0 Publications
M. Snir, R. W. Wisniewski, J. A. Abraham, S. V. Adve, S. Bagchi, P. Balaji, J. Belak, P. Bose, F. Cappello, B. Carlson, A. A. Chien, P. Coteus, N. A. Debardeleben, P. Diniz, C. Engelmann, M. Erez, S. Fazzari, A. Geist, R. Gupta, F. Johnson. S. Krishnamoorthy, S. Leyffer, D. Liberty, S. Mitra, T. Munson, R. Schreiber, J. Stearley, E. V. Hensbergen, "Addressing Failures in Exascale Computing," Argonne Report ANL/MCS-TM-332, April 2013. [pdf]
P. Carns, Y. Yao, K. Harms, R. Latham, R. Ross, K. Antypas, "Production I/O Characterization on the Cray XE6," Preprint ANL/MCS-P4057-0413, April 2013. [pdf]
J. Brown and P. Brune, "Low-Rank Quasi-Newton Updates for Robust Jacobian Lagging in Newton Methods," Preprint ANL/MCS-P4048-0313, March 2013. [pdf]
S. Li, T. Hoefler, M. Snir, "NUMA-Aware Shared-Memory Collective Communication for MPI," Preprint ANL/MCS-P4054-0313, March 2013. [pdf]
T. G. Armstrong, J. M. Wozniak, M. Wilde, I. T. Foster, "Compiler Optimization for Distributed Dynamic Data Flow Programs," Preprint ANL/MCS-P4045-0313, March 2013. [pdf]
W. Gropp and M. Snir, "Programming for Exascale Computers," Preprint ANL/MCS-P4053-0313, March 2013. [pdf]
J. Jenkins, J. Dinan, P. Balaji, T. Peterka, N. F. Samatova, R. Thakur, "MPI Derived Datatypes Processing on Noncontiguous GPU-Resident Data," Preprint ANL/MCS-P4042-0313, March 2013. [pdf]
P. K. Romano, A. R. Siegel, B. Forget, K. Smith, "Data Decomposition of Monte Carlo Particle Transport Simulations via Tally Servers," Preprint ANL/MCS-P4044-0313, March 2013. [pdf]
A. Ekstrom, G. Baardsen, C. Forssen, G. Hagen, M. Hjorth-Jensen, G. R. Jansen, R. Machleidt, W. Nazarewicz, T. Papenbrock, J. Sarich, S. M. Wild, "An Optimized Chiral Nucleon-Nucleon Interaction at Next-To-Next-To-Leading Order," Journal, vol. 110, no. 19, Physical Review Letters, , pp. 5. Also Preprint ANL/MCS-P4046-0313, March 2013. [pdf][view online]
Z. Zhang, D. S. Katz, M. Wilde, J. M. Wozniak, I. Foster, "MTC Envelope: Defining the Capability of Large Scale Computers in the Context of Parallel Scripting Applications," Preprint ANL/MCS-P4049-0313, March 2013. [pdf]
S. Wang, J. Ward, S. Leyffer, S. M. Wild, C. Jacobsen, and S. Vogt, "Unsupervised Cell Identification on Multidimensional X-Ray Fluorescence Datasets," Preprint ANL/MCS-P4065-0413, March 2013. [pdf]
S. M. Aithal and S. M. Wild, "Development of a Fast, Robust Numerical Tool for The Design, Optimization and Control of IC Engines," Preprint ANL/MCS-P4051-0313, March 2013. [pdf]
G. Antoniu, J. Bigot, C. Blanchet, L. Bouge, F. Briant, F. Cappello, A. Costan, F. Desprez, G. Fedak, S. Gault, K. Keahey, B. Nicolae, C. Perez, A. Simonet, F. Suter, B. Tang, R. Terreux, "Scalable Data Management for Map-Reduce-based Data-Intensive Applications: A View for Cloud and Hybrid Infrastructures," Preprint ANL/MCS-P4032-0213, February 2013. [pdf]
J. Elliott, M. Glotter, N. Best, K. Boote, J. Jones, J. Hatfield, C. Rosenzweig, L. A. Smith, I. Foster, "Predicting Agricultural Impacts of Large-Scale Drought: 2012 and The Case for Better Modeling," Preprint ANL/MCS-P4035-0213, February 2013. [pdf]
V. M. Zavala, "Inference of Building Occupancy Signals Using Moving Horizon Estimation and Fourier Regularization," Preprint ANL/MCS-P4031-0213, February 2013. [pdf]
D. P. Kouri, "A Multilevel Stochastic Collocation Algorithm for Optimization of PDES with Uncertain Coefficients," Preprint ANL/MCS-P4037-0213, February 2013. [pdf]
S. Valcke, V. Balaji, A. Criag, C. DeLuca, R. Dunlap, R. W. Ford, R. Jacob, J. Larson, R. O'Kuinghttons, G. D. Riley, and M. Vertenstein, "Coupling Technologies for Earth System Modeling," Preprint ANL/MCS-P4036-0213, February 2013. [pdf]
P. Balaprakash, D. Buntinas, A. Chan, A. Guha, R. Gupta, S. H. K. Narayanan, A. A. Chien, P. Hovland, B. Norris, "Exascale Workload Characterization and Architecture Implications," Preprint ANL/MCS-P4034-0213, February 2013. [pdf]
J. Dinan, P. Balaji, D. Buntinas, D. Goodell, W. Gropp, R. Thakur, "An Implementation and Evaluation of the MPI 3.0 One-Sided Communication Interface," Preprint ANL/MCS-P4014-0113, January 2013. [pdf]
A. Tasora, M. Anitescu, S. Negrini, D. Negrut, "A Compliant Visco-Plastic Particle Contact Model Based on Differential Variational Inequalities," Preprint ANL/MCS-P4013-0113, January 2013. [pdf]
S. Abhyankar and A. J. Flueck, "Parallel-in-Space-and-Time Scheme for Implicitly Coupled Electromechanical and Electromagnetic Transients Simulation," Preprint ANL/MCS-P4012-0113, January 2013. [pdf]
J. Xu, X. Zhufu, R. Zhao, C. Li, X. Qi, L. Yang, M. Min, "Comparisons of Different Electromagnetic Solvers for Accelerator Simulations," Preprint ANL/MCS-P4025-0113, January 2013. [pdf]
J. Xu, X. Zhufu, R. Zhao, J. Sun, C. Li, L. Yang, M. Min, "Performance Evaluation for Electromagnetic Solvers with Interpolatory and Hierarchical Ne ́de ́lec Vector Bases," Preprint ANL/MCS-P4026-0113, January 2013. [pdf]
W. D. Pointer, K. Bradley, P. Fischer, M. Smith, T. Tautges, R. Ferencz, R. Martineau, R. Jain, A. Obabko, J. Billings, "Developing a Comprehensive Software Suite for Advanced Reactor Performance and Safety Analysis," Preprint ANL/MCS-P4010-0113, January 2013. [pdf]
J. M. Wozniak, T. G. Armstrong, M. Wilde, D. S. Katz, E. Lusk, I. T. Foster, "Swift/T: Scalabale Data Flow Programming for Many-Task Applications," Preprint ANL/MCS-P4018-0113, January 2013. [pdf]
J. P. Faria, R. Overbeek, F. Xia, M. Rocha, I. Rocha, C. S. Henry, "Genome-Scale Bacterial Transcriptional Regulatory Networks: Reconstruction and Integrated Analysis with Metabolic Models," Preprint ANL/MCS-P4020-0113, January 2013. [pdf]
R. K. Aziz, S. Devoid, T. Disz, R. A. Edwards, S. Gerdes, C. S. Henry, G. J. Olsen, R. Olson, R. Overbeek, B. Parrello, G. D. Pusch, R. L. Stevens, V. Vonstein, F. Xia, "SEED Servers: High-Performance Access to the SEED Genomes, Annotations, and Metabolic Models," Preprint ANL/MCS-P4019-0113, January 2013. [pdf]
T. Peterka, J. Kwan, A. Pope, H. Finkel, K. Heitmann, S. Habib, J. Wang, G. Zagaris, "Meshing the Universe: Integrating Analysis in Cosmological Simulations," Preprint ANL/MCS-P3095-1212, December 2012. [pdf]
J. M. Wozniak, T. G. Armstrong, M. Wilde, D. S. Katz, E. Lusk, I. T. Foster, "Scalable Data Flow Programming for Many-Task Applications," Preprint ANL/MCS-P4007-1212, December 2012. [pdf]
L. Wos, "The Legacy of a Great Researcher," Preprint ANL/MCS-P4009-1212, December 2012. [pdf]
J. M. Wozniak, T. G. Armstrong, M. Wilde, D. S. Katz, E. Lusk, I. T. Foster, "A Model for Tracing and Debugging Large-Scale Task-Parallel Programs with MPE," Preprint ANL/MCS-P4002-1212, December 2012. [pdf]
R. L. Jacob, J. Krishna, X. Xu, S. Mickelson, T. Tautges, M. Wilde, R. Latham, I. Foster, R. Ross, M. Hereld, J. Larson, P. Bochev, K. Peterson, M. Taylor, K. Schuchardt, J. Yin, D. Middleton, M. Haley, D. Brown, R. Brownrigg, W. Huang, D. Shea, M. Vertenstein, K. Ma, J. Xie, "Bringing Task and Data Parallelism to Analysis of Climate Model Output," Preprint ANL/MCS-P4003-1212, December 2012. [pdf]
J. M. Wozniak, M. Wilde, D. S. Katz, "JETS: Language and System Support for Many-Parallel-Task Workflows," Preprint ANL/MCS-P4005-1212, December 2012. [pdf]
J. Chen, L. Wang, M. Anitescu, "A Fast Summation Tree Code for Matern Kernel," Preprint ANL/MCS-P4001-1212, December 2012. [pdf]
C. Teng, M. Min, J. Wang, "Pseudospectral and Runge-Kutta-Nystrom Methods for Second-Order Wave Equations: Stable and Accurate Boundary Treatments," Preprint ANL/MCS-P4008-1212, December 2012. [pdf]
P. Carns, K. Harms, D. Kimpe, J. M. Wozniak, R. Ross, L. Ward, M. Curry, R. Klundt, G. Danielson, C. Karakoyunlu, J. Chandy, B. Settlemyer, W. Gropp, "A Case for Optimistic Coordination in HPC Storage Systems," Preprint ANL/MCS-P3052-1112, November 2012. [pdf]
G. C. Fox, G. Von Laszewski, J. Diaz, K. Keahey, J. Fortes, R. Figueiredo, S. Smallen, W. Smith, A. Grimshaw, "FutureGrid: A Reconfigurable Testbed for Cloud, HPC and Grid Computing," Preprint ANL/MCS-P3053-1112, November 2012. [pdf]
Z. Insepov and J. Norem, "Can Surface Cracks and Unipolar Arcs Explain Breakdown and Gradient Limits?," Preprint ANL/MCS-P3058-1112, November 2012. [pdf]
D. Goodell, S. J. Kim, R. Latham, M. Kandemir, and R. Ross, "An Evolutionary Path to Object Storage Access," Preprint ANL/MCS-P3051-1112, November 2012. [pdf]
D. Ozog, J. R. Hammond, J. Dinan, P. Balaji, S. Shende, A. Malony, "Inspector-Executor Load Balancing Algorithms for Block-Sparse Tensor Contractions," Preprint ANL/MCS-P3056-1112, November 2012. [pdf]
P. Belotti, C. Kirches, S. Leyffer, J. Linderoth, J. Luedtke, and A. Mahajan, "Mixed-Interger Nonlinear Optimization," Preprint ANL/MCS-P3060-1112, November 2012. [pdf]
V. M. Zavala, "Clustering-Based Interior-Point Strategies for Stochastic Programs," Preprint ANL/MCS-P3050-1112, November 2012. [pdf]
X. Zeng, B. A. Drewniak, E. M. Constantinescu, "Calibration of the Crop Model in the Community Land Model," Preprint ANL/MCS-P3054-1112, November 2012. [pdf]
A. R. Siegel, K. Smith, P. K. Romano, B. Forget, K. G. Felker, "Multi-Core Performance Studies of a Monte Carlo Neutron Transport Code," Preprint ANL/MCS-P3057-1112, November 2012. [pdf]
S. Abhyankar, Q. Cui, and A. J. Flueck, "Fast Power Flow Analysis using a Hybrid Current-Power Balance Formulation in Rectangular Coordinates," Preprint ANL/MCS-P3082-1112, November 2012. [pdf]
