Argonne National Laboratory

Metazen – Metadata Capture for Metagenomes

TitleMetazen – Metadata Capture for Metagenomes
Publication TypeJournal Article
Year of Publication2013
AuthorsBischof, J, Harrison, T, Paczian, T, Glass, EM, Wilke, A, Meyer, F
JournalBMC Bioinformatics
Other NumbersANL/MCS-P4085-0613
AbstractAs the impact and prevalence of large-scale metagenomic surveys grows, so does the acute need for more complete and standards compliant metadata. Metadata (data describing data) provides an essential complement to experimental data, helping to answer questions about its source, mode of collection, and reliability. Metadata collection and interpretation have become vital to the genomics and metagenomics communities, but considerable challenges remain, including exchange, curation, and distribution. Currently, tools are available for capturing basic field metadata during sampling, and for storing, updating and viewing it. Unfortunately, these tools are not specifically designed for metagenomic surveys, as they lack the appropriate metadata collection templates, a centralized storage repository, and a unique ID linking system that can be used to easily port complete and compatible metagenomic metadata into widely used assembly and sequence analysis tools. Metazen was developed to provide a comprehensive framework to enable metadata capture for metagenomic sequencing projects. Specifically, this focuses on creating a rapid, easy-to-use portal to encourage early deposition of project and sample metadata. Metazen is an interactive tool that aids users in recording their metadata in a complete and valid format. A defined set of mandatory fields captures vital information while the option to add fields provides flexibility. Metazen is available at https://github.com/MG-RAST/Metazen.  
PDFhttp://www.mcs.anl.gov/papers/P4085-0613_1.pdf