification = "723; 921",
   journalabr =   "SIAM Rev",
   keywords =     "computer programming --- Algorithms; dense matrices;
                  linear algebra algorithms; mathematical programming;
                  vector pipeline machine",
}

@BOOK{qv99,
       AUTHOR = "Alfio Quarteroni and Alberto Valli",
       TITLE = "Domain Decomposition Methods for Partial Differential Equations",
       PUBLISHER = "Oxford Science Publications",
       address = "Oxford",
       YEAR = 1999
}

@BOOK{ksv97,
       EDITOR = "David E. Keyes and Ahmed Sameh and V. Venkatakrishnan",
       TITLE = "Parallel Numerical Algorithms",
       PUBLISHER = "Kluwer Academic Publishers",
       address = "the Netherlands",
       YEAR = 1997
}

@BOOK{hackbusch94,
       AUTHOR = "Wolfgang Hackbusch",
       TITLE = "Iterative Solution of Large Sparse Systems of Equations",
       PUBLISHER = "Springer-Verlag",
       address = "New York",
       YEAR = 1994
}

@article{hackbusch1980fast,
  title={Fast solution of elliptic control problems},
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  journal={Journal of Optimization Theory and Applications},
  volume={31},
  number={4},
  pages={565--581},
  year={1980},
  publisher={Springer}
}

@book{hackbusch1985multi,
  title={{Multi-grid methods and applications}},
  author={Hackbusch, W.},
  isbn={3540127615},
  issn={0179-3632},
  year={1985},
  publisher={Springer Verlag}
}

@BOOK{axelsson94,
       AUTHOR = "Owe Axelsson",
       TITLE = "Iterative Solution Methods",
       PUBLISHER = "Cambridge University Press",
       address = "Cambridge",
       YEAR = 1994
}

@BOOK{saad96,
       AUTHOR = "Yousef Saad",
       TITLE = "Iterative Methods for Sparse Linear Systems",
       PUBLISHER = "PWS Publishing Company",
       address = "Boston",
       YEAR = 1996
}
@book(saad2003,
       author="Yousef Saad",
      title={Iterative Methods for Sparse Linear Systems, 2nd edition},
      Publisher="SIAM", address="Philadelpha, PA",
     year="2003"
)

@book{vandervorst03,
   author = "Henk A. {van der Vorst}",
   title = "Iterative Krylov Methods for Large Linear Systems",
   publisher = "Cambridge Monographs on Applied ahd Computational Mathematics",
   year = 2003
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@BOOK{koniges00,
       EDITOR = "Alice E. Koniges",
       TITLE = "Industrial Strength Parallel Computing",
       PUBLISHER = "Morgan Kaufmann Publishers",
       address = "San Francisco",
       YEAR = 2000
}


@Misc{fftw-web-page,
  key = {Fftw},
  title =	 {{FFTW} {Web} page},
  note =	 {\texttt{http://www.fftw.org/}},
  annote =	 {fast FFT.  Parallel versions with MPI and Cilk}
}

@inproceedings{FrigoJohnson93,
  author    = {Matteo Frigo and Steven G. Johnson},
  title     = {The Design and Implementation of {FFTW3}},
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  volume    = {93},
  number    = {2},
  pages     = {216--231},
  year      = {2005}
}

@BOOK{Kelley95,
      AUTHOR="C. T. Kelley",
      TITLE="Iterative Methods for Linear and Nonlinear Equations",
      YEAR="1995",
      PUBLISHER="SIAM",
      address="Philadelphia"
      }

@BOOK{NW99,
      AUTHOR="Jorge Nocedal and Stephen J. Wright",
      TITLE="Numerical Optimization",
      YEAR="1999",
      PUBLISHER="Springer-Verlag",
      address="New York"
      }

@book{szyperski98,
       AUTHOR = "Clemens Szyperski",
       TITLE = "Component Software: Beyond Object-Oriented Programming",
       PUBLISHER = "ACM Press",
       address = "New York",
       YEAR = 1998
}

@article{broy98,
  Author = "Manfred Broy and Anton Deimel and Juergen Henn and Kai Koskimies and
            Franti\v{s}ek Pl\'{a}\v{s}il and Gustave Pomberger and Wolfgang Pree and Michael Stal
            and Clemens Szyperski",
  Title = "What Characterizes a (Software) Component?" ,
  Journal = "Software -- Concepts and Tools",
  Publisher = "Springer-Verlag",
  Year= 1998,
  volume = 19,
  pages = "49-56"
}

@Unpublished{spai-web-page,
  title = 	 "{SPAI} {W}eb {P}age",
  note = 	"http://www.sam.math.ethz.ch/\~{ }grote/spai/",
  author      = "Steven Bernard and Marcus Grote",
  institution = "NASA Ames Research Center and ETH Zurich"
}

@article( gh97,
    Author  = "M. J. Grote and T. Huckle",
    Title   = "Parallel Preconditioning with Sparse Approximate Inverses",
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    Volume  = 18,
    pages   = "838-853"
    )
@article( zhang96,
    Author = "Wen Zhang",
    Title  = "Using {MOL} to Solve a high order nonlinear {PDE} with a moving
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    Journal = "Appl. Numer. Math.",
    Volume = 20,
    pages  = "235-244",
    )

@article( zhang98,
    Author = "Wen Zhang and Ian Gladwell",
    Title  = "The sintering of two particles by surface and grain boundary
         diffusion - a three-dimensional numerical study",
    Journal = "Comp. Mater. Sci.",
    year = 1998,
    volume = 12
    )

@inproceedings{MollerSchwartzbach01,
  AUTHOR = "Anders M\o{}ller and Michael I. Schwartzbach",
  TITLE = "The Pointer Assertion Logic Engine",
  BOOKTITLE = "ACM Proceedings of PLDI'01",
  YEAR = "2001",
}

@inproceedings{KlarlandSchwartzbach97,
  AUTHOR = "Nils Klarland and Michael I. Schwartzbach",
  TITLE = "A Domain-Specific Languages for Regular Sets of Strings and Trees",
  BOOKTITLE = "Proceedings of the Conference on Domain-Specific Languages",
  PUBLISHER = "USENIX",
  MONTH = "October",
  YEAR = "1997",
  ADDRESS = "Santa Barbara, CA",
}

@inproceedings{ConselMarlet98,
  AUTHOR = "C. Consel and R. Marlet",
  TITLE = "Architecturing software using a methodology for language development",
  BOOKTITLE = "Proceedings of the 10th International Symposium on Programming Languages, Implementations, Logics and Programs",
  YEAR = "1998",
  PAGES = "170-174",
  MONTH = "September",
  ADDRESS = "Pisa, Italy",
}

@misc{sundials:homepage,
   author = "C. {Woodward et al.}",
   title = "{SUNDIALS {W}eb page}",
   howpublished  = "\url{https://computation.llnl.gov/casc/sundials/main.html}"
}

@misc{sundials-user-ref,
  title       = "{SUNDIALS}: Suite of Nonlinear and Differential/Algebraic Equation Solvers",
  note        =	"See \url{http://www.llnl.gov/CASC/sundials}",
  author      = "Allan Hindmarsh and Peter Brown and Keith Grant and Steven Lee and Radu Serban and Dan Shumaker and Carol Woodward",
  institution = "Center for Applied Scientific Computing, Lawrence Livermore National Laboratory",
  number = "UCRL-JP-200037",
  year = 2003
}