S. Abhyankar and B. Smith, "PETSc: An Advanced Math and Computing Framework for Rapidly Developing Parallel Smart Grid Applications," Preprint ANL/MCS-P3067-1112, November 2012. [pdf]
T. Nelson, G. Belter, J. G. Siek, E. Jessup, B. Norris, "Reliable Generation of High-Performance Matrix Algebra," Preprint ANL/MCS-P3048-1012, October 2012. [pdf]
D. Keyes, L.C. McInnes, C. Woodward, W. Gropp, E. Myra, M. Pernice, etc., "Multiphysics Simulations: Challenges and Opportunities," Technical Memorandum ANL/MCS-TM-321, October 2012. [pdf]
C. Sigovan, C. Muelder, K. Ma, J. Cope, K. Iskra, R. Ross, "A Visual Network Analysis Method for Large Scale Parallel I/O Systems," Preprint ANL/MCS-P3042-1012, October 2012. [pdf]
L. Grinberg, J. A. Insley, D. A. Fedosov, V. Morozov, M. E. Papka, and G. Em Karniadakis, "Tightly Coupled Atomistic-Continum Simulations of Brain Blood Flow on Petaflop Supercomputers," Computer Science Engineering, 1969. Also Preprint ANL/MCS-P3041-1012, October 2012. [pdf]
P. Carns, K. Harms, R. Latham, and R. Ross, "Performance Analysis of Darshan 2.2.3 on the Cray XE6 Platform," Technical Memorandum ANL/MCS-TM-331, October 2012. [pdf]
M. Schwanen, A. Duggleby, P. Fischer, "Orthogonal Decompostition Analysis and Optimization of Turbine Vane Endwall Horseshoe Vortex Dynamics and Heat Transfer," Preprint ANL/MCS-P3045-1012, October 2012. [pdf]
M. Anitescu, O. Roderick, J. Utke, "Derivative-Based Uncertainty Quantification: Automatic Differentiation Tools for SAS," Argonne Report ANL/MCS-TM-328, September 2012. [pdf]
M. Lubin, K. Martin, C. Petra, B. Sandikci, "On Parallelizing Dual Decomposition in Stochastic Integer Programming," Preprint ANL/MCS-P3037-0912, September 2012. [pdf]
D. P. Kouri, M. Heinkenschloos, D. Ridzal, B. G. Van Bloemen Waanders, "A Trust-Region Algorithm with Adaptive Stochastic Collocation for PDE Optimization Under Uncertainty," Preprint ANL/MCS-P3035-0912, September 2012. [pdf]
N. Goldberg, Y. Kim, S. Leyffer, T. Veselka, "Adaptively Refined Dynamic Program for Linear Spline Regression," Preprint ANL/MCS-P3040-0912, September 2012. [pdf]
O. Roderick and M. Anitescu, "Intrusive Uncertainty Quantification for NeK5000: Development of Intrusive Uncertainty Quantification for High-Dimensional, High-Fidelity Codes," Argonne Report ANL/MCS-TM-329, September 2012. [pdf]
J. Chen, L. C. Mcinnes, H. Zhang, "Analysis and Practical Use of Flexible Bicgstab," Preprint ANL/MCS-P3039-0912, September 2012. [pdf]
J. Chen and L. Li, "Parallelizing the Conjugate Gradient Algorithm for Multilevel Toeplitz Systems," Preprint ANL/MCS-P3038-0912, September 2012. [pdf]
B. Dudson, S. Farley, L. C. McInnes, "Improved Nonlinear Solvers in BOUT++," Preprint ANL/MCS-P3025-0812, August 2012. [pdf]
A. Gainaru, F. Cappello, M. Snir, W. Kramer, "Fault Prediction Under the Mircroscope: A Closer Look into HPC Systems," Preprint ANL/MCS-P3023-0812, August 2012. [pdf]
M. Min, J. Fu, A. Mametjanov, "Hybrid Programming and Performance for Beam Propagation Modeling," Preprint ANL/MCS-P3033-0812, August 2012. [pdf]
S. T. Choi, M. A. Saunders, "Algorithm & Documentation: MINRES-QLP for Singular Symmetric and Hermitian Linear Equations and Least-Squares Problems," Preprint ANL/MCS-P3027-0812, August 2012. [pdf]
D. Pugmire, T. Peterka, C. Garth, "Parallel Integral Curves," Preprint ANL/MCS-P3030-0812, August 2012. [pdf]
A. Tasora and M. Anitescu, "A Complementarity-Based Rolling Friction Model for Rigid Contacts," Preprint ANL/MCS-P3020-0812, August 2012. [pdf]
K. Iskra, K. Yoshii, R. Gupta, P. Beckman, "Power Management for Exascale," Preprint ANL/MCS-P3011-0712, July 2012. [pdf]
Z. Zhang, D. S. Katz, J. M. Wozniak, A. Espinosa, I. Foster, "Design and Analysis of Data Management in Scalable Parallel Scripting," Preprint ANL/MCS-P3012-0712, July 2012. [pdf]
C. Choudary, J. Godwin, J. Holewinski, D. Karthik, D. Lowell, A. Mametjanov, B. Norris, G. Sabin, P. Sadayappan, "Stencil-Aware GPU Optimization of Iterative Solvers*," Preprint ANL/MCS-P3008-0712, July 2012. [pdf]
A. Gutfraind, L. A. Meyers, I. Safro, "Multiscale Network Generation," Preprint ANL/MCS-P3009-0712, July 2012. [pdf]
P. Balaprakash, D. Buntinas, A. Chan, A. Guha, R. Gupta, S. H. K. Narayanan, A. A. Chien, P. Hovland, B. Norris, "Exascale Workload Characterization and Architecture Implications," Preprint ANL/MCS-P3013-0712, July 2012. [pdf]
J. Brown, B. Smith, A. Ahmadia, "Achieving Textbook Multigrid Efficiency for Hydrostatic Ice Sheet Flow," Preprint ANL/MCS-P3019-0712, July 2012. [pdf]
V. M. Zavala and M. Anitescu, "Scalable Nonlinear Programming via Exact Differentiable Penalty Functions and Trust-Region Newton Methods," Preprint ANL/MCS-P3014-0712, July 2012. [pdf]
K. Iskra, K. Yoshii, R. Gupta, P. Beckman, "Advanced Virtual Memory for Exascale," Preprint ANL/MCS-P3010-0712, July 2012. [pdf]
A. V. Obabko, P. F. Fischer, T. J. Tautges, V. M. Goloviznin, M. A. Zaytsev, V. V. Chudanov, V. A. Pervichko, A. E. Aksenova, and S. A. Karabasov, "Large Eddy Simulation of Thermo-Hydraulic Mixing in a T-Junction," Preprint ANL/MCS-P3015-0712, July 2012. [pdf]
L. Zamboni, A. Cherchi, A. F. Carril, "Characterization of Heat Waves: An Example for La Plata Basin," Preprint ANL/MCS-P3006-0712, July 2012. [pdf]
R. Jain and T. Tautges, "RGG: Reactor Geometry (&mesh) Generator," Preprint ANL/MCS-P2005-0612, June 2012. [pdf]
L. C. McInnes, B. Smith, H. Zhang, R. Tran Mills, "Hierarchical and Nested Krylov Methods for Extreme-Scale Computing," Preprint ANL/MCS-P2097-0612, June 2012. [pdf]
I. Foster, R. Kettimuthu, S. Martin, S. Tuecke, D. Milroy, B. Palen, T. Hauser, J. Braden, "Campus Bridging Made Easy via Globus Services," Preprint ANL/MCS-P3001-0612, June 2012. [pdf]
J. Dinan, D. Goodell, W. Gropp, R. Thakur, P. Balaji, "Efficient Multithreaded Context ID Allocation in MPI*," Preprint ANL/MCS-P3004-0612, June 2012. [pdf]
T. Heyn, M. Anitescu, A. Tasora, D. Negrut, "Using Krylov Subspace and Spectral Methods for Solving Complementarit Problems in Many-Body Contact Dynamics Simulation," Preprint ANL/MCS-P2099-0612, June 2012. [pdf]
T. Peterka, J. Kwan, A. Pope, H. Finkel, K. Heitmann, S. Habib, "Meshing the Universe: Identifying Voids in Cosmological Simulations Through in Situ Parallel Voronoi Tessellation," Preprint ANL/MCS-P2087-0512, May 2012. [pdf]
Z. Insepov and R. J. Miller, "Activation of Nanoflows for Fuel Cells," Preprint ANL/MCS-P2081-0512, May 2012. [pdf]
T. Peterka and R. Ross, "Versatile Communication Algorithms for Data Analysis," Preprint ANL/MCS-P2080-0512, May 2012. [pdf]
B. Adams, Z. Insepov, J. Norem, "Simulations of Fast X-Ray Detectors Based on Multichannel Plates," Preprint ANL/MCS-P2090-0512, May 2012. [pdf]
F. X. Giraldo, J. F. Kelly, E. M. Constantinescu, "Implicit-Explicit Formulations of a Three-Dimensional Nonhydrostatic Unified Model of the Atmosphere (NUMA)," Preprint ANL/MCS-P2083-0512, May 2012. [pdf]
Y. Peng, C. Knight, P. Blood, L. Crosby, G. A. Voth, "Extending Parallel Scalability of LAMMPS and Multiscale Reactive Molecular Simulations," Preprint ANL/MCS-P2085-0512, May 2012. [pdf]
D. Kim, J. W. Larson, K. Chiu, "Dynamic Load Balancing for Malleable Model Coupling," Preprint ANL/MCS-P2089-0512, May 2012. [pdf]
D. Kimpe, K. Mohror, A. Moody, B. Van Essen, M. Gokhale, R. Ross, B. R. de Supinski, "Integrated In-System Storage Architecture for High Performance Computing," Preprint ANL/MCS-P2092-0512, May 2012. [pdf]
M. L. Stein, J. Chen, M. Anitescu, "Stochastic Approximation of Score Functions for Gaussian Processes," Preprint ANL/MCS-P2091-0512, May 2012. [pdf]
A. Mametjanov, D. Lowell, C. Ma, B. Norris, "Autotuning Stencil-Based Computations on GPUs," Preprint ANL/MCS-P2094-0512, May 2012. [pdf]
S. M. Aithal, "A Comparative Study of NOx Computation Methods Coupled to Quasi-Dimensional Models in SI Engines.," Preprint ANL/MCS-P2098-0512, May 2012. [pdf]
K. Yoshii, K. Iskra, R. Gupta, P. Beckman, V. Vishwanath, C. Yu, S. Coghlan, "Evaluating Power Monitoring Capabilities on IBM Blue Gene/P and Blue Gene/Q," Preprint ANL/MCS-P2095-0512, May 2012. [pdf]
S. M. Aithal, "Analysis of the Current Signature in a Constant-Volume Combustion Chamber," Preprint ANL/MCS-P2093-0512, May 2012. [pdf]
J. Chen, "On Use of Discrete Laplace Operator for Preconditioning Kernel Matrices," Preprint ANL/MCS-P2076-0412, April 2012. [pdf]
M. Lubin, J. A. Julian Hall, C. G. Petra, M. Anitescu, "Parallel Distributed-Memory Simplex for Large-Scale Stochastic LP Problems," Preprint ANL/MCS-P2075-0412, April 2012. [pdf]
O. Roderick, M. Anitescu, Z. Wang, "Reduced Order Approximations in Uncertainty Analysis of Nuclear Engineering Applications," Preprint ANL/MCS-P2078-0412, April 2012. [pdf]
A. Mahajan, S. Leyffer, C. Kirches, "Solving Mixed-Integer Nonlinear Programs by QP-Diving," Preprint ANL/MCS-P2071-0312, March 2012. [pdf]
V. M. Zavala, "Real-Time Resolution of Conflicting Objectives in Building Energy Management: An Utopia-Tracking Approach," Preprint ANL/MCS-P2056-0312, March 2012. [pdf]
D. Kimpe, P. Carns, K. Harms, J. M. Wozniak, S. Lang, R. Ross, "AESOP: Expressing Concurrency in High-Performance System Software," Preprint ANL/MCS-P2068-0312, March 2012. [pdf]
J. Akerley, M. Greiner, A. Obabko, P. Fischer, "Flow Destabilization and Heat Transfer Augmentation in an Array of Grooved Passages with Developing Flow," Preprint ANL/MCS-P2061-0312, March 2012. [pdf]
Z. Insepov, J. Rest, A. M. Yacout, B. Ye, D. Yun, A. Y. Kuksin, G. E. Norman, V. V. Stegailov, A. V. Yanilkin, "Atomistic and Kinetic Simulations of Radiation Damage in Molybdenum," Preprint ANL/MCS-P2073-0312, March 2012. [pdf]
J. Fu, M. Min, R. Latham, C. D. Carothers, "I/O Threads to Reduce Checkpoint Blocking for an Electromagnetics Solver on Blue Gene/P and Cray XK6," Preprint ANL/MCS-P2074-0312, March 2012. [pdf]
J. J. More and S. M. Wild, "Do You Trust Derivatives or Differences?*," Preprint ANL/MCS-P2067-0312, March 2012. [pdf]
J. Dinan, P. Balaji, J. R. Hammond, S. Krishnamoorthy, V. Tipparaju, "Supporting the Global Arrays PGAS Model Using MPI One-Sided Communication," Preprint ANL/MCS-P2023-0212, February 2012. [pdf]
J. Jenkins, P. Balaji, J. Dinan, N. F. Samatova, R. Thakur, "Enabling Fast, Non contiguous GPU Data Movement in Hybrid MPI+GPU Environments," Preprint ANL/MCS-P2028-0212, February 2012. [pdf]
R. Kettimuthu, L. Lacinski, M. Link, K. Pickett, S. Tuecke, I. Foster, "Instant GridFTP," Preprint ANL/MCS-P2052-0212, February 2012. [pdf]
S. Xiao, P. Balaji, Q. Zhu, R. Thakur, S. Coghlan, H. Lin, G. Wen, J. Hong, W. Feng, "VOCL: An Optimized Environment for Transparent Virtualization of Graphics Processing Units," Preprint ANL/MCS-P2029-0212, February 2012. [pdf]
Z. Insepov, S. V. Starikov, D. Yun, A. M. Yacout, "Multiscale Simulation Models of Xe Bubble Formation in Irradiated Mo," Preprint ANL/MCS-P2047-0212, February 2012. [pdf]
A. Kannan and S. M. Wild, "Benefits of Deeper Analysis in Simulation-Based Groundwater Optimization Problems," Preprint ANL/MCS-P2043-0212, February 2012. [pdf]
J. M. Salazar, U. Diwekar, E. Constantinescu, and V. M. Zavala, "Stochastic Optimization Approach to Water Management in Cooling-Constrained Power Plants," Preprint ANL/MCS-P2026-0212, February 2012. [pdf]
A. Wilke, T. Harrison, J. Wilkening, D. Field, E. M. Glass, N. Kyrpides, K. Mavrommatis, F. Meyer, "The M5nr: A Novel Non-Redundant Database Containing Protein Sequences and Annotations from Multiple Sources and Associated Tools," Preprint ANL/MCS-P2044-0212, February 2012. [pdf]
Z. Insepov, A. Kuksin, J. Rest, S. Starikov, A. Yanilkin, A. M. Yacout, B. Ye, D. Yun, "Simulation of Ion Irradiation of Nuclear Materials and Comparison with Experiment," Preprint ANL/MCS-P2051-0212, February 2012. [pdf]
P. Balaji, D. Buntinas, D. Kimpe, "Fault Tolerance Techniques for Scalable Computing," Preprint ANL/MCS-P2037-0212, February 2012. [pdf]
N. Goldberg, S. Leyffer, T. Munson, "A New Perspective on Convex Relations of Sparse SVM," Preprint ANL/MCS-P2049-0212, February 2012. [pdf]
N. Goldberg, S. Leyffer, I. Safro, "Optimal Response to Epidemics and Cyber Attacks in Networks," Preprint ANL/MCS-P1992-0112, January 2012. [pdf]
J. Chen, P. Hovland, T. Munson, J. Utke, "An Integer Programming Approach to Optimal Derivative Accumulation," Preprint ANL/MCS-P1994-0112, January 2012. [pdf]
Kim, S. J.; Woo Son, S.; Kandemir, M.; Liao, W.; Thakur, R.; Choudhary, A., "Dynamic Tracing of Parallel I/O Activity in HPC Applications," Preprint ANL/MCS-P2007-0112, January 2012. [pdf]
J. A. Reed, J. Utke, H. S. Abdel-khalik, "Combining Automatic Differentiation Methods for High Dimensional Nonlinear Models," Preprint ANL/MCS-P2014-0112, January 2012. [pdf]
Laurent Hascoet and Jean Utke, "Handling Pointers and Dynamic Memory," Preprint ANL/MCS-P2013-0112, January 2012. [pdf]
H. Cole-Mullen, A. Lyons, J. Utke, "Storing Versus Recomputation on Multiple DAGs," Preprint ANL/MCS-P2015-0112, January 2012. [pdf]
L. Zamboni, A. Cherchi, M. Barreiro, F. Kurcharski, "Dynamic of the Impact of ENSO Flavors on Precipitation over La Plata Basin," Preprint ANL/MCS-P2009-0112, January 2012. [pdf]
E. Gawlik, T. Munson, J. Sarich, S. M. Wild, "The TAO Linearly-Constrained Augmented Lagrangian Method for PDE-Constrained Optimization," Preprint ANL/MCS-P2003-0112, January 2012. [pdf]
M. McCourt, T. D. Rognlien, L. C. McInnes, H. Zhang, "Improving Parallel Scalability for Edge Plasma Transport Simulations with Neutral Gas Species," Preprint ANL/MCS-P2018-0112, January 2012. [pdf]
J. Brown, M. G. Knepley, D. A. May, L. C. McInnes, B. Smith, "Composable LInear Solvers for Multiphysics," Preprint ANL/MCS-P2017-0112, January 2012. [pdf]
N. A. Best, J. W. Elliott, I. T. Foster, "Synthesis of a Complete Land Use/Land Cover Data Set for Conterminous United States," Preprint ANL/MCS-P1998-0112, January 2012. [pdf]
T. Munson, J. Sarich, S. Wild, S. Benson, L. C. McInnes, "TAO 2.0 Users Manual," Technical Memorandum ANL/MCS-TM-322, January 2012. [pdf]
S. Mohanty, R. Jain, S. Majumdar, T. J. Tautges, and M. Srinivasan, "Coupled Field-Structural Analysis of HTGR Fuel Brick Using Abaqus," Preprint ANL/MCS-P2008-0112, January 2012. [pdf]
K. A. Pruitt, S. Leyffer, A. M. Newman, and R. J. Braun, "Optimal Design and Dispatch of Distributed Generation Systems," Preprint ANL/MCS-P2004-0112, January 2012. [pdf]
J. Brown, M. G. Knepley, D. A. May, L. C. McInnes, B. Smith, "Composable Linear Solvers for Multiphysics," Preprint ANL/MCS-P2017-0112, January 2012. [pdf]
Y. V. Peet and P. F. Fischer, "Legendre Spectral Element Method with Nearly Incompressible Materials," Preprint ANL/MCS-P1986-1211, December 2011. [pdf]
J. Chen and S. Burer, "A First-Order Smoothing Technique for a Class of Large-Scale Linear Programs," Preprint ANL/MCS-P1971-1111, November 2011. [pdf]
Y. Liu, X. Rong, Z. Liu, S. Wu, S. Zhang, and R. Jacob, "A Random Subgrouping Scheme for Ensemble Based Filter (sEnSRF)," Preprint ANL/MCS-P1978-1111, November 2011. [pdf]
J. Elliott, I. Foster, M. Loudermilk, and Todd Munson, "Impact of Eliminating Biofuels Production on US Gasoline Prices: An Equilibrium Analysis," Preprint ANL/MCS-P1983-1111, November 2011. [pdf]
A. Kannan and S. M. Wild, "Obtaining Quadratic Models of Noisy Functions," Preprint ANL/MCS-P1975-1111, November 2011. [pdf]
H. F. Stripling, M. Anitescu, M. L. Adams, "A Generalized Adjoint Framework for Sensitivity and Global Error Estimation in Time-Dependent Nuclear Reactor Simulations," Preprint ANL/MCS-P1963-1011, October 2011. [pdf]
M. Anitescu and C. G. Petra, "Higher-Order Confidence Intervals for Stochastic Programming Using Bootstrapping," Preprint ANL/MCS-P1964-1011, October 2011. [pdf]
M. G. Rodriguez, L. E. Ortiz Uriarte, Y. Jia, K. Yoshii, R. Ross, P. H. Beckman, "Wireless Sensor Network for Data-Center Environmental Monitoring," Conference Publications, Palmerston North, IEEE Xplore, , pp. 533 - 537. Also Preprint ANL/MCS-P1935-0911, September 2011. [pdf][view online]
J. A. Gilbert and F. Meyer, "Modeling The Earth's Microbiome, A Real World Deliverable for Microbial Ecology," Microbe Magazine, American Society for Microbiology, . Also Preprint ANL/MCS-P1944-0911, September 2011. [pdf][view online]
D. Smirnova, Z. Insepov, J. Rest, A. M. Yacout, S. Starikov, A. Kuxin, V. Stegailov, G. Norman, "Developing a New Interatomic Potential for U-Mo-Xe by Using an Ab Initio Force-Matching Method," Preprint ANL/MCS-P1938-0911, September 2011. [pdf]
S. Leyffer and C. Kirches, "TACO - A Toolkit for AMPL Control Optimization," Preprint ANL/MCS-P1948-0911, September 2011. [pdf]
T. Thomas, J. Gilbert, F. Meyer, "Making the Most Out of Metagenomics - A Guide from Sampling to Data Analysis," Microbial Informatics and Experimentation, BioMed Central Ltd, . Also Preprint ANL/MCS-P1953-0911, September 2011. [pdf][view online]
I. Morozov, G. Norman, Z. Insepov, J. Norem, "Sheath Parameters for Non-Debye Plasmas: Simulations and Arc Damage," Preprint ANL/MCS-P1954-0911, September 2011. [pdf]
P. Balaprakash, S. M. Wild, B. Norris, "SPAPT: Search Problems in Automatic Performance Tuning," Proceedings of the International Conference on Computational Science, ICCS 2012, vol. 9, Procedia Computer Science, , pp. 1959--1968. Also Preprint ANL/MCS-P1956-0911, September 2011. [pdf]
S. Abhyankar, B. Smith, H. Zhang, A. Flueck, "Using PETSc to Develop Scalable Applications for Next-Generation Power Grid," HiPCNA-PG '11, New York, NY, USA, The ACM Digital Library, , pp. 67-74. Also Preprint ANL/MCS-P1957-0911, September 2011. [pdf][view online]
F. Isaila, J. Garcia Blas, J. Carretero, R. Latham, R. Ross, "Design and Evaluation of Multiple-Level Data Staging for Blue Gene Systems," Preprint ANL/MCS-P1950-0911, September 2011. [pdf]
J. M. Wozniak, K. Maheshwari, Z. Zhang, T. Munson, I. Foster, D. Katz, E. Lusk, M. Ripeanu, M. Wilde, "Parallel Evaluation of Dataflow Programs for Extreme-Scale Many-Task Computing," Preprint ANL/MCS-P1933-0911, September 2011. [pdf]
V. M. Zavala, "Proactive Energy Management for High-Performance Buildings: Exploiting and Motivating New Sensor Technologies," Preprint ANL/MCS-P1951-0911, September 2011. [pdf]
J. Chen, "A Deflated Version of the Block Conjugate Gradient Algorithm with an Application to Gaussian Process Maximum Likelihood Estimation," Preprint ANL/MCS-P1927-0811, August 2011. [pdf]
K. P. Keegan, W. L. Trimble, J. Wilkening, A. Wilke, T. Harrison, M. D'Souza, F. Meyer, "Platform-Indepedent Method for Detecting Errors in Metagenomic Sequencing Data: DRISEE," Preprint ANL/MCS-P1924-0811, August 2011. [pdf]