@article{sundials05,
  author = "A. Hindmarsh and P. Brown and K. Grant and S. Lee and R. Serban and D. Shumaker and C. Woodward",
  title = "{SUNDIALS:} Suite of Nonlinear and Differential/Algebraic Equation Solvers",
  journal = "ACM Transactions on Mathematical Software",
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  pages = "363--396",
  year = 2005
}

@article{pvode99,
  author = "G. Byrne and A. Hindmarsh",
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  number = 4,
  year = 1999,
  pages = "354 -- 365"
}

@article{cvode95,
  author = "S. Cohen and A. Hindmarsh",
  title = "{CVODE}, A Stiff/Nonstiff {ODE} Solver in {C}",
  journal = "Computers in Physics",
  volume = 10,
  number = 2,
  year = 1996,
  pages = "138 -- 143"
}

@techreport{ifpack,
  title       = "Robust Algebraic Preconditioners using {IFPACK} 3.0",
  author      = "Marzio Sala and Michael Heroux",
  institution = "Sandia National Laboratories",
  number      = "SAND2005-0662",
  year = "2005"
}

@techreport{kinsol-user-ref,
  title       = "User Documentation for {KINSOL}, A Nonlinear Solver for Sequential and Parallel Computers",
  author      = "Allan Taylor and Alan Hindmarsh",
  institution = "Center for Applied Scientific Computing, Lawrence Livermore National Laboratory",
  number      = "UCRL-ID-131185",
  year = 1998
}

@article{FiardManteuffelMcCormick98,
  author  = "J.-M. Fiard and T. Manteuffel and S. McCormick",
  title   = "First-order system least squares {(FOSLS)} for convection-diffusion problems: numerical results",
  journal = "SIAM J. Sci. Comp.",
  year    = 1998,
  volume  = 19,
  pages   = {1958--1979}
}

@inproceedings{Vuduc02,
  AUTHOR = "Richard Vuduc and James W. Demmel and Katherine A. Yelick and Shoaib Kamil and Rajesh Nishtala and Benjamin Lee",
  TITLE = "Performance Optimizations and Bounds for Sparse Matrix-Vector Multiply",
  BOOKTITLE = "Proceedings of Supercomputing",
  YEAR = "2002",
  MONTH = "November",
  ADDRESS = "Baltimore"
}

@article{BeckerRannacher01,
  author  = "R. Becker and R. Rannacher",
  title   = "An optimal control approach to a posteriori error estimation in finite element methods",
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  year    = "2001",
  volume  = "10",
  pages   = {1--102}
}

@article{BabuskaMiller84a,
  author  = "I. Babu$\check{s}$ka and A.D. Miller",
  title   = "The post-processing approach in the finite element method, {I}: Calculations of displacements, stresses, and
other higher derivatives of the displacements",
  journal = "Int. J. Numer. Meth. Eng.",
  year    = "1984",
  volume  = "20",
  pages   = {1085--1109}
}

@article{BabuskaMiller84b,
  author  = "I. Babu$\check{s}$ka and A.D. Miller",
  title   = "The post-processing approach in the finite element method, {II}: The calculation of stress intensity
factors",
  journal = "Int. J. Numer. Meth. Eng.",
  year    = "1984",
  volume  = "20",
  pages   = {1111--1129}
}

@article{BabuskaMiller84c,
  author  = "I. Babu$\check{s}$ka and A.D. Miller",
  title   = "The post-processing approach in the finite element method, {III}: A posteriori error estimation and adaptive
mesh refinement",
  journal = "Int. J. Numer. Meth. Eng.",
  year    = "1984",
  volume  = "20",
  pages   = {2311--2324}
}

@unpublished{jtb-web-page,
  title       = "{The Java Tree Builder}",
  note        =	"See \url{http://www.cs.purdue.edu/jtb}",
  author      = "Jens Palsberg",
  institution = "Purdue University"
}

@unpublished{Palsberg98,
  title       = "Why Visitors?",
  note        =	"See \url{http://www.cs.purdue.edu/jtb/whyvisitors}",
  author      = "Jens Palsberg",
  institution = "Purdue University",
  year        = "1998"
}

@unpublished{ply-web-page,
  title       = "{PLY (Python Lex-Yacc)}",
  note        =	"\url{http://systems.cs.chicago.edu/ply}",
  author      = "David Beazley",
  institution = "University of Chicago"
}

@misc{adic-web-page,
  title       = "{ADIC Web page}",
  note        =	"\url{http://www.mcs.anl.gov/autodiff}",
  author      = "Paul Hovland and Uwe Naumann and Boyana Norris",
  institution = "Argonne National Laboratory"
}

@article{Naumann02,
  author  = "Uwe Naumann",
  title   = "Optimal accumulation of {J}acobian matrices by elimination methods on the dual computational graph",
  journal = "Mathematical Programming (to appear)",
  note    = "Preprint ANL/MCS-P944-0402, Argonne National Laboratory, April 2002",
  year    = "2003"
}

@article{kaper1,
  author  = "H. G. Kaper and T. J. Kaper",
  title   = "Asymptotic Analysis of Two Reduction Methods for Systems of Chemical Reactions",
  journal = "Physica D",
  year    = "2002",
  pages   = "66--93",
  volume  = "165"
}

@Misc{ matlab-web-page,
  author =       "",
  title =        "{Matlab Web page}",
  howpublished = "\url{http://www.mathworks.com}",
  key   =        "{Matlab} {Web} page"
}

@misc{ veltisto-web-page,
  author =       "George Biros",
  title =        "{Veltisto Web page}",
  note =         "\url{http://www.cs.nyu.edu/~biros/veltisto}",
}

@article{KarypisKumar98,
  author  = "George Karypis and Vipin Kumar",
  title   = "A Parallel Algorithm for Multilevel Graph Partitioning and Sparse Matrix Ordering",
  journal = "Journal of Parallel and Distributed Computing",
  volume  = "48",
  pages   = "71--85",
  year    = "1998"
}

@techreport{KarypisKumar97,
	Author = {Karypis, George and Kumar, V.},
	Institution = {Department of Computer Science, University of Minnesota},
	Keywords = {graph partitioning; ParMetis},
	Note = {http://www.cs.umn.edu/~metis},
	Number = {97-060},
	Title = {{ParMETIS}: Parallel graph partitioning and sparse matrix ordering library},
	Year = {1997}
}

@misc{ parmetis-web-page,
  author =       "George {Karypis et al.}",
  title =        "{ParMETIS Web page}",
  note =         "\url{http://www.cs.umn.edu/~karypis/metis/parmetis}",
  year = "2005"
}

@misc{ sparskit-web-page,
  author =       "Yousef {Saad et al.}",
  title =        "{SPARSKIT Web page}",
  note =         "\url{http://www.cs.umn.edu/~saad/software/SPARSKIT/sparskit.html}",
}

@misc{ dscpack-web-page,
  author =       "Padma Raghavan",
  title =        "{DSCPACK Web page}",
  note =         "\url{http://www.cse.psu.edu/~raghavan/Dscpack}"
}

@Misc{ gaussian-web-page,
  author =       "",
  title =        "{Gaussian Web page}",
  note =         "\url{http://gaussian.com}",
  key =        "{Gaussian} {Web} page",
}

@Book{lapack-user-guide,
  author = 	 "E. Anderson and Z. Bai and C. Bischof and S. Blackford and J. Demmel and
                  J. Dongarra and J. Du Cris and A. Greenbaum and S. Hammarling and
                  A. McKenney and D. Sorensen",
  title = 	 "LAPACK Users' Guide, Third Edition",
  publisher = 	 "SIAM",
  year = 	 "1999"
}