S.M. Aithal and D. Upadhyay, "Feasibility Study of the Potential Use of Chemistry Based Emission Predictions for Real-Time Control of Modern Diesel Engines," Applied Energy, vol. 91, no. 1, Elsevier, , pp. 475-482. Also Preprint ANL/MCS-P1913-0711, July 2011. [pdf][view online]
M. Anitescu, X. Zeng, E. M. Constantinescu, "A Low-Memory Approach for Best-State Estimation of Hidden Markov Models with Model Error," Preprint ANL/MCS-P1919-0711, July 2011. [pdf]
B. Allen, J. Bresnahan, L. Childers, I. Foster, G. Kandaswamy, R. Kettimuthu, J. Kordas, M. Link, S. Martin, K. Pickett, and S. Tuecke, "Globus Online: Radical Simplification of Data Movement via SasS," Preprint ANL/MCS-P1905-0611, June 2011. [pdf]
V. M. Zavala, "Real-Time Optimization Strategies for Building Systems," Preprint ANL/MCS-P1911-0611, June 2011. [pdf]
D. Buntinas, "Scalable Distributed Consensus to Support MPI Fault Tolerances," Technical Memorandum ANL/MCS-TM-314, June 2011. [pdf]
I. T. Foster, J. Boverhof, A. Chervenak, L. Childers, A. DeSchoen, G. Garzoglio, D. Gunter, B. Holzman, G. Kandaswamy, R. Kettimuthu, J. Kordas, M. Livny, S. Martin, P. Mhashilkar, Z. Miller, T. Samak, M. Su, S. Tuecke, V. Venkataswamy, C. Ward, C. Weiss, "Reliable High-Performance Data Transfer via Globus Online," Preprint ANL/MCS-P1904-0611, June 2011. [pdf]
I. T. Foster, J. Boverhof, A. Chervenak, L. Childers, A. DeSchoen, G. Garzoglio, D. Gunter, B. Holzman, G. Kandaswamy, R. Kettimuthu, J. Kordas, M. Livny, S. Martin, P. Mhashilkar, Z. Miller. T. Samak, M.-H. Su, S. Tuecke, V. Venkataswamy, C. Ward, and C. Weiss, "Reliable High-Performance Data Transfer via Globus Online," Preprint ANL/MCS-P1904-0611, June 2011. [pdf]
A. V. Obabko, P. F. Fischer, T. J. Tautges, S. Karabasov, V. M. Goloviznin, M. A. Zaytsev, V. V. Chudanov, V. A. Pervichkno, and A. E. Aksenova, "CFD VAlidation in OECD/NEA T-Junction Benchmark," Argonne Report ANL/NE-11/25, June 2011. [pdf]
G. Belter, E. Jessup, I. Karlin, T. Nelson, B. Norris, and J. Siek, "Exploring the Optimization Space for Build to Order Matrix Algebra," Preprint ANL/MCS-P1890-0511, May 2011. [pdf]
V. M. Zavala, D. Skow, T. Celinski, and P. Dickinson, "Techno-Economic Evaluation of a Next-Generation Building Energy Management System," Technical Memorandum ANL/MCS-TM-313, May 2011. [pdf]
T. J. Tautges and R. Jain, "Creating Geometry and Mesh Models for Nuclear Reactor Core Geometries Using a Lattice Hierarchy-Based Approach," Preprint ANL/MCS-P1897-0511, May 2011. [pdf]
M. Min and P. Fischer, "Performance Analysis on the IBM Blue Gene/P for Wakefield Calculations," Proceedings of 2011 Particle Accelerator Conference, New York, NY, USA, PAC'11 OC/IEEE, , pp. 1737-1739. Also Preprint ANL/mCS-P1870-0411, April 2011. [pdf][view online]
J. R. Hammond, J. Dinan, P. Balaji, I. Kabadshow, S. Potluri, and V. Tipparaju, "OSPRI: An Optimized One-Sided Communication Runtime for Leadership-Class Machines," The 6th Conference on Partitioned Global Address Space Programming Models, Santa Barbara, CA, . Also Preprint ANL/MCS-P1880-0411, April 2011. [pdf]
P. Balaprakash, S. M. Wild, and B. Norris, "SPAPT: Search Problems in Automatic Performance Tuning," Preprint ANL/MCS-P1872-0411, April 2011. [pdf]
Z. Meglicki, B. Norris, and S. Gray, "Computations on Arbitrary Surfaces in FDTD Space," Preprint ANL/MCS-P1883-0411, April 2011. [pdf]
J. Cope, N. Liu, S. Lang, P. Carns, C. Carothers, and R. Ross, "CODES: Enabling Co-Design of Multi-Layer Exascale Storage Architectures," Preprint ANL/MCS-P1884-0411, April 2011. [pdf]
Z. Insepov, V. Ivanov, S. Jokela, and M. Wetstein, "Comparison of Back-Scattering Properties of Electron Emission Materials," Proceedings of 2011 Particle Accelerator Conference, New York, NY, USA, Accelerator Technology, , pp. 817-819. Also Preprint ANL/MCS-P1855-0311, March 2011. [pdf][view online]
J. Chen and S. Burer, "Globally Solving Nonconvex QPs via Completely Positive Programming," Mathematical Programming Computation, vol. 4, Mathematical Prog. Comp., , pp. 33-52. Also Preprint ANL/MCS-P1837-0211, February 2011. [pdf][view online]
F. You and I. E. Grossmann, "Multicut Benders Decomposition Algorithm for Process Supply Chain Planning under Uncertainty," Preprint ANL/MCS-P1844-0211, February 2011. [pdf]
V. M. Zavala and M. Anitescu, "New Insights into the Dynamic Stability of Wholesale Electricity Markets," Preprint ANL/MCS-P1839-0211, February 2011. [pdf]
R. Latham, C. Daley, W.-K. Liao, K. Gao, R. Ross, A. Dubey, and A. Choudhary, "A Case Study for Scientific I/O: Improving the FLASH Astrophysics Code," A case study for scientific I/O: improving the FLASH astrophysics code, vol. 5, Computational Science & Discovery, . Also Preprint ANL/MCS-P1819-0111, January 2011. [pdf]
O. Roderick, Z. Wang, and M. Anitescu, "Dimensionality Reduction for Uncertainty Quantification of Nuclear Engineering Models," Preprint ANL/MCS-P1832-0111, January 2011. [pdf]
V. M. Zavala and M. Anitescu, "On the Dynamic Stability of Electricity Markets," Preprint ANL/MCS-P1834-0111, January 2011. [pdf]
M. Min and P. Fischer, "An Efficient High-Order Time Integration Method for Spectral-Element Discontinuous Galerkin Simulations in Electromagnetics," Preprint ANL/MCS-P1830-0111, January 2011. [pdf]
A. P. Craig, M. Vertenstein, and R. Jacob, "A New Flexible Coupler for Earth System Modeling Developed for CCSM4 and CESM1," International Journal of High Performance Computing Applications, vol. 25, no. 4, . Also Preprint ANL/MCS-P1838-0111, January 2011. [pdf][view online]
J. Lottes, "Independent Quality Measures for Symmetric Algebraic Multigrid Components," Preprint ANL/MCS-P1820-0111, January 2011. [pdf]
R. Latham, "The Paralel-netCDF I/O Library," Preprint ANL/MCS-P1713-0110, December 2010. [pdf]
A. S. Warlaumont, H. C. Lee, M. Benayoun, R. L. Stevens, and M. Hereld, "Systematic Comparison of the Behaviors Produced by Computational Models of Epileptic Neocortex," J. CLinical Neurophysicology, vol. 27, no. 6, , pp. 479-483. [pdf]
J. A. Gilbert, F. Meyer, J. Jansson, J. Gordon, N. Pace, J. Tiedje, R. Ley, N. Fierer, D. Field, N. Kyrpides, F.-O. Glockner, H.-P. Klenk, K. E. Wommack, E. Glass, K. Docherty, R. Gallery, R. Stevens, and R. Knight, "The Earth Microbiome Project," Preprint ANL/MCS-P1813-1210, December 2010. [pdf]
J. Cope, K. Iskra, D. Kimpe, and R. Ross, "Bridging HPC and Grid File I/O with IOFSL," Preprint ANL/MCS-P1816-1210, December 2010. [pdf]
Y. Li, M. Anitescu, O. Roderick, and F. Hickernell, "Orthogonal Bases for Polynomial Regression with Derivative Information in Uncertainty Quantification," Preprint ANL/MCS-P1806-1110, November 2010. [pdf]
Brian A. Lockwood and Mihai Anitescu, "Gradient-Enhanced Universal Kriging for Uncertainty Propagation," Preprint ANL/MCS-P1808-1110, November 2010. [pdf]
A. Kannan and V. M. Zavala, "A Game-Theoretical Dynamic Model for Electricity Markets," Preprint ANL/MCS-P1792-1010, October 2010. [pdf]
D. A. Antonopoulos, E. M. Glass, and F. Meyer, "Analyzing Metagenomic Data: Inferring Microbial Community Function with MG-RAST," Preprint ANL/MCS-P1800-1010, October 2010. [pdf]
T. G. Armstrong, Z. Zhang, D. S. Katz, M. Wilde, and I. T. Foster, "Scheduling Many-Task Workloads on Supercomputers: Dealing with Trailing Tasks," Preprint ANL/MCS-P1799-1010, October 2010. [pdf]
Z. Insepov, V. Ivanov, S. J. Jopkela, I. Veryovkin, A. Zinovev, and H. Frisch, "Comparison of Secondary Electron Emission Simulation to Experiment," Preprint ANL/MCS-P1793-1010, October 2010. [pdf]
J. Xu, B. Mustapha, and M. Min, "Efficient Numerical and Parallel Methods for Beam Dynamics Simulations," Preprint ANL/MCS-P1803-1010, October 2010. [pdf]
J. Fu, M. Min, R. Latham, C. D. Carothers, "Parallel I/O Performance for Application-Level Checkpointing on the Blue Gene/P System," Preprint ANL/MCS-P1804-1010, October 2010. [pdf]
F. Isaila, J. G. Blas, J. Carretero, R. Latham, and R. Ross, "Design and Evaluation of Multiple Level Data Staging for Blue Gene Systems," Preprint ANL/MCS-P1789-0910, September 2010. [pdf]
P. Carns, K. Harms, W. Allcock, C. Bacon, S. Lang, R. Latham, and R. Ross, "Storage Access Characteristics of Computational Science Applications," Preprint ANL/MCS-P1791-0910, September 2010. [pdf]
S. J. Kim, Y. Zhang, S. W. Son, R. Prabhakar, M. Kandemir, C. Patrick, W.-K. Liao, and A. Choudhary, "Automated Tracing of I/O Stack," Preprint ANL/MCS-P1853-0910, September 2010. [pdf]
Z. Insepov, J. Norem, and S. Veitzer, "Ion Solid Interaction and Surface Modification at rf Breakdown in High-Gradient Linacs," Preprint ANL/MCS-P1781-0810, August 2010. [pdf]
V. Minden, B. Smith, and M. G. Knepley, "Preliminary Implementation of PETSc Using GPUs," Preprint ANL/MCS0P1787-0810, August 2010. [pdf]
J. J. More' and S. M. Wild, "Estimating Derivatives of Noisy Simulations," Preprint ANL/MCS-P1785-0810, August 2010. [pdf]
V. M. Zavala, A. Botterud, E. Constantinescu, and J. Wang, "Computational and Economic Limitations of Dispatch Operations in the Next-Generation Power Grid," Preprint ANL/MCS-P1780-0710, July 2010. [pdf]
R. T. Mills, V. Sripathi, G. Mahinthakumar, G. E. Hammond, P. C. Lichtner, and B. F. Smith, "Engineering PFLOTRAN for Scalable Performance on Cray XT and IBM BlueGene Architectures," Preprint ANL/MCS-P1779-0710, July 2010. [pdf]
D. Negrut, A. Tasora, M. Anitescu, H. Mazhar, T. Heyn, and A. Pazouki, "Solving Large Multibody Dynamics Problems on the GPU," Preprint ANL/MCS-P1777-0710, July 2010. [pdf]
S. Leyffer and A. Mahajan, "Software for Nonlinearly Constrained Optimization," Preprint ANL/MCS-P1768-0610, June 2010. [pdf]
W. Wu, T. Uram, M. Wilde, M. Hereld, and M. E. Papka, "Accelerating Science Gateway Development with Web 2.0 and Swift," Preprint ANL/MCS-P1765-0610, June 2010. [pdf]
T. Hoefler, W. Gropp, R. Thakur, and J. L. Traff, "Toward Performance Models of MPI Implementations for Understanding Application Scaling Issues," Preprint ANL/MCS-P1758-0610, June 2010. [pdf]
R. Overbeek, R. Aziz, D. Bartels, T. Disz, R. Edwards, S. Gerdes, C. Henry, G. Olsen, R. Olson, A. Osterman, T. Paczian, B. Parrello, G. D. Pusch, A. Rodriguez, R. Stevens, O. Vassieva, V. Vonstein, A. Wilke, and O. Zagnitko, "Programmatic Access to the SEED Data Via the Network," Preprint ANL/MCS-P1757-0610, June 2010. [pdf]
C. S. Henry, R. Overbeek, and R. L. Stevens, "Building the Blueprint of Life," Preprint ANL/MCS-P1772-0610, June 2010. [pdf]
T. Peterka, W. Kendall, D. Goodell, B. Nouanesengsey, H.-W. Shen, J. Huang, K. Moreland, R. Thakur, and R. B. Ross, "Performance of Communication Patterns for Extreme-Scale Analysis and Visualization," Preprint ANL/MCS-P1774-0610, June 2010. [pdf]
A. Mahajan, "Presolving Mixed Integer Linear Programs," Preprint ANL/MCS-P1752-0510, May 2010. [pdf]
J. M. Wozniak, S. W. Son, and R. Ross, "Distributed Object Storage Rebuild Analysis via Simulation with GOBS," Preprint ANL/MCS-P1749-0510, May 2010. [pdf]
G. D. Hart and M. Anitescu, "An O(m+n) Measure of Penetration Depth between Convex Polyhedral Bodies for Rigid Multibody Dynamics," Preprint ANL/MCS-P1753-0510, May 2010. [pdf]
B. Kreaseck, M. M. Strout, and P. Hovland, "Depth Analysis of MPI Programs," Preprint ANL/MCS-P1754-0510, May 2010. [pdf]
W. Wu, T. D. Uram, M. Wilde, M. Hereld, and M. E. Papka, "A Web 2.0-Based Scientific Application Framework," Preprint ANL/MCS-P1750-0510, May 2010. [pdf]
L. M. R. Gadelha Jr., B. Clifford, M. Mattoso, M. Wilde, and I. Foster, "Provenance Management in Swift with Implementation Details," . Also Technical Memorandum ANL/MCS-TM-311, May 2010. [pdf]
A. Alessandri, M. Baglietto, G. Battistelli, and V. Zavala, "Advances in Moving Horizon Estimation for Nonlinear Systems," Preprint ANL/MCS-P1743-0410, April 2010. [pdf]
I. Safro and B. Temkin, "Multiscale Approach for the Network Compression-Friendly Ordering," Preprint ANL/MCS-P1751-0410, April 2010. [pdf]
V. M. Zavala and M. Anitescu, "Achieving Higher Frequencies in Large-Scale Nonlinear Model Predictive Control," Preprint ANL/MCS-P1742-0410, April 2010. [pdf]
J. M. Wozniak, B. Jacobs, R. Latham, S. Lang, S. W. Son, and R. Ross, "C-MPI: A DHT Implementation for Grid and HPC Environments," Preprint ANL/MCS-P1746-0410, April 2010. [pdf]
J. Elliott, M. Franklin, I. Foster, K. Judd, and T. Munson, "Propagation of Data Error and Parametric Sensitivity in Computable General Equilibrium Model Forecasts," Preprint ANL/MCS-P1650-0709, March 2010. [pdf]
J. W. Larson, "Can We Define Climate Using Information Theory?," Preprint ANL/MCS-P1738-0310, March 2010. [pdf]
S. Leyffer, "Experiments with MINLP Branching Techniques," Preprint ANL/MCS-P1734-0310, March 2010. [pdf]
V. M. Zavala, J. Wang, S. Leyffer, E. M. Constantinescu, M. Anitescu, and G. Conzelmann, "Proactive Energy Management for Next-Generation Building Systems," Preprint ANL/MCS-P1728-0210, February 2010. [pdf]
M. Hereld, J. Insley, E. Olson, M. E. Papka, T. Uram, and V. Vishwanath, "Modeling Resource-Coupled Computations," Preprint ANL/MCS-P1724-0210, February 2010. [pdf]
H. Subramoni, P. Lai, R. Kettimuthu, and D. K. Panda, "High Performance Data Transfer in Grid Environment Using GridFTP over InfiniBand," Preprint ANL/MCS-P1723-0210, February 2010. [pdf]
R. Kottmann, A. Wilke, F. Meyer, and F. O. Glockner, "Bioinformatic Resources for Marine Microbial Genomics," Preprint ANL/MCS-P1715-0110, January 2010. [pdf]
A. Lyons, I. Safro, and J. Utke, "Randomized Heuristics for Expjloiting Jacobian Scarcity," Preprint ANL/MCS-P1716-0110, January 2010. [pdf]
J. Elliott, I. Foster, S. Kortum, G. K. Jush, T. Munson, D. Weisbach, "Unilateral Carbon Taxes, Border Tax Adjustments and Carbon Leakage," Preprint ANL/MCS-P1711-0110, January 2010. [pdf]
M. Alexe, O. Roderick, J. Utke, M. Anitescu, P. Hovland, and T. Fanning, "Automatic Differentiation of Codes in Nuclear Engineering Applications," Technical Memorandum ANL/MCS-TM-310, December 2009. [pdf]
Y. Hong, T. Peterka, and H.-W. Shen, "Histogram-Based I/O Optimization for Visualizing Large-Scale Data," Preprint ANL/MCS-P1698-1209, December 2009. [pdf]
D. S. Katz, J. Daly, N. DeBardeleben, M. Elnozahy, B. Kramer, L. Lathrop, N. Nystrom, K. Milfeld, S. Sanielevici, S. Cott, and L. Votta, "2009 Fault Tolerance for Extreme-Scale Computing Workshop, Albuquerque, NM - March 19-20, 2009," Technical Memorandum ANL/MCS-TM-312, December 2009. [pdf]
L. Wolf and G. W. Pieper, "Biology at the Exascale," Preprint ANL/MCS-P1706-1209, December 2009. [pdf]
W. Guan, A. Gray, and S. Leyffer, "Mixed-Integer Support Vector Machine," Preprint ANL/MCS-P1697-1209, December 2009. [pdf]
M. Rocklin and E. M. Constantinescu, "Adjoint Sensitivity Analysis for Wind Power Generation," Preprint ANL/MCS-P1704-1209, December 2009. [pdf]
K. Yoshii, K. Iskra, H. Naik, P. Beckman, and P. C. Broekema, "Performance and Scalability Evaluation of Big Memory," Preprint ANL/MCS-P1690-1109, November 2009. [pdf]
E. M. Glass, J. Wilkening, A. Wilke, D. Antonopoulos, and F. Meyer, "Using the Metagenomics RAST Server (MG-RAST) for Analyzing Shotgun Metagenomes," Preprint ANL/MCS-P1695-1109, November 2009. [pdf]
J. Chen, M. Anitescu, and Y. Saad, "Computing f(A)b via Least Squares Polynomial Approximations," Preprint ANL/MCS-P1693-1109, November 2009. [pdf]
A. Tasora and M. Anitescu, "A Matrix-Free Cone Complementarity Approach for Solving Large-Scale, Nonsmooth, Ridig Body Dynamics," Preprint ANL/MCS-P1692-1109, November 2009. [pdf]
A. Guerra, A. M. Newman, and S. Leyffer, "Concrete Structure Design Using Mixed-Integer Nonlinear Programming with Complementarity Constraints," Preprint ANL/MCS-P1869-1109, November 2009. [pdf]
V. M. Zavala, E. M. Constantinescu, and M. Anitescu, "Economic Impacts of Advanced Weather Forecasting in Energy System Operations," Preprint ANL/MCS-P1687-1009, October 2009. [pdf]
S. Narayan, J. A. Chandy, S. Lang, P. Carns, and R. Ross, "Uncovering Errors: The Cost of Detecting Silent Data Corruption," Preprint ANL/MCS-P1689-1009, October 2009.
J. Chen and I. Safro, "Algebraic Distance on Graphs," Preprint ANL/MCS-P1696-1009, October 2009. [pdf]
S. H. K. Narayanan, B. Norris, and P. D. Hovland, "Generating Performance Bounds from Source Code," Preprint ANL/MCS-P1685-1009, October 2009. [pdf]
H. Fang, S. Leyffer, and T. Munson, "A Pivoting Algorithm for Linear Programming with Linear Complementarity Constraints," Optimization Methods Software , Optimization Community, . Also Preprint ANL/MCS-P1680-1009, October 2009. [pdf][view online]
E. M Constantinescu, V. M. Zavala, M. Rocklin, S. Lee, and M. Anitescu, "Unit Commitment with Wind Power Generation: Integrating Wind Forecast Uncertainty and Stochastic Programming," Technical Memorandum ANL/MCS-TM-309, September 2009. [pdf]
A. Lyons, "Acyclic and Star Colorings of Cographs," Preprint ANL/MCS-P1675-0909, September 2009. [pdf]
J. Chen and I. Safro, "A Measure of the Connection Strengths between Graph Vertices with Applications," Preprint ANL/MCS-P1677-0909, September 2009. [pdf]
P. Balaji, H. Naik, and N. Desai, "Understanding Network Saturation Behavior on Large-Scale Blue Gene/P Systems," Proceedings of the 2009 15th International Conference on Parallel and Distributed Systems, IEEE Computer Society, , pp. 586-593. Also Preprint ANL/MCS-P1671-0909, September 2009. [pdf][view online]
Z. Hou, M. Wilde, X. Zhou, I. Foster, and J. Tie, "ADEM: An Automation Tool for Application Software Deployment and Management on OSG," Preprint ANL/MCS-P1659-0809, August 2009. [pdf]
S. W. Son, M. Kandemir, Y. Zhang, and R. Garg, "Topology-Aware I/O Caching for Shared Storage Systems," Preprint ANL/MCS-P1668-0809, August 2009. [pdf]
V. Bui, B. Norris, and L. C. McInnes, "An Automated Component-Based Performance Experiment Environment," Proceedings of the 2009 Workshop on Component-Based High Performance Computing, Portland, Oregon, USA, ACM, . Also Preprint ANL/MCS-P1666-0809, August 2009. [pdf][view online]
B. Smith and H. Zhang, "Sparse Triangular Solve Revisited: Data Layout Crucial to Better Performance," Preprint ANL/MCS-P1658-0809, August 2009. [pdf]
S. Lang, R. Latham, D. Kimpe, and R. Ross, "Interfaces for Coordinated Access in the File System," Preprint ANL/MCS-P1662-0809, August 2009. [pdf]
C. Stacey, M. Trefonides, T. Kendall, and B. Finley, "The Water Fountain vs. the Fire Hose: An Examination and Comparison of Two Large Enterprise Mail Service Migrations," Preprint ANL/MCS-P1669-0809, August 2009. [pdf]
B. Smith, "PETSc - The Portable, Extensible Toolkit for Scientific Computation," Preprint ANL/MCS-P1667-0809, August 2009. [pdf]
S. Lang, P. Carns, R. Latham, R. Ross, K. Harms, and W. Allcock, "I/O Performance Challenges at Leadership Scale," Proceedings of the Conference on High Performance Computing Networking, Storage and Analysis, Portland, Oregon, ACM, . Also Preprint ANL/MCS-P1648-0709, July 2009. [pdf][view online]