@Manual{	  nwchem4.1,
  author        = {High Performance Computational Chemistry Group},
  title		= {{NWChem}, A Computational Chemistry Package for Parallel
		  Computers, Version 4.1},
  year		= 2002,
  organization	= {Pacific Northwest National Laboratory},
  address	= {Richland, Washington 99325-0999 USA},
  note          = {See \url{http://www.emsl.pnl.gov/pub/docs/nwchem/}},
}

@Misc{ scidac-web-page,
  author =       "",
  title =        "{{SciDAC Initiative Web page}}",
  note =         "\url{http://www.osti.gov/scidac}",
  key =        "{SciDAC Initiative Web page}"
}

@Misc{cmrs:homepage,
  author =	 {Amitava {Bhattacharjee (PI)}},
  title =	 {{Center for Magnetic Reconnection Studies}},
  howpublished = {\url{http://www.physics.uiowa.edu/cmrs}}
}

@Misc{tops:homepage,
  author =	 {David {Keyes (PI)}},
  title =	 {{Towards Optimal Petascale Simulations (TOPS) Center}},
  howpublished = {\url{http://scalablesolvers.org}}
}

@Misc{tstt:homepage,
  author =	 {David Brown and Jim Glimm and Lori Freitag},
  title =	 {{Terascale Simulation Tools and Technology (TSTT) Center}},
  howpublished = {\url{http://www.tstt-scidac.org}},
  year = {2005}
}

@Misc{petsc:applications,
  author =	 {B. {Smith et al.}},
  title =	 {{Scientific Applications Using {PETSc}}},
  howpublished = {\url{http://www.mcs.anl.gov/petsc/publications}}
}

@Misc{petsc:users,
  author =	 {B. {Smith et al.}},
  title =	 {{PETSc User Statistics}},
  howpublished = {\url{http://www.mcs.anl.gov/petsc/miscellaneous/usage.html}}
}

@Misc{cemm:homepage,
  author =	 {Steve {Jardin (PI)}},
  title =	 {{Center for Extended MHD Modeling}},
  howpublished = {\url{http://w3.pppl.gov/CEMM}}
}

@Misc{m3d:homepage,
  author =	 {Steve {Jardin et al.}},
  title =	 {{M3D Web page}},
  howpublished = {\url{http://w3.pppl.gov/m3d}}
}

@Misc{nimrod:homepage,
  author =	 {Carl R. {Sovinec et al.}},
  title =	 {{NIMROD Web page}},
  howpublished = {http://nimrodteam.org}
}

@misc{grace-web-page,
   author = "Manish {Parashar et al.}",
   title = "{GrACE Web Page}",
   howpublished  = "\url{http://www.caip.rutgers.edu/~parashar/TASSL/Projects/GrACE}",
}

@misc{accel1,
   title = "Advanced Computing for 21st Century Accelerator Science and Technology Web page",
   howpublished  = "\url{http://scidac.nersc.gov/accelerator/}",
   author = "K. Ko and R. Ryne (PIs)"
}

@unpublished{KatzSpiegelman03,
  author  = "Richard F. Katz and Marc Spiegelman",
  title   = "A semi-{L}agrangian {C}rank-{N}icholson algorithm for the numerical solution of advection-diffusion problems",
  note    = "Columbia University, in preparation",
}

@misc{acts:homepage,
   author = "",
   title = "{Advanced CompuTational Software (ACTS) Web page}",
   howpublished  = "\url{http://acts.nersc.gov}",
   key = "{Advanced CompuTational Software (ACTS) Web page}",
}

@misc{superlu:homepage,
   author = "J. Demmel and J. Gilbert and X. Li",
   title = "{SuperLU Web page}",
   howpublished  = "http://crd.lbl.gov/\~xiaoye/SuperLU"
}

@inproceedings{ccf98,
 author=     "E. Chow and A. Cleary and R. Falgout",
 title=      "Design of the hypre Preconditioner Library",
 booktitle = "Proceedings of the SIAM Workshop on Object Oriented Methods for
              Inter-operable Scientific and Engineering Computing",
 publisher = "SIAM",
 year=       1999,
}


@TechReport{hypre-users-manual,
  author      = "R. Falgout",
  title       = "{hypre} Users Manual",
  number      = "Revision 2.0.0",
  institution = "Lawrence Livermore National Laboratory",
  year        = 2006
}


@misc{hypre:homepage,
   author = "R. Falgout",
   title = "{hypre Web page}",
   howpublished  = "\url{http://www.llnl.gov/CASC/hypre}"
}

@InProceedings{trilinos:gpu,
  author =	 {C.G. Baker and  M.A. Heroux. and H.C. Edwards and  A.B. Williams},
  title =	 {A Light-weight API for Portable Multicore Programming},
  booktitle =	 {18th Euromicro International Conference on Parallel, Distributed and Network-Based Processing (PDP)},
  pages =	 {601--606},
  publisher =	 {IEEE},
  year =	 {2010}
}

@misc{trilinos:homepage,
   author = "M. {Heroux et al.}",
   title = "{Trilinos Web page}",
   howpublished  = "{\tt http://trilinos.sandia.gov/}"
}

@article{trilinos:overview,
author = {Michael A. Heroux and Roscoe A. Bartlett and Vicki E. Howle and Robert J. Hoekstra and Jonathan J. Hu and Tamara G. Kolda and Richard B. Lehoucq and Kevin R. Long
          and Roger P. Pawlowski and Eric T. Phipps and Andrew G. Salinger and Heidi K. Thornquist and Ray S. Tuminaro and James M. Willenbring and Alan Williams and Kendall S. Stanley},
title = {An overview of the {T}rilinos project},
journal = {ACM Trans. Math. Softw.},
volume = {31},
number = {3},
year = {2005},
issn = {0098-3500},
pages = {397--423},
doi = {http://doi.acm.org/10.1145/1089014.1089021},
publisher = {ACM Press}
}

@misc{rythmos:homepage,
  author = "T. Coffey and R. Bartlett",
  title = "Rythmos: Transient Integration of Differential Equations",
  howpublished = "\url{http://trilinos.sandia.gov/packages/rythmos}"
}

@misc{triangle:homepage,
   author = "J. {Shewchuk}",
   title = "{Triangle: A Two-Dimensional Quality Mesh Generator and Delaunay Triangulator}",
   howpublished  = "\url{http://www-2.cs.cmu.edu/~quake/triangle.html}",
   year = "2005"
}

@misc{tetgen:homepage,
   author = "Hang {Si}",
   title = "{TetGen: A Quality Tetrahedral Mesh Generator and Three-Dimensional Delaunay Triangulator}",
   howpublished  = "\url{http://tetgen.berlios.de}",
   year = "2005"
}

@misc{thrust,
   author = "N. Bell and J. Hoberock",
   title = {The {T}hrust Library},
   howpublished  = "{\tt http://code.google.com/p/thrust/}",
   year = "2010"
}

@misc{cusp,
   author = "N. Bell and M. Garland",
   title = {The {C}usp Library},
   howpublished  = "{\tt http://code.google.com/p/cusp-library/}",
   year = "2010"
}

@misc{CIG:homepage,
   author = "M. {Gurnis et al.}",
   title = "{Computational Infrastructure for Geodynamics}",
   howpublished  = "\url{http://www.geodynamics.org}"
}