B. Sotomayor, R. S. Montero, I. M. Llorente, and I. Foster, "An Open Source Solution for Virtual Infrastructure Management in Private and Hybrid Clouds," Preprint ANL/MCS-P1649-0709, July 2009. [pdf]
W. Liu, R. Kettimuthu, B. Tieman, R. Madduri, B. Li, and I. Foster, "GridFTP GUI: An Easy and Efficient Way to Transfer Data in Grid," Preprint ANL/MCS-P1655-0709, July 2009. [pdf]
F. Siebenlist, R. Ananthakrishnan, D. E. Bernholdt, L. Cinquini, I. T. Foster, D. E. Middleton, N. Miller, and D. N. Williams, "Earth System Grid Authentication Infrastructure: Integrating Local Authentication, OpenID and PKI," Preprint ANL/MCS-P1627-0509, May 2009. [pdf]
E. M. Constantinescu and A. Sandu, "Achieving Very High Order for Implicit Explicit Time Stepping: Extrapolation Methods," Technical Memorandum ANL/MCS-TM-306, April 2009. [pdf]
W. Feng, P. Balaji, and A. Singh, "Network Interface Cards as First-Class Citizens," Preprint ANL/MCS-P1599-0409, April 2009. [pdf]
J. Bresnahan, M. Link, R. Kettimuthu, and I. Foster, "UDT as an Alternative Transport Protocol for GridFTP," Preprint ANL/MCS-P1614A-0409, April 2009. [pdf]
G. Hocky, M. Wilde, J. DeBartolo, M. Hategan, I. Foster, T. R. Sosnick, K. F. Freed, "Towards Petascale ab initio Protein Folding Through Parallel Scripting," Preprint ANL/MCS-P1612-0409, April 2009. [pdf]
M. Min and P. F. Fischer, "Spectral-Element Discontinuous Galerkin (SEDG) Simulations with a Moving Window Algorithm for Wakefield Calculations," Preprint ANL/MCS-P1615-0409, April 2009. [pdf]
A. Lyons, "Acyclic and Star Colorings of Joins of Graphs and an Algorithm for Cographs," Proc. 8th Cologne_Twente Workshop on Graphs and Combinatorial Optimization, , pp. 199-202. Also Preprint ANL/MCS-P1610-0409, April 2009. [pdf]
J. W. Larson, "Information-Theoretic Strategies for Quantifying Variability and Model-Reality Comparison in the Climate System," Preprint ANL/MCS-P1609-0409, April 2009. [pdf]
J. Utke and U. Naumann, "Combinatorial Problems in Open/AD," Preprint ANL/MCS-P1595-0309, March 2009. [pdf]
B. Norris, A. Hartono, E. Jessup, and J. Siek, "Generating Empirically Optimized Composed Matrix Kernels from MATLAB Prototypes," Proceedings of the 9th International Conference on Computational Science: Part I, Baton Rouge, LA, USA, Springer-Verlag, , pp. 248-258. Also Preprint ANL/MCS-P1581-0209, February 2009. [pdf][view online]
M. M. Strout, N. Osheim, D. Rostron, P. D. Hovland, and A. Pothen, "Evaluation of Hierarchical Mesh Reorderings," Computational Science, ICCS 2009, vol. 5544, Springer Berlin/Heidelberg, , pp. 540-549. Also Preprint ANL/MCS-P1578-0209, February 2009. [pdf][view online]
C. S. Henry, J. F. Zinner, M. P. Cohoon, and R. L. Stevens, "iBsu1103: An Improved Genome-Scale MetabolicModel of B. subtilis Based on SEED Annotations," Preprint ANL/MCS-P1579-0209, February 2009. [pdf]
I. Safro, P. Hovland, J. Shin, and M. Strout, "Improving Random Walk Performance," Preprint ANL/MCS-P1585-0209, February 2009. [pdf]
V. M. Zavala, E. M. Constantinescu, T. Krause, and M. Anitescu, "Weather Forecast-Based Optimization of Integrated Energy Systems," Technical Memorandum ANL/MCS-TM-305, February 2009. [pdf]
O. Roderick and I. Safro, "Polynomial Interpolation for Predicting Decisions and Recovering Missing Data," Preprint ANL/MCS-P1586-0209, February 2009. [pdf]
J. Bresnahan, M. Link, R. Kettimuthu, and I. Foster, "GridFTP Multilinking," Preprint ANL/MCS-P1582-0209, February 2009. [pdf]
O. Roderick and I. Safro, "Learning of Highly-Filtered Data Manifold Using Spectral Methods," Preprint ANL/MCS-P1586-0209, February 2009. [pdf]
S. M. Wild and C. Shoemaker, "Global Convergence of Radial Basis Function Trust Region Derivative-Free Algorithms," Preprint ANL/MCS-P1580-0209, February 2009. [pdf]
V. M. Zavala, M. Anitescu, and T. Krause, "On the Optimal On-Line Management of Photovoltaic-Hydrogen Hybrid Energy Systems," Preprint ANL/MCS-P1569-0109, January 2009. [pdf]
T. J. Tautges, "Canonical Numbering Systems for Finite-Element Codes," Preprint ANL/MCS-P1573-0109, January 2009. [pdf]
E. Constantinescu and A. Sandu, "Explicit Time Stepping Methods with High Stage Order and Monotonicity Properties," Preprint ANL/MCS-P1576-0109, January 2009. [pdf]
E. Constantinescu and A. Sandu, "Optimal Explicit Strong-Stability-Preserving General Linear Methods: Complete Results," Technical Memorandum ANL/MCS-TM-304, January 2009. [pdf]
M. Hereld, R. Stevens, T. Sterling, and G. R. Gao, "Structured Hints: Extracting and Abstracting Domain Expertise," Technical Memorandum ANL/MCS-TM-303, January 2009. [pdf]
M. Kumar, V. Chaube, P. Balaji, W. Feng, and H.-W. Jin, "Making a Case for Proactive Flow Control in Optical Circuit-Switched Networks," Preprint ANL/MCS-P1601-1208, December 2008. [pdf]
Q. Li, M. C. Ferris, and T. Munson, "Linear Algebra Enhancements to the PATH Solver," Preprint ANL/MCS-P1565-1208, December 2008. [pdf]
H. Lin, P. Balaji, R. Poole, C. Sosa, X. Ma, and W.-C. Feng, "Massively Parallel Genomic Sequence Search on the Blue Gene/P Architecture," Preprint ANL/MCS-P1602-1108, November 2008. [pdf]
T. Scogland, P. Balaji, W. Feng, and G. Narayanaswamy, "Asymmetric Interactions in Symmettric Multi-core Systems: Analysis, Enhancements, and Evaluation," Preprint ANl/MCS-P1603-1108, November 2008. [pdf]
M. Vilayannur, S. Lang, R. Ross, R. Klundt, and L. Ward, "Extending the POSIX I/O Interface: A Parallel File System Perspective," Technical Memorandum ANL/MCS-TM-302, October 2008. [pdf]
L. Childers, L. Liming, and I. Foster, "Perspectives on Distributed Computing: Thirty People, Four User Types, and the Distributed Computing User Experience," Argonne Report ANL/MCS/CI-31, September 2008. [pdf]
Z. Insepov, J. Norem, A. Hassanein, and A. T. Wu, "Advanced Surface Polishing for Accelerator Technology using Ion Beams," Preprint ANL/MCS-P1531-0808, August 2008. [pdf]
J. Utke, L. Hascoet, C. Hill, P. Hovland, and U. Naumann, "Toward Adjoinable MPI," Preprint ANL/MCS-P1530-0808, August 2008. [pdf]
A. Tasora and M. Anitescu, "A Fast NCP Sovler for Large Rigid-Body Problems with Contacts, Friction, and Joints," Preprint ANL/MCS-P1476-0108, January 2008. [pdf]
J. J. More' and S. M. Wild, "Benchmarking Derivative-Free Optimization Algorithms," Preprint ANL/MCS-P1471-1207, December 2007. [pdf]
M. Islam, P. Balaji, G. Sabin, and P. Sadayappan, "Analyzing and Minimizing the Impact of Opportunity Cost in QoS-aware Job Scheduling," Proceedings of the 2007 International Conference on Parallel Processing, 1969. Also Preprint ANL/MCS-P1605-1207, December 2007. [pdf]
C. Rabiti, M. A. Smith, W. Yang, G. Palmiotti, A. Caceres, A. Siegel, T. J. Tautges, J. Lottes, P. Fischer, and D. Kaushik, "Status Report on SHARP Coupling Framework," Argonne Report ANL-AFCI-215, September 2007. [pdf]
S. Leyffer and T. Munson, "A Globally Convergent Filter Method for MPECs," Preprint ANL/MCS-P1457-0907, September 2007. [pdf]
J. M. Dennis, R. Jacob, M. Vertenstein, T. Craig, and R. Loy, "Toward an Ultra-High Resolution Community Climate System Model for the BlueGene Platform," Journal of Physics: Conference Series, vol. 78, , pp. 012030. Also Preprint ANL/MCS-P1446-0707, July 2007. [pdf]
D. Buntinas, G. Mercier, and W. Gropp, "Implementation and Evaluation of Shared-Memory Communication and Synchronization Operations in MPICH2 using the Nemesis Communication Subsystem," Parallel Computing, vol. 33, no. 9, Elsevier, , pp. 634-644. [pdf][view online]
J. W. Larson, "Ten Organising Principles for Coupling in Multiphysics and Multiscale Models," ANZIAM, vol. 48, , pp. C1090-C1111. Also Preprint ANL/MCS-P1414-0207, February 2007. [pdf]
R. Latham, R. Ross, and R. Thakur, "Implementing MPI-IO Atomic Mode and Shared File Pointers Using MPI One-sided Communication," Preprint ANL/MCS-P1388-0107, January 2007. [pdf]
R. J. Aiken, "The Grand Challenge of Managing the Petascale Facility," Argonne Report ANL/MCS-07/5, December 2006. [pdf]
W. Gropp and R. Thakur, "Thread Safety in an MPI Implementation: Requirements and Analysis," Preprint ANL/MCS-P1382-1206, December 2006. [pdf]
S. Pervez, G. Gopalakrishnan, R. M. Kirby, R. Thakur, and W. Gropp, "A Case Study in Using Formal Methods to Verify Programs That Use MPI One-Sided Communication," Preprint ANL/MCS-P1383-1206, December 2006. [pdf]
S. Dong, J. Insley, N. T. Karonis, M.E.Papka, J.Binns, and G.Karniadakis, "Simulating and Visualizing the Human Arterial System on the TeraGrid," Future Generation Computing System, vol. 22, no. 8, , pp. 1011-1017. Also Preprint ANL/MCS-P1344-0506, October 2006. [pdf]
P. Balaji, D. Buntinas, S. Balay, B. Smith, R. Thakur, and W. Gropp, "Nonuniformly Communicating Noncontiguous Data: A Case Study with PETSc and MPI," Preprint ANL/MCS-P1380-1006, October 2006. [pdf]
J. Shin and P. D. Hovland, "Comparison of Two Activity Analyses for Automatic Differentiation: Context-Sensitive Flow-Insensitive vs. Context-Insensitive Flow-Sensitive," Preprint ANL/MCS-P1369-0906, September 2006. [pdf]
V. Nefedova, R. Jacob, I. Foster, Z. Liu, Y. Liu, E. Deelman, G. Mehta, M.-H. Su, and K. Vahi, "Automating Climate Science: Large Ensemble Simulations on the TeraGrid with the GriPhyN Virtual Data System," Preprint ANL/MCS-P1373-0906, September 2006. [pdf]
B. Q. Deng, J. P. Allain, and L. L. Peng, "Effects of a Liquid Lithium Curtain as the Frist Wall in the Fuson Experimental Breeder (FEB-E) Reactor Plasma," Preprint ANL/MCS-P1375-0906, September 2006. [pdf]
B. Q. Deng, J. P. Allain, Z. M. Luo, L. L. Peng, and J. C. Yan, "Near-Surface Bipartition Model for the Study of Material Response of Plasma-Facing Surfaces Exposed to Energetic Charged Particles," Preprint ANL/MCS-P1376-0906, September 2006. [pdf]
J. P. Allain, M. D. Coventry, and D. N. Ruzic, "Kinematic and Thermodynamic Effects on Liquid Lithium Sputtering," Preprint ANL/MCS-P1377-0906, September 2006. [pdf]
D. Buntinas, G. Mercier and W. Gropp, "Implementation and Shared-Memory Evaluation of MPICH2 over the Nemesis Communication Subsystem," Recent Advances in Parallel Virtual Machine and Message Passing Interface, Bonn, Germany, Springer, , pp. 86-95. Also Preprint ANL/MCS-P1346-0506, September 2006. [pdf]
G. von Laszewski, J. DiCarlo, B. Allcock, "A Portal for Visualizing Grid Usage," Preprint ANL/MCS-P1362-0806, August 2006. [pdf]
B. Norris, S. Bhowmick, D. Kaushik, L. C. McInnes, "Middleware for Dynamic Adaptation of Component Applications," Preprint ANL/MCS-P1365-0806, August 2006. [pdf]
B. Lang, I. Foster, F. Siebenlist, R. Ananthakrishnan, T. Freeman, "Attribute Based Access Control for Grid Comptuing," Preprint ANL/MCS-P1367-0806, August 2006. [pdf]
N. Desai, R. Bradshaw, J. Hagedorn, C. Lueninghoener, "Directing Change Using Bcfg2,," Preprint ANL/MCS-P1368-0906, August 2006. [pdf]
R. E. Camley, G. Leaf, H. Kaper, M. Yan, and M. Grimsditch, "Phase Transitions and Reversal Mechanisms in Nanosized Magnetic Bars: The Influence of Bulk and Localized Spin Wave Modes," Preprint ANL/MCS-P1359-0706, July 2006. [pdf]
W. van Drongelen, H. C. Lee, R. L. Stevens, M. Hereld, "Propagation of Seizurelike Activity in a Model of Neocortex," Preprint ANL/MCS-P1363-0706, July 2006. [pdf]
Z. Insepov, A. Hassanein, and D. Swenson, "Computer Simulation of Surface Modification with Ion Beams," Preprint ANL/MCS-P1364-0706, July 2006. [pdf]
M. Yan, G. Leaf, H. Kaper, V. Novosad, P. Vavassori, R. E. Camley, M. Grimsditch, "Dynamic Origin of Stripe Domains in Cobalt Bars," Preprint ANL/MCS-P1353-0606, June 2006. [pdf]
J. Bresnahan, R. Kettimuthu, I. Foster, "XIOPerf: A Tool for Evaluating Network Protocols," Preprint ANL/MCS-P1354-0606, June 2006. [pdf]
Y. Zhao, M. Wilde, and I. Foster, "Applying the Virtual Data Provenance Model," Preprint ANL/MCS-P1355-0606, June 2006. [pdf]
M. Yan, G. Leaf, H. Kaper, V. Novosad, P. Vavassori, R. E. Camley, and M. Grimsditch, "Formation of Stripe Domains in Cobalt Bars via Magnetic Soft Mode Instability," Preprint ANL/MCS-P1356-0606, June 2006. [pdf]
J. M. Schopf, L. Pearlman, N. Miller, C. Kesselman, I. Foster, M. D, "Monitoring the Grid with the Globus Toolkit MDS4," Preprint ANL/MCS-P1357-0606, June 2006. [pdf]
S. Byna, X.-H. Sun, R. Thakur, and W. Gropp,, "Automatic Memory Optimizations for Improving MPI Derived Datatype Performance," Preprint ANL/MCS-P1358-0606, June 2006. [pdf]
P. Beckman, K. Iskra, K. Yoshii, and S. Coghlan, "The Influence of Operating Systems on the Performance of Collective Operations at Extreme Scale," Preprint ANL/MCS-P1345-0506, May 2006. [pdf]
W. Gropp and R. Thakur,, "Issues in Developing a Thread-Safe MPI Implementation," Preprint ANL/MCS-P1347-0506, May 2006. [pdf]
R. Latham, R. Ross, and R. Thakur, "Can MPI Be Used for Persistent Parallel Services?," Preprint ANL/MCS-P1348-0506, May 2006. [pdf]
S. Pervez, G. Gopalakrishnan, R. M. Kirby, R. Thakur, W. Gropp, "Formal Verification of Programs That Use MPI One-Sided Communication," Preprint ANL/MCS-P1350-0506, May 2006. [pdf]
T. Lee and P. F. Fischer, "A Lattice Boltzmann Equation Method without Parasitic Currents and Its Application in Droplet Coalescence," Preprint ANL/MCS-P1351-0506, May 2006. [pdf]
M. Nieto, J. P. Allain, V. Titov, M. R. Hendricks, A. Hassanein, D. Rokusek, C. Chrobak, C. Tarrio, Y. Barad, S. Grantham, T. Lucatorto, and B. Rice, "Effect of Xenon Bombardment on Ruthenium-Coated Grazing Incidence Collector Mirror Lifetime for EUV Lithography," Preprint ANL/MCS-P1338-0406, April 2006. [pdf]
S. Langella, S. Oster, S. Hastings, F. Siebenlist, T. Kurc, and J. Saltz, "Dorian: Grid Service Infrastructure for Identity Management and Federation," Preprint ANL/MCS-P1339-0406, April 2006. [pdf]
I. Constandache, D. Olmedilla, F. Siebenlist, W. Nejdl, "Policy-driven Negotiation for Authorization in the Grid," Preprint ANL/MCS-P1341-0406, April 2006. [pdf]
W. D. Gropp and A. Lumsdaine, "Parallel Tools and Environments: A Survey," Preprint ANL/MCS-P1342-0406, April 2006. [pdf]
J. Binns, J. DiCarlo, J. A. Insley, T. Leggett, C. Lueninghoener, J.-P. Navarro, and M. E. Papka, "Enabling Community Access to TeraGrid Visualization Resources, Concurrency and Computation: Practice and Experience," Concurr. Comput.-Pract. Exp., vol. 19, no. 6, , pp. 783 - 794. Also Preprint ANL/MCS-P1334-0306, March 2006. [pdf]
E. M. Glass, M. D, "Pathos and PathoGene Databases - Support for Biodefense and Emerging Infectious Disease Research," Preprint ANL/MCS-P1329-0306, March 2006. [pdf]
D. Sulakhe, M. D, "GNARE - A Grid-Based Server for the Analysis of User Submitted Genomes," Preprint ANL/MCS-P1330-0306, March 2006. [pdf]
T. Freeman, K. Keahey, B. Sotomayor, X. Zhang, I. Foster, and D. Scheftner, "Virtual Clusters for Grid Communities," Preprint ANL/MCS-P1331-0306, March 2006. [pdf]
M. Yan, G. Leaf, H. Kaper, V. Novosad, P. Vavassori, R. E. Camley, and M. Grimsditch, "Stripe Domains, Dynamic Modes, and Magnetic Phase Transitions," Preprint ANL/MCS-P1333-0306, March 2006. [pdf]
T. Lee and P. Fischer, "Eliminating Parasitic Currents in the Lattice Boltzmann Equation Method for Nonideal Gases," Preprint ANL/MCS-P1335-0306, March 2006. [pdf]
P. F. Fischer, F. Loth, S. E. Lee, S.-W. Lee, D. S. Smith, H. S. Bassiouny, "Simulation of High Reynolds Number Vascular Flows," Preprint ANL/MCS-P1337-0306, March 2006. [pdf]
R. Judson, S. Lefvert, E. Olson, T. D. Uram, "Virtual Venue Management Users Manual: Access Grid Toolkit Documentation, Version 2.3," Technical Memorandum ANL/MCS-TM-287, February 2006. [pdf]
M. Hereld, M. E. Papka, J. Binns, and R. L. Stevens, "CupHolder: A Multi-Person Interactive High-Resolution Workstation," Preprint ANL/MCS-P1322-0206, February 2006. [pdf]
V. Sizyuk, A. Hassanein, V. Morozov, and T. Sizyuk, "Heights Integrated Model as Instrument for Simulation of Hydrodynamic, Radiation Transport, and Heat Conduction Phenomena of Laser-Produced Plasma in EUV Applications," Argonne Report ANL-MCS-CPH-06/56, February 2006. [pdf]
S. Leyffer, "Complementarity Constraints as Nonlinear Equations: Theory and Numerical Experience," Preprint ANL/MCS-P1320-0206, February 2006. [pdf]
Darius Buntinas, Guillaume Mercier, and William Gropp, "Data Transfers Between Processes in an SMP System: Performance Study and Application to MPI," Preprint ANL/MCS-P1306-1105, November 2005. [pdf]
D. Buntinas, G. Mercier, and W. Gropp, "Design and Evaluation of Nemesis, a Scalable, Low-Latency, Message-Passing Communication Subsystem," Proceedings of the 6th IEEE International Symposium on Cluster Computing and the Grid, Singapore, Singapore, IEEE Computer Society, . Also Technical Memorandum ANL/MCS-TM-292, November 2005. [pdf][view online]
M. Anitescu, D. Negrut, P. Zapol, A. El-Azab, "A Note on the Regularity of Reduced Models Obtained by Quasi-continuum-like Approaches," Preprint ANL/MCS-P1303-1105, November 2005. [pdf]
J. Lee, R. Ross, S. Atchley, M. Beck, R. Thakur, "MPI-IO/L: Efficient Remote I/O for MPI-IO via Logistical Networking," Preprint ANL/MCS-P1304-1105, November 2005. [pdf]
L. Meyer, J. Annis, M. Wilde, M. Mattoso, and I. Foster, "Planning Spatial Workflows to Optimize Grid Performance," Preprint ANL/MCS-P1308-1105, November 2005. [pdf]
S. S. Varghese, S. H. Frankel, P. F. Fischer, "Direct Numerical Simulation of Stenotic Flows. Part 1. Steady Flow," Preprint ANL/MCS-P1309-1105, November 2005. [pdf]
S. S. Varghese, S. H. Frankel, P. D. Fischer, "Direct Numerical Simulation of Stenotic Flows. Part 2. Pulsatile Flow," Preprint ANL/MCS-P1310-1105, November 2005. [pdf]
E. M. Gertz and J. D. Griffin, "Support Vector Machine Classifiers for Large Data Sets," Technical Memorandum ANL/MCS-TM-289, October 2005. [pdf]
M. Yan, G. Leaf, H. Kaper, R. Camley, and M. Grimsditch, "Spin Wave Modes in a Cobalt Square Vortex," Preprint ANL/MCS-P1293-1005, October 2005. [pdf]
X. Zhang, J. L. Freschl, and J. M. Schopf, "Scalability Analysis of Three Monitoring and Information Systems: MDS2, R-GMA, and Hawkeye," Preprint ANL/MCS-P1294-1005,, October 2005. [pdf]
M. G. Knepley and D. A. Karpeev, "Flexible Representation of Computational Meshes," Preprint ANL/MCS-P1295-1005, October 2005. [pdf]
N. Maltsev, E. Glass, D. Sulakhe, A. Rodriguez, M. H. Syed, T. Bompada, Y. Zhang, and M. D, "PUMA2 - Grid-Based High-Throughput Analysis of Genomes and Metabolic Pathway," Preprint ANL/MCS-P1296-1005, October 2005. [pdf]
D. Buntinas and W. Gropp, "Understanding the Requirements Imposed by Programming Model Middleware on a Common Communication Subsystem," Technical Memorandum ANL/MCS-TM-277, September 2005. [pdf][view online]
K. Amin, G. von Laszewski, M. Sosonkin, A. R. Mikler, and M. Hategan, "Ad Hoc Grid Security Infrastructure," Preprint ANL/MCS-P1286-0905, September 2005.