@article{MaltsevSelkov00,
  author  = "R. Overbeek and N. Larsen and G. Pusch and M. D'Souza and E. Selkov Jr. and N. Kyrpides and M. Fonstein and N. Maltsev and E. Selkov",
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  month   = "January",
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  volume  = "28",
  number  = "1",
}

@article{more:coloring,
  author  = "Thomas F. Coleman and Jorge J. More",
  title   = "Estimation of Sparse {J}acobian Matrices and Graph Coloring Problems",
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@article{SelkovMaltsev97,
  author  = "E. Selkov and N. Maltsev and G.J. Olsen and R. Overbeek and W. B. Whitman",
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  journal = "Gene",
  year    = "1997",
  pages   = "GC11-GC26",
  volume  = "197",
  number  = "1-2",
}

@unpublished{rocketcenter,
  title       = "Center for Simulation of Advanced Rockets",
  note        =	"http://www.csar.uiuc.edu",
  institution = "University of Illinois at Urbana-Champaign"
}

@unpublished{Kirby03,
  title       = "A posteriori error estimates for the mixed hybrid finite element method",
  note        =	"\url{http://www.ices.utexas.edu/~clint/nsf/apostmfem.ps}",
  author      = "Ricahrd Kirby",
  institution = "University of Chicago"
}

@article{BarthLarson00,
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  title   = "{\em A posteriori} Error Estimation for Discontiuous {G}alerkin Approximations of Hyperbolic Systems",
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  volume  = "11",
  publisher = "Spinger-Verlag",
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@Article{xu1,
  author    = "J. Xu",
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  journal =   "SIAM Review",
  volume = "34",
  pages = "581--613",
  year      = 1992
}

@Article{Brandt77,
  author  = "Achi Brandt",
  title   = "Multi-Level Adaptive Solutions to Boundary-Value Problems",
  journal = "Mathematics of Computation",
  month   = "April",
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  volume  = "31",
  number  = "138",
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@Article{amge1,
  author    = "M. Brezina and A. J. Cleary and R. D. Falgout and V. E. Henson and J. E. Jones and T. A. Manteuffel and
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@Unpublished{ mtwm03,
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@book{Joseph02,
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@article{MUMPS01,
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@article{Zoltan06,
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@article{lidemmel03,
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@techreport{Trilinos-Overview03,
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@techreport{Trilinos-Users-Guide,
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@unpublished{compass:homepage,
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% -----------------------------------------------------------------------
% Model coupling refs

http://csdrm.caltech.edu/

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@article{he05,
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@inproceedings{toth04,
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@Misc{csdrm:web,
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@Misc{csar:web,
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@Misc{csafe:web,
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@Misc{cits:web,
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@Misc{flash:web,
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@INPROCEEDINGS{cactus02,
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@misc{cactus:homepage,
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@techreport{drashansky96,
  title = "Multidisciplinary Problem Solving using Agents in a Cluster Environment",
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  year = 1996
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@article{michopoulos05,
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@article{dubey09,
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@Book{BottLoring95,
  AUTHOR    = "Raoul Bott and Loring W. Tu",
  TITLE	    = "Differential Forms in Algebraic Topology",
  PUBLISHER = "Springer",
  YEAR	    = "1995"
}

@Book{KobayashiNomizu96,
  AUTHOR    = "Shoshichi Kobayashi and Katsumi Nomizu",
  TITLE	    = "Foundations of Differential Geometry",
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  YEAR	    = "1996"
}

@Article{HornungKohn02,
  author  = {Richard D. Hornung and Scott R. Kohn},
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  volume  = 14,
  pages   = {347--368},
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@inproceedings{concepts06,
  author    = "Douglas Gregor and Jaakko J{\"a}rvi and Jeremy Siek and Bjarne Stroustrup and Gabriel Dos Reis and Andrew Lumsdaine",
  title     = "Concepts: Linguistic Support for Generic Programming in C++",
  booktitle = "Proceedings of OOPSLA 2006",
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@BOOK{Hatcher02,
  AUTHOR = {Hatcher, Allen},
  TITLE = {Algebraic Topology},
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  YEAR = 2002
}

@book{GammaHelmJohnsonVlissides95,
	abstract = {{Design Patterns is a modern classic in the literature of object-oriented development, offering timeless and elegant solutions to common problems in software design. It describes patterns for managing object creation, composing objects into larger structures, and coordinating control flow between objects. The book provides numerous examples where using composition rather than inheritance can improve the reusability and flexibility of code. Note, though, that it's not a tutorial but a catalog that you can use to find an object-oriented design pattern that's appropriate for the needs of your particular application--a selection for virtuoso programmers who appreciate (or require) consistent, well-engineered object-oriented designs.} {Now on CD, this internationally acclaimed bestseller is more valuable than ever!

Use the contents of the CD to create your own design documents and reusable components. The CD contains: 23 patterns you can cut and paste into your own design documents; sample code demonstrating pattern implementation; complete Design Patterns content in standard HTML format, with numerous hyperlinked cross-references; accessed through a standard web browser; Java-based dynamic search mechanism, enhancing online seach capabilities; graphical user environment, allowing ease of navigation.

First published in 1995, this landmark work on object-oriented software design presents a catalog of simple and succinct solutions to common design problems. Created by four experienced designers, the 23 patterns contained herein have become an essential resource for anyone developing reusable object-oriented software. In response to reader demand, the complete text and pattern catalog are now available on CD-ROM. This electronic version of Design Patterns enables programmers to install the book directly onto a computer or network for use as an online reference for creating reusable object-oriented software.

The authors first describe what patterns are and how they can help you in the design process. They then systematically name, explain, evaluate, and catalog recurring designs in object-oriented systems. All patterns are compiled from real-world examples and include code that demonstrates how they may be implemented in object-oriented programming languages such as C++ and Smalltalk. Readers who already own the book will want the CD to take advantage of its dynamic search mechanism and ready-to-install patterns.}},
  author = {Gamma, Erich and Helm, Richard and Johnson, Ralph and Vlissides, John},
  citeulike-article-id = {115158},
  howpublished = {Hardcover},
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  keywords = {1995 algorithms architecture book books computer computing design design-pattern design-patterns design_patterns designpatterns development diplom entwurfsmuster four gang gof java mathgamespatterns no-tag object object-orientation object-oriented of oo-patterns oop oriented pattern patterns programming se software software-development software-engineering software_design softwareengineering standard},
  month = {January},
  publisher = {{Addison-Wesley Professional}},
  title = {Design Patterns},
  url = {http://www.amazon.ca/exec/obidos/redirect?tag=citeulike04-20{\&}path=ASIN/0201633612},
  year = {1995}
}

@inproceedings{Chaco95,
 author = {Bruce Hendrickson and Robert Leland},
 title = {A multilevel algorithm for partitioning graphs},
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 year = {1995},
 isbn = {0-89791-816-9},
 pages = {28},
 location = {San Diego, California, United States},
 doi = {http://doi.acm.org/10.1145/224170.224228},
 publisher = {ACM Press},
 address = {New York},
}

@BOOK{Aleksandrov98,
  AUTHOR = {Aleksandrov, Pavel S.},
  TITLE = {Combinatorial Topology},
  PUBLISHER = {Dover},
  VOLUME = 3,
  YEAR = 1998
}

@book{Steenrod99,
	abstract = {{
Fibre bundles, now an integral part of differential geometry, are also of great importance in modern physics--such as in gauge theory. This book, a succinct introduction to the subject by renown mathematician Norman Steenrod, was the first to present the subject systematically.

It begins with a general introduction to bundles, including such topics as differentiable manifolds and covering spaces. The author then provides brief surveys of advanced topics, such as homotopy theory and cohomology theory, before using them to study further properties of fibre bundles. The result is a classic and timeless work of great utility that will appeal to serious mathematicians and theoretical physicists alike.
}},
	author = {Steenrod, Norman},
	citeulike-article-id = {712999},
	howpublished = {Paperback},
	isbn = {0691005486},
	keywords = {fibre_bundles topology},
	month = {April},
	publisher = {{Princeton University Press}},
	title = {The Topology of Fibre Bundles. (PMS-14)},
	url = {http://www.amazon.ca/exec/obidos/redirect?tag=citeulike04-20{\&}path=ASIN/0691005486},
	year = {1999}
}

@BOOK{Bredon97,
  AUTHOR = {Bredon, Glen E.},
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  PUBLISHER = {Springer},
  PAGES = {524},
  SERIES = {Graduate Texts in Mathematics},
  YEAR = 1997
}

@techreport{TautgesMeyers04,
  title       = "{MOAB}: A Mesh-Oriented Database",
  author      = "Timothy J. Tautges and Ray Meyers and Karl Merkley and Clint Stimpson and Corey Ernst",
  institution = "Sandia National Laboratories",
  number      = "SAND2004-1592",
  month       = "April",
  year        = "2004"
}

@article{Tautges04,
  author  = {Timothy J. Tautges},
  title   = {{MOAB}-{SD}: Integrated Structured and Unstructured Mesh Representation},
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  pages   = {286--293},
  year    = {2004}
}

@inproceedings{Meyers02,
  author    = {Ray Meyers et. al},
  title     = {{SNL} Implementation of the {TSTT} Mesh Interface},
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  year      = {2002}
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@inproceedings{SeolShepard05,
  author    = {E. S. Seol and Mark S. Shephard},
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  year      = {2005},
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@article{BeallWalshShephard04,
  author  = {Mark W. Beall and Joe Walsh and Mark S. Shephard},
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  year    = {2004}
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@article{CareyAndersonCarnesKirk04,
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  volume  = {166},
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  year    = {2004}
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@PHDTHESIS{GrALThesis,
  author = "Guntram Berti",
  title  = "Generic Software Components for Scientific Computing",
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  year   = "2000",
  note   = "\url{http://www.math.tu-cottbus.de/~berti/diss}"
}

@article{BeylkinCoifmanRokhlin91,
  author  = {Gregory Beylkin and Ronald Coifman and Vladimir Rokhlin},
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@book{Wesseling92,
  author    = {Pieter Wesseling},
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@book{Grakakos04,
  author    = {Loukas Grakakos},
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  year      = {2004},
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@Misc{hlib-web-page,
  key    = {HLib},
  title  = {{HLib} {Web} page},
  note   = {{\texttt{http://www.hlib.org/}}},
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}

@article{Hackbusch99,
  author  = {Wolfgang Hackbusch},
  title   = {A sparse matrix arithmetic based on {$\mathcal H$}-matrices. Part {I}: Introduction to {$\mathcal H$}-matrices},
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@techreport{kay1999green,
  title={A {G}reen's function preconditioner for the steady-state {N}avier-{S}tokes equations},
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  institution={Oxford University Computing Laboratory},
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@article{bebendorf2003existence,
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@article{hackbusch2005direct,
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@techreport{DupHof2003,
  author      = {T. Dupont and J. Hoffman and C. Johnson and R. C. Kirby and M. G. Larson and A. Logg and L. R. Scott},
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  number      = {2003--21},
  year        = {2003}
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@article{FLAME01,
  author  = {John A. Gunnels and Fred G. Gustavson and Greg M. Henry and Robert A. van de Geijn},
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  volume  = {27},
  number  = {4},
  year    = {2001},
  pages   = {422--455}
}

@article{Puschel05,
  author  = {Markus P{\"u}schel and Jos{\'e} M. F. Moura and Jeremy Johnson and
    David Padua and Manuela Veloso and Bryan W. Singer and Jianxin Xiong and
    Franz Franchetti and Aca Ga\v{c}i\'{c} and Yevgen Voronenko and Kang Chen
    and Robert W. Johnson and Nick Rizzolo},
  title   = {{SPIRAL}: Code Generation for {DSP} Transforms},
  journal = {Proceedings of the IEEE},
  volume  = {93},
  number  = {2},
  year    = {2005},
  note    = {special issue on "Program Generation, Optimization, and Adaptation"}
}

@article{KirbyLogg06,
  author    = {Robert C. Kirby and Anders Logg},
  title     = {A compiler for variational forms},
  journal   = {ACM Transactions on Mathematical Software},
  volume    = {32},
  number    = {3},
  year      = {2006},
  issn      = {0098-3500},
  pages     = {417--444},
  doi       = {http://doi.acm.org/10.1145/1163641.1163644},
  publisher = {ACM Press},
  address   = {New York, NY, USA},
}

@article{KirbyLogg07,
  author    = {Robert C. Kirby and Anders Logg},
  title     = {Efficient compilation of a class of variational forms},
  journal   = {ACM Transactions on Mathematical Software},
  volume    = {33},
  number    = {3},
  year      = {2007},
  issn      = {0098-3500},
  pages     = {17},
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  publisher = {ACM Press},
  address   = {New York, NY, USA},
}

@article{BankDupont81,
  author  = {Randolph Bank and Todd Dupont},
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@techreport{Adams00,
  author      = {Mark F. Adams},
  title       = {Evaluation of three unstructured multigrid methods on 3D finite element problems in solid mechanics},
  institution = {UC Berkeley},
  number      = {CSD-00-1103},
  year        = {2000},
  url         = {citeseer.ist.psu.edu/article/adams00evaluation.html}
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@article{BergenGradlHuelsemannRuede06,
  author  = {Benjamin Bergen and Tobias Gradl and Frank H\"ulsemann and Ulrich R\"ude},
  title   = {A Massively Parallel Multigrid Method for Finite Elements},
  journal = {Computing in Science \& Engineering},
  volume  = {8},
  number  = {6},
  pages   = {56--62},
  year    = {2006}
}

@MastersThesis{BruneThesis08,
    author  = {Peter Brune},
    title   = {Enabling Unstructured Multigrid Under the Sieve Framework},
    school  = {University of Chicago},
    address = {Chicago, IL},
    year    = {2008},
    month   = {February}
}

@article{ArnoldWinther02,
  author  = {Douglas N. Arnold and Ragnar Winther},
  title   = {Mixed finite elements for elasticity},
  journal = {Numerische Mathematik},
  volume  = {92},
  number  = {3},
  month   = {September},
  year    = {2002},
  pages   = {401--419},
  note    = {DOI:10.1007/s002110100348}
}

@article{ArnoldFalkWinther06,
  author    = {Douglas N. Arnold and Richard S. Falk and Ragnar Winther},
  title     = {Finite element exterior calculus, homological techniques, and applications},
  journal   = {Acta Numerica},
  year      = {2006},
  volume    = {15},
  pages     = {1--155},
  publisher = {Cambridge University Press},
  note      = {doi:10.1017/S0962492906210018}
}

@article{Kirby04,
  author    = {Robert C. Kirby},
  title     = {Algorithm 839: {FIAT}, a new paradigm for computing finite element basis functions},
  journal   = {ACM Transactions on Mathematical Software},
  volume    = {30},
  number    = {4},
  year      = {2004},
  issn      = {0098-3500},
  pages     = {502--516},
  doi       = {http://doi.acm.org/10.1145/1039813.1039820},
  publisher = {ACM Press},
  address   = {New York, NY, USA},
}

@article{Kirby06,
  author    = {Robert C. Kirby},
  title     = {Optimizing {FIAT} with level 3 {BLAS}},
  journal   = {ACM Transactions on Mathematical Software},
  volume    = {32},
  number    = {2},
  year      = {2006},
  issn      = {0098-3500},
  pages     = {223--235},
  doi       = {http://doi.acm.org/10.1145/1141885.1141889},
  publisher = {ACM Press},
  address   = {New York, NY, USA},
}

@misc{BlueCrystal08,
  author = {{B}lue {C}rystal Cluster},
  title  = {Advanced {C}omputing {R}esearch {C}entre{,} {University of Bristol}},
  year   = {2008},
  note   = {\url{http://www.acrc.bris.ac.uk/acrc/hpc.htm}}
}

@article{Beylkin95,
  author  = {Gregory Beylkin},
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  pages   = {363--381},
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@inproceedings{Riehl08,
  author    = {Jonathan Riehl},
  title     = {Implementing the MyFEM Embedded Domain-specific Language},
  booktitle = {Proceedings of the Second International Workshop on Domain-specific Program Development (DSPD'08)},
  address   = {Nashville, TN},
  year      = {2008},
}

@article{Appel85,
	Author = {Andrew W. Appel},
	Date-Added = {2008-02-27 12:23:39 +0000},
	Date-Modified = {2008-02-27 12:24:02 +0000},
	Doi = {10.1137/0906008},
	Journal = {SIAM Journal on Scientific and Statistical Computing},
	Keywords = {treecodes},
	Number = {1},
	Pages = {85-103},
	Publisher = {SIAM},
	Title = {An Efficient Program for Many-Body Simulation},
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@misc{BursteddeWilcox09,
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@book{Joseph90,
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@inproceedings{BynaSunGroppThakur04,
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@book{Pozrikidis07,
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@misc{KritzKeyesFSP07,
author= "A. Kritz and D. Keyes",
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@misc{Dahlburg02,
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@misc{Brown08,
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@misc{Crosscutting10,
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@misc{extreme-scale-solvers-workshop12,
author= "J. Ang and K. Evans and A. Geist and M. Heroux and P. Hovland and O. Marques and L.C. McInnes and E. Ng and S. Wild",
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@misc{MonizRosner09,
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@misc{Blanford08,
author= "{R. Blandord (Chair)}",
title=  "{Workshop on Challenges for Understanding the Quantum Universe and the Role of Computing at the Extreme Scale}",
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@misc{Exascale07,
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@misc{ASCRBreakthroughs08,
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@misc{petsc-RD100-2009,
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@article{compass-scidac08,
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@article{compass-amundson-scidac08,
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@inproceedings{muszala09,
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@article{gaston09,
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@article{gaston09b,
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@article{newman09,
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@misc{www:fenics,
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@inproceedings{zwart08,
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@article{KlocknerWarburtonBridgeHesthaven09,
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@phdthesis{Rankin99,
	Author = {Rankin, W. T.},
	Keywords = {FMM, parallel FMM},
	School = {Department of Electrical and Computer Engineering, Duke University},
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	Year = {1999}
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@inproceedings{WarrenSalmon93,
	Abstract = {We report on an efficient adaptive N-body method which we have recently designed and implemented. The algorithm computes the forces on an arbitrary distribution of bodies in a time which scales as N log N with the particle number. The accuracy of the force calculations is analytically bounded, and can be adjusted via a user defined parameter between a few percent relative accuracy, down to machine arithmetic accuracy. Instead of using pointers to indicate the topology of the tree, we identify...},
	Address = {New York},
	Author = {Warren, Michael S. and Salmon, John K.},
	Booktitle = {Proceedings of the 1993 ACM/IEEE Conference on Supercomputing},
	Citeulike-Article-Id = {580952},
	Keywords = {oct-tree},
	Pages = {12--21},
	Publisher = {ACM},
	Title = {A parallel hashed Oct-Tree {N}-body algorithm},
	Year = {1993},
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@unpublished{CruzWCCM10,
  author = {Felipe A. Cruz},
  title  = {Heterogeneous extension of the PetFMM a Fast Multipole Library},
  note   = {Presentation at WCCM 2010, Sydney Australia},
  year   = {2010}
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@article{McGuffee06,
  author  = {S.~R. {McGuffee} and A.~H. Elcock},
  title   = {Atomistically detailed simulations of concentrated protein solutions: the effects of salt, {pH}, point mutations, and protein concentration in simulations of 1000-molecule systems},
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@ARTICLE{NilsenCaiHoylandLangtangen10,
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    title = "{Simplifying Parallelization of Scientific Codes by a Function-Centric Approach in Python}",
  journal = {ArXiv e-prints},
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   eprint = {1002.0705},
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 keywords = {Computer Science - Distributed, Parallel, and Cluster Computing, Computer Science - Programming Languages},
     year = 2010,
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@misc{mcinnes:siam09:minisymposium,
  title = "Implicit Nonlinear Solvers in Multimodel Simulations",
  author = "L. C. McInnes and C. {Woodward (co-organizers)}",
  note = "invited minisymposium session at the SIAM Annual Meeting, July 9-10, 2009, Denver, CO,
speakers were: C. Woodward (LLNL), E. Myra (Univ. of Michigan), J. White (Stanford Univ.), A. Barker (Univ. of Colorado, Boulder), L. Wilcox (Univ. of Texas at Austin), R. Mills (ORNL), B. Smith (ANL), J. Shadid (SNL), D. Knoll (INL), G. Hansen (INL), J. Cary (Tech-X Corp.), T. Wildey (Univ. of Texas at Austin)."
}

@misc{mcinnes:fsp-summary:feb2011,
 author = "Lois Curfman McInnes and Luis Chacon and John Shadid",
 title = "Solvers and Time Integration Breakout Summary",
 note = "FSP Planning Workshop, General Atomics, Feb 8-11, 2011,
       see \url{https://ice.txcorp.com/trac/2011_FspDefinitionWorkshop}"
}

@misc{dvi-materials:siamcse11,
   title = "Progress in Large-Scale Differential Variational Inequalities for Heterogeneous Materials",
   author = "M. Anitescu and A. El-Azab and J. Lee and L. C. McInnes and T. Munson and B. Smith and L. Wang",
   note = "minisymposium presentation at the 2011 SIAM Conference on Computational Science and Engineering, March 3, 2011",
}

@misc{jamroz:cemm10,
   title = "{JFNK} within the semi-implicit scheme in {NIMROD}",
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   note = "presentation, CEMM Meeting, Chicago, IL, Nov 7, 2010",
}

@misc{kruger:feb4-2011,
   title = "personal communication",
   author = "S. Kruger",
   note = "February, 2011"
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@article{Elman1996,
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@article{KayLoghinWathen2002,
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@article{ElmanHowleShadidShuttleworthTuminaro2006,
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@article{BraessSarazin1997,
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@article{wright2001large,
  title={Large-Scale Computation of Pseudospectra Using {ARPACK} and \texttt{eigs}},
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@misc{wright2002eigtool,
  title={Eig{T}ool},
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@misc{visit-web-site,
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@book{trefethen2005spectra,
  title={Spectra and pseudospectra: the behavior of nonnormal matrices and operators},
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@article{gomez2010isogeometric,
  title={Isogeometric analysis of the isothermal {N}avier-{S}tokes-{K}orteweg equations},
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@article{gomez2008isogeometric,
  title={Isogeometric analysis of the {C}ahn-{H}illiard phase-field model},
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@Misc{fastmath:project,
  author = {Lori {Diachin (PI)}},
  title  = {{SciDAC-3 Frameworks, Algorithms, and Scalable Technologies for Mathematics (FASTMath) Institute}},
  howpublished = {\url{http://www.fastmath-scidac.org/}}
}

@Misc{exascale-software:proposal,
  author = {Peter {Beckman (PI)}},
  title  = {{Exascale Software Center}},
  note   = {proposal to DOE}
}

@Misc{imex:project,
  author = {Barry {Smith (PI)}},
  title  = {{Scalable Implicit-Explicit (IMEX) Algorithms and Software for Time-Dependent Multimodel PDEs}},
  note   = {DOE ASCR applied math project}
}

@Misc{intel-mic:website,
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}

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author    =  {B.D. Dudson and M.V. Umansky and X.Q. Xu and P.B. Snyder and
              H.R. Wilson},
title     = {{{BOUT++:}} a framework for parallel plasma fluid simulations},
journal   = {Computer Physics Communications},
volume    = 180,
pages     = 1467,
year      = 2009}

@Article{umansky:2009,
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@article{StubenAMG,
 author = {K. St\"{u}ben},
 title = {A review of algebraic multigrid},
 journal = {J. Comput. Appl. Math.},
 volume = {128},
 number = {1-2},
 year = {2001},
 issn = {0377-0427},
 pages = {281--309},
 doi = {http://dx.doi.org/10.1016/S0377-0427(00)00516-1},
 publisher = {Elsevier Science Publishers B. V.},
 address = {Amsterdam, The Netherlands, The Netherlands},
 }

@article{FeuchterMG,
author = "D. Feuchter and I. Heppner and S. Sauter and G. Wittum",
title = "Bridging the gap between geometric and algebraic multigrid methods",
journal = "Computing and visualization in science",
publisher = "Springer",
volume = "6",
number = "1",
year = "2003",
pages = "1--13",
}

@article{ChowMGSmoothness,
    abstract = {For non-M-matrices, this paper proposes an unstructured multigrid method that only  attempts to interpolate in the directions of geometrical smoothness. These directions are  determined by analyzing samples of algebraically smooth error, e. Neighboring grid points i  and j are called smoothly coupled if e i and e j are consistently nearby in value. In addition,  these dierences may be used to dene interpolation weights. These new ideas may be  incorporated into the algebraic multigrid method. Test results show that the new method  can have much lower grid and operator complexities compared to AMG, leading to lower  solve timings.  1 },
    author = {Chow, Edmond},
    citeulike-article-id = {7675372},
    citeulike-linkout-0 = {http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.22.4305},
    journal = {American Journal of Mathematics},
    keywords = {fem, multigrid},
    pages = {197--215},
    posted-at = {2010-08-17 23:29:51},
    priority = {2},
    title = {An Unstructured Multigrid Method Based on Geometric Smoothness},
    url = {http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.22.4305},
    volume = {65},
    year = {2001}
}

@article{JonesAMGe,
    abstract = {{This paper contains the main ideas for an AMGe (algebraic multigrid for finite elements) method based on element agglomeration. In the method, coarse grid elements are formed by agglomerating fine grid elements. Compatible interpolation operators are constructed which yield coarse grid basis functions with a minimal energy property. Heuristics based on interpolation quality measures are used to guide the agglomeration procedure. The performance of the resulting method is demonstrated in two-level numerical experiments.}},
    author = {Jones, Jim E. and Vassilevski, Panayot S.},
    citeulike-article-id = {8598569},
    citeulike-linkout-0 = {http://scitation.aip.org/getabs/servlet/GetabsServlet?prog=normal&id=SJOCE3000023000001000109000001&idtype=cvips&gifs=yes},
    citeulike-linkout-1 = {http://link.aip.org/link/?SCE/23/109},
    journal = {SIAM Journal on Scientific Computing},
    keywords = {amg, fem, multigrid},
    number = {1},
    pages = {109--133},
    posted-at = {2011-01-13 18:05:55},
    priority = {2},
    publisher = {SIAM},
    title = {{AMGE Based on Element Agglomeration}},
    url = {http://scitation.aip.org/getabs/servlet/GetabsServlet?prog=normal&id=SJOCE3000023000001000109000001&idtype=cvips&gifs=yes},
    volume = {23},
    year = {2001}
}

@article{Saad1993,
author = {Saad, Youcef},
doi = {10.1137/0914028},
issn = {10648275},
journal = {SIAM Journal on Scientific Computing},
keywords = {65f10,ams,especially since the popularization,gate gradient,general purpose iterative methods,gmres,krylov subspace methods,mos,non-hermitian systems,of precondition-,preconditioned conju-,subject classi cations,variable preconditioners},
number = {2},
pages = {461--469},
title = {{A flexible inner-outer preconditioned GMRES algorithm}},
url = {http://dx.doi.org/10.1137/0914028},
volume = {14},
year = {1993}
}

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@InBook{McInnesAllanEtAl06,
  author =       {Lois Curfman McInnes and Benjamin Allan and Robert Armstrong and Steven Benson and
                  David Bernholdt and Tamara Dahlgren and Lori Diachin and Manojkumar Krishnan and
                  James Kohl and Jay Larson and Sophia Lefantzi and Jarek Nieplocha and Boyana Norris and
                  Steven Parker and Jaideep Ray and Shujia Zhou},
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@article{CyrShadidTuminaro12,
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@article{KeyesMcInnesWoodwardEtAl13,
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 author   = {David E. Keyes and Lois Curfman McInnes and Carol Woodward and
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             Tobin Isaac and Xiangmin Jiao and Kirk Jordan and Dinesh Kaushik and 
             Efthimios Kaxiras and Alice Koniges and Kihwan Lee and Aaron Lott and 
             Qiming Lu and John Magerlein and Reed Maxwell and Michael McCourt and 
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 note     = {Special issue},
 abstract = {We consider multiphysics applications from algorithmic and
architectural perspectives, where ``algorithmic'' includes both
mathematical analysis and computational complexity and
``architectural'' includes both software and hardware environments.
Many diverse multiphysics applications can be reduced, en route to
their computational simulation, to a common algebraic coupling
paradigm. Mathematical analysis of multiphysics coupling in this form
is not always practical for realistic applications, but model problems
representative of applications discussed herein can provide insight.
A variety of software frameworks for multiphysics applications have
been constructed and refined within disciplinary communities and
executed on leading-edge computer systems.  We examine several of
these, expose some commonalities among them, and attempt to
extrapolate best practices to future systems. From our study, we
summarize challenges and forecast opportunities.}
}

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  keywords = "Adaptivity",
  keywords = "Preconditioning",
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@TechReport{ml-guide,
  author      =  {M.W. Gee and C.M. Siefert and J.J. Hu and R.S. Tuminaro and M.G. Sala},
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  year        =  {2006},
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@article{Dorit2011,
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volume    = {9},
number    = {1},
year      = {2011},
pages     = {407-423},
ee        = {http://dx.doi.org/10.1137/100791142}
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@misc{sharpclaw,
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file = {:Users/ketch/Documents/Mendeley Desktop/Nilsen et al/2010 - Simplifying the parallelization of scientific codes by a function-centric approach in Python.pdf:pdf},
journal = {Computational Science \& Discovery},
keywords = {parallel,programming,python,software},
mendeley-tags = {parallel,programming,python,software},
pages = {015003},
publisher = {IOP Publishing},
title = {{Simplifying the parallelization of scientific codes by a function-centric approach in Python}},
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@book{Langtangen09,
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@book{NumpyGuide,
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@misc{PyCUDA,
   author       = {Andreas Kl\"ockner},
   title        = {{PyCUDA}},
   howpublished = {\url{http://mathema.tician.de/software/pycuda}},
   year         = {2011}
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@misc{PyOpenCL,
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   year         = {2011}
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@article{Klockner2012,
  author  = {Andreas Kl\"{o}ckner and Nicolas Pinto and Yunsup Lee and Bryan Catanzaro and Paul Ivanov and Ahmed Fasih},
  title   = {{PyCUDA} and {PyOpenCL}: A scripting-based approach to {GPU} run-time code generation},
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%%%%%% Matt Stuff %%%%%%
@misc{knepley:icerm-workshop:2012,
 author = {David Keyes and Matthew Knepley and Katherine Yelick},
 title  = {Synchronization-reducing and Communication-reducing Algorithms and Programming Models for Large-scale Simulations},
 note   = {Workshop sponsored by the Institute for Computational and Experimental Research in Mathematics (ICERM), Jan. 9-13, 2012, Providence, RI, \url{http://icerm.brown.edu/tw12-1-exascale}},
 year   = {2012}
}

@techreport{KirbyKnepleyScott04,
  author      = {Robert C. Kirby and Matthew G. Knepley and L. Ridgway Scott},
  title       = {Optimal Evaluation of Finite Element Matrices},
  type        = {Technical Report},
  number      = {TR-2004-04},
  institution = {University of Chicago},
  url         = {http://www.cs.uchicago.edu/research/publications/techreports/TR-2004-04},
  note        = {\url{http://www.cs.uchicago.edu/research/publications/techreports/TR-2004-04}},
  pages       = {14},
  month       = {May},
  year        = {2004}
}

@techreport{KirbyKnepleyScott10,
  author      = {Robert C. Kirby and Matthew G. Knepley and L. Ridgway Scott},
  title       = {Languages and Compilers for Variational Forms},
  type        = {Technical Report},
  number      = {TR-2010-09},
  institution = {University of Chicago},
  url         = {http://www.cs.uchicago.edu/research/publications/techreports/TR-2010-09},
  note        = {\url{http://www.cs.uchicago.edu/research/publications/techreports/TR-2010-09}},
  month       = {October},
  year        = {2010}
}

@techreport{KirbyKnepleyScott10b,
  author      = {Robert C. Kirby and Matthew G. Knepley and L. Ridgway Scott},
  title       = {Evaluation of the Action of Finite Element Operators},
  type        = {Technical Report},
  number      = {TR-2010-08},
  institution = {University of Chicago},
  url         = {http://www.cs.uchicago.edu/research/publications/techreports/TR-2010-08},
  note        = {\url{http://www.cs.uchicago.edu/research/publications/techreports/TR-2010-08}},
  month       = {October},
  year        = {2010}
}

@techreport{BruneKnepleyScott11,
  author      = {Peter R. Brune and Matthew G. Knepley and L. Ridgway Scott},
  title       = {Exponential grids in high-dimensional space},
  type        = {Technical Report},
  number      = {TR-2011-07},
  institution = {University of Chicago},
  url         = {http://www.cs.uchicago.edu/research/publications/techreports/TR-2011-07},
  note        = {\url{http://www.cs.uchicago.edu/research/publications/techreports/TR-2011-07}},
  month       = {December},
  year        = {2011}
}

@techreport{Zheng11,
  author      = {Liang Zheng and Taras Gerya and Matthew G. Knepley and David A. Yuen and Huai Zhang and Yaolin Shi},
  title       = {Implementation of a multigrid solver on {GPU} for {Stokes} equations with strongly variable viscosity based on {Matlab} and {CUDA}},
  type        = {Research Report},
  number      = {UMSI 2011/33},
  institution = {University of Minnesota Supercomputing Institute},
  url         = {http://static.msi.umn.edu/rreports/2011/33.pdf},
  note        = {\url{http://static.msi.umn.edu/rreports/2011/33.pdf}},
  month       = {March},
  year        = {2011}
}

@inproceedings{Zheng2010,
  author       = {Liang Zheng and Taras Gerya and David A. Yuen and Matthew G. Knepley and Huai Zhang and Yaolin Shi},
  title        = {{GPU} Implementation of {Stokes} Equation with Strongly Variable Coefficients},
  booktitle    = {Eos Transactions of the AGU},
  organization = {American Geophysical Union},
  note         = {Fall Meeting Supplemental, Abstract IN41A-1350},
  year         = {2010}
}

@incollection{TerrelKirbyKnepleyScott12,
  author    = {Andy R. Terrel and Robert C. Kirby and Matthew G. Knepley and L. Ridgway Scott and Garth N. Wells},
  title     = {Finite elements for incompressible fluids},
  editors   = {A. Logg and K.A. Mardal and G. N. Wells},
  booktitle = {Automated solutions of differential equations by the finite element method},
  series    = {Lecture Notes in Computational Science and Engineering},
  volume    = {84},
  pages     = {163--169},
  publisher = {Springer-Verlag},
  year      = {2012}
}

@incollection{KirbyKnepleyLoggScottTerrel12,
  author    = {Robert C. Kirby and Matthew G. Knepley and Anders Logg and L. Ridgway Scott and Andy R. Terrel},
  title     = {Discrete optimization of finite element matrix evaluation},
  editors   = {A. Logg and K.A. Mardal and G. N. Wells},
  booktitle = {Automated solutions of differential equations by the finite element method},
  series    = {Lecture Notes in Computational Science and Engineering},
  volume    = {84},
  pages     = {385--397},
  publisher = {Springer-Verlag},
  year      = {2012}
}

@article{BrownConveryHotesKnepleyPetropolous1993,
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@article{KirbyKnepleyLoggScott05,
  author  = {Robert C. Kirby and Matthew G. Knepley and Anders Logg and L. Ridgway Scott},
  title   = {Optimizing the evaluation of finite element matrices},
  journal = {SIAM Journal on Scientific Computing},
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@article{BardhanKnepleyAnitescu2008,
  author  = {Jaydeep P. Bardhan and Matthew G. Knepley and Mihai Anitescu},
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  journal = {Journal of Chemical Physics},
  volume  = {130},
  number  = {10},
  note    = {Selected for the March 15, 2009 issue of Virtual Journal of Biological Physics Research},
  year    = {2008}
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@article{Knepley2010,
  author  = {Stodden, V. and Knepley, M. G. and Wiggins, C. and LeVeque, R. J. and Donoho, D. and Fomel, S. and Friedlander, M. P. and Gerstein, M. and Mitchell, I. and Ouellette, L. L. and Bramble, N. W. and Brown, P. O. and Carey, V. and DeNardis, L. and Gentleman, R. and {Gezelter, J}, D. and Goodman, A. and Moore, J. E. and Pasquale, F. A. and Rolnick, J. and Seringhaus, M. and Subramanian, R.},
  title   = {{Reproducible Research: addressing the need for data and code sharing in computational science}},
  journal = {Computing in Science and Engineering},
  volume  = {12},
  number  = {5},
  pages   = {8--13},
  url     = {http://www.bepress.com/cgi/viewcontent.cgi?article=1034\&context=sagmb},
  note    = {\url{http://www.bepress.com/cgi/viewcontent.cgi?article=1034}},
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