R. Padmanabhan, W. McCune, and R. Veroff, "Lattice Laws Forcing Distributivity Under Unique Complementation," Preprint ANL/MCS-P1287-0905, September 2005. [pdf]
N.Desai, R.Bradshaw, S.Matott, S.Bittner, S.Coghlan, R.Evard, C.Lueninghoener, T.Leggett, J.-P.Navarro, G.Rackow, C.Stacey, T. Stacey, "A Case Study in Configuration Management Tool Deployment," Preprint ANL/MCS-P1288-0905, September 2005. [pdf]
I. Foster, V. Nefedova, L. Liming, R. Ananthakrishnan, R. Madduri, L. Pearlman, O. Mulmo, M. Ahsant, "Streamlining Grid Operations: Definition and Deployment of a Portal-based User Registration Service," Preprint ANL/MCS-P1291-0905, September 2005. [pdf]
S. J. Benson, "Parallel Semidefinite Programming and Combinatorial Optimization," Preprint ANL/MCS-P1292-0905, September 2005. [pdf]
S. Leyffer, "The Return of the Active Set Method," Preprint ANL/MCS-P1277-0805, August 2005. [pdf]
D. Negrut, R. Rampalli, G. Ottarsson, A. Sajdak, "On the use of the HHT Method in the Context of Index 3 Differential Algebraic Equations of Multibody Dynamics," Preprint ANL/MCS-P1278-0805, August 2005. [pdf]
S. Bhowmick, D. Kaushik, L. McInnes, B. Norris, P. Raghavan, "Parallel Adaptive Solvers in Compressible PETSc-FUN3D Simulations," Preprint ANL/MCS-P1279-0805, August 2005. [pdf]
D. Negrut, M. Anitescu, T. Munson, and P. Zapol, "Simulating Nanoscale Processes in Solids using DFT and the Quasicontinuum Method," Preprint ANL/MCS-P1280-0805, August 2005. [pdf]
L. Yang, J. M. Schopf, C. L. Dumitrescu, and I. Foster, "Statistical Data Reduction for Efficient Application Performance Monitoring," Preprint ANL/MCS-P1281-0805, August 2005. [pdf]
J. G. Kim, E. C. Hunke, and W. H. Lipscomb, "A Sensitivity Analysis and Parameter Tuning Scheme for Global Sea Ice Modeling," Preprint ANL/MCS-P1282-0805, August 2005. [pdf]
L. McInnes, B. Norris, I. Veljkovic, "Computational Quality of Service in Parallel CFD," Preprint ANL/MCS-P1283-0805, August 2005. [pdf]
T. S. Munson and P. D. Hovland, "The FeasNewt Benchmark," Preprint ANL/MCS-P1284-0805, August 2005. [pdf]
D. Buntinas and W. Gropp, "Understanding the Requirements Imposed by Programming Model Middleware on a Common Communication Subsystem," Technical Memorandum ANL/MCS-TM-284, July 2005. [pdf]
D. Buntinas and W. Gropp, "Designing a Common Communication Subsystem," Preprint ANL/MMCS-P1270-0705, July 2005. [pdf]
R. Latham, R. Ross, R. Thakur, B. Toonen, "Implementing MPI-IO Shared File Pointers without File System Support," Preprint ANL/MCS-P1272-0705, July 2005. [pdf]
B. Allcock, A. Chervenak, I. Foster, C. Kesselman, M. Livny, "Data Grid Tools: Enabling Science on Big Distributed Data," Preprint ANL/MCS-P1274-0705, July 2005. [pdf]
W. Allcock, J. Bresnahan, R. Kattimuthu, M. Link, C. Dumitrescu, I. Raicu, I. Foster, "The Globus Striped GridFTP Framework and Server," Preprint ANL/MCS-P1275-0705, July 2005. [pdf]
B. Norris, "Software Architecture Issues in Scientific Component Development," Preprint ANL/MCS-P1276-0705, July 2005. [pdf]
W. E. Allcock, "Programming with the Globus Toolkit GridFTP Client Library," Preprint ANL/MCS-P1285-0705, July 2005. [pdf]
M. M. Strout, J. Mellor-Crummey, P. Hovland, "Representation-Independent Program Analysis," Preprint ANL/MCS-P1255-0605, June 2005. [pdf]
G. von Laszewski and D. Kodeboyina, "A Repository Service for Grid Workflow Components," Preprint ANL/MCS-P1256-0605, June 2005. [pdf]
K. Amin and G. von Laszewski, "Quality Assured Ad Hoc Grids," Preprint ANL/MCS-P1257-0605, June 2005. [pdf]
D. E. Stewart and M. Anitescu, "Optimal Control of Systems with Discontinuous Differential Equations," Preprint ANL/MCS-P1258-0605, June 2005. [pdf]
T. Munson, "Optimizing the Quality of Mesh Elements," Preprint ANL/MCS-P1260-0605, June 2005. [pdf]
P. D. Hovland, B. Norris, M. M. Strout, S. Bhowmick, and J. Utke, "Sensitivity Analysis and Design Optimization through Automatic Differentiation," Preprint ANL/MCS-P1264-0605, June 2005. [pdf]
L. Wos and M. Spinks, "The Arrival of Automated Reasoning," Preprint ANL/MCS-P1265-0605, June 2005. [pdf]
W. Gropp and R. Thakur, "An Evaluation of Implementation Options for MPI One-Sided Communication," Preprint ANL/MCS-P1266-0605, June 2005. [pdf]
G. von Laszewski, "The Grid-Idea and Its Evolution," Preprint ANL/MCS-P1253-0505, May 2005. [pdf]
S. Leyffer and T. Munson, "Solving Multi-Leader-Follower Games," Preprint ANL/MCS-P1243-0405, April 2005. [pdf]
M. Anitescu, "Mathematical Programs with Equilibrium Constraints and Applications to Control," Preprint ANL/MCS-P1247-0405, April 2005. [pdf]
I. Foster, "Service-Oriented Science," Preprint ANL/MCS-P1249-0405, April 2005. [pdf]
K. Amin, G. von Laszewski, M. Hategan, R. Al-Ali, O. Rana, D. Walker, "An Abstraction Model for a Grid Execution Framework," Preprint ANL/MCS-P1250-0405, April 2005. [pdf]
L. Yang, J. M. Schopf, and I. Foster,, "Improving Parallel Data Transfer Times Using Predicted Variances in Shared Networks," Preprint ANL/MCS-P1234-0305, March 2005. [pdf]
R. Ross, R. Latham, W. Gropp, R. Thakur, B. Toonen, "Implementing MPI-IO Atomic Mode Without File System Support," Preprint ANL/MCS-P1235-0305, March 2005. [pdf]
H. G. Kaper and S. Tipei, "DISSCO: A Unified Approach to Sound Synthesis and Composition," Preprint ANL/MCS-P1236-0305, March 2005. [pdf]
M. Hereld and R. L. Stevens, "Pixel-Aligned Warping for Multi-Projector Tiled Displays," Preprint ANL/MCS-P1237-0305, March 2005. [pdf]
T. Disz, M. Kubal, R. Olson, R. Overbeek, R. Stevens, "Challenges in Large Scale Distributed Computing: Bioinformatics," Preprint ANL/MCS-P1238-0305, March 2005. [pdf]
L. F. Diachin, P. Knupp, T. Munson, and S. Shontz, "A Comparison of Two Optimization Methods for Mesh Quality Improvement," Preprint ANL/MCS-P1239-0305, March 2005. [pdf]
A. P. Craig, R. L. Jacob, B. Kauffman, T. Bettge, J. Larson, E. Ong, C. Ding, Y. He, "Cp16: The New Extensible, High-Performance Parallel Coupler for the Community Climate System Model," Preprint ANL/MCS-P1222-0205, February 2005. [pdf]
A. Zagaris, H. G. Kaper, T. J. Kaper, "Two Perspectives on Reduction of Ordinary Differential Equations," Preprint ANL/MCS-P1223-0205, February 2005. [pdf]
R. Jacob, J. Larson, and E. Ong, "MxN Communication and Parallel Interpolation in CCSM3 Using the Model Coupling Toolkit," Preprint ANL/MCS-P1225-0205, February 2005. [pdf]
U. Naumann and J. Utke, "Source Templates for the Automatic Generation of Adjoint Code through Static Call Graph Reversal," Preprint ANL/MCS-P1226-0205, February 2005. [pdf]
K. Keahey, I. Foster, T. Freeman, X. Zhang, and D. Galron, "Virtual Workspaces in the Grid," Preprint ANL/MCS-P1231-0205, February 2005. [pdf]
R. Thakur, W. Gropp, B. Toonen, "Optimizing the Synchronization Operations in MPI One-Sided Communication," Preprint ANL/MCS-P1232-0205, February 2005. [pdf]
M. Min, "Disctoninuous Galerkin Method Based on Quadrilateral Mesh for Maxwell's Equations," Preprint ANL/MCS-P1233-0205, February 2005. [pdf]
M. M. Strout, B. Kreaseck, and P. Hovland, "Data-Flow Analysis for MPI Programs," Preprint ANL/MCS-P1220-0105, January 2005. [pdf]
B. Norris and I. Veljkovic, "Performance Monitoring and Analysis Components in Adaptive PDE-Based Simulations," Preprint ANL/MCS-P1221-0105, January 2005. [pdf]
G. von Laszewski and M. Sosonkin, "A Grid Certificate Authority for Community and Ad-hoc Grids," Preprint ANL/MCS-P1216-0105, January 2005. [pdf]
P. F. Fischer and C. P. Tzanos, "Filtered Simulations of Turbulence in a Reactor Rod Bundle Flow," Preprint ANL/MCS-P1213-0105, January 2005. [pdf]
J. N. Lyness and T. Sorevik, "Five-Dimensional K-Optimal Lattice Rules," Preprint ANL/MCS-P1244-0105, January 2005. [pdf]
R. Kettimuthu, V. Subramani, S. Srinivasan, T. Gopalsamy, D. K. Panda, and P. Sadayappan, "Selective Preemption Strategies for Parallel Job Scheduling," Preprint ANL/MCS-P1209-1204, December 2004. [pdf]
S. Leyffer, G. Lopez-Calva, and J. Nocedal, "Interior Methods for Mathematical Programs with Complementarity Constraints," Preprint ANL/MCS-P1211-1204, December 2004. [pdf]
P. F. Fischer, G. K. Leaf, and J. M. Restrepo, "Influence of Wall Proximity on the Lift and Drag of a Particle in an Oscillatory Flow," Preprint ANL/MCS-P1212-1204, December 2004. [pdf]
P. H. Beckman, "Building the TeraGrid," Preprint ANL/MCS-P1206-1104, November 2004. [pdf]
J. M. Schopf and S. J. Newhouse, "State of Grid Users: 25 Conversations with UK eScience Groups," Technical Memorandum ANL/MCS-TM-278, October 2004. [pdf]
S. Son, B. Allcock, and M. Livny, "CODO: Firewall Traversal by Cooperative On-Demand Opening," Preprint ANL/MCS-P1200-1004, October 2004. [pdf]
K. Keahey, M. E. Papka, Q. Peng, D. Schissel, G. Abla, T. Araki, J. Burruss, E. Feibush, P. Lane, S. Klasky, T. Leggett, D. McCune, L. Randerson, "Grid Support for Collaborative Control Room in Fusion Science," Preprint ANL/MCS-P1201-1004, October 2004. [pdf]
M. S. Min, T. W. Lee, P. F. Fischer, and S.K. Gray, "Fourier Spectral Simulations and Gegenbauer Reconstructions for Electromagnetic Waves in the Presence of a Metal Nanoparticle," Preprint ANL/MCS-P1202-1004, October 2004. [pdf]
K. Amin, G. von Laszewski, A. R. Mikler, "Toward an Architecture for Ad Hoc Grids," Preprint ANL/MCS-P1204-1004, October 2004. [pdf]
E. D. Frank and R. L. Stevens, "Process Modeling for High-Throughput Biology," Preprint ANL/MCS-TM-276, October 2004. [pdf]
U. Naumann and J. Utke, "Optimality-Preserving Elimination of Linearities in Jacobian Accumulation," Preprint ANL/MCS-P1194-0904, September 2004. [pdf]
J. Utke, "Flattening Basic Blocks," Preprint ANL/MCS-P1196-0904, September 2004. [pdf]
N. Maltsev, E. M. Glass, G. Ovchinnikova, and Z. Gu, "Molecular Mechanisms Involved in Robustness of Yeast Central Metabolism Against Null Mutations," Preprint ANL/MCS-P1198-0904, September 2004. [pdf]
Y. K. Kuan, P. F. Fischer, F. Loth, "Surface Reconstruction of In Vivo Geometry Base on Medical Images using Multilevel Radial Basis Functions," Preprint ANL/MCS-P1210-0904, September 2004. [pdf]
Y. Zhao, M. Wilde, I. Foster, J. Voeckler, T. Jordan, E. Quigg, and J. Dobson, "Grid Middleware Services for Virtual Data Discovery, Composition, and Integration," Preprint ANL/MCS-P1195-0904, September 2004. [pdf]
R. Padmanabhan, W. McCune, "Tarski Theorems on Self-Dual Equational Bases for Groups," Preprint ANL/MCS-P1092-0903, August 2004. [pdf]
B. Addis and S. Leyffer, "A Trust-Region Algorithm for Global Optimization," Preprint ANL/MCS-P1190-0804, August 2004. [pdf]
Y. Chen, B. F. Hobbs, S. Leyffer, and T. S. Munson, "Leader-Follower Equilibria for Electric Power and NOx Allowances Markets," Preprint ANL/MCS-P1191-0804, August 2004. [pdf]
W. D. Gropp, "Issues in Accurate and Reliable Use of Parallel Computing in Numerical Programs," Preprint ANL/MCS-P1193-0804, August 2004. [pdf]
iachin, M. Krishnan, J. A. Kohl, J. W. Larson, S. Lefantzi, J. Nieplocha, B. Norris, S. G. Parker, J. Ray, and S. Zhou, "Parallel PDE-Based Simulations Using the Common Component Architecture," Preprint ANL/MCS-P1179-0704, July 2004. [pdf]
G. G. Maisuradze, A. Kawano, D. L. Thompson, A. F. Wagner, and M. Minkoff, "Interpolating Moving Least-Squares Methods for Fitting Potential Energy Surfaces: Analysis of an Application to a Six-Dimensional System," Preprint ANL/MCS-P1187-0704, July 2004. [pdf]
Y. Guo, A. Kawano, D. L. Thompson, A. F. Wagner, and M. Minkoff, "Interpolating Moving Least-Squares Methods for Fitting Potential Energy Surfaces: Applications to Classical Dynamics Calculations," Preprint ANL/MCS-P1188-0704, July 2004. [pdf]
T. Araki, "Autonomic WWW Server Management with Distributed Resources," Preprint ANL/MCS-P1185-0704, July 2004. [pdf]
W. E. Allcock, I. Foster, R. Madduri, "Reliable Data Transport: A Critical Service for the Grid," Preprint ANL/MCS-P1166-0604, June 2004. [pdf]
M. M. Strout and P. D. Hovland, "Metrics and Models for Reordering Transformations," Preprint ANL/MCS-P1167-0604, June 2004. [pdf]
R. Kettimuthu and W. Allcock, "Improved Selective Acknowledgment Scheme for TCP," Preprint ANL/MCS-P1168-0604, June 2004. [pdf]
R. Overbeek, T. Disz, and R. Stevens, "A Peer-to-Peer Environment for Annotation of Genomes: The SEED," Preprint ANL/MCS-P1169-0604, June 2004. [pdf]
C. E. Frouzakis, A. G. Tomboulides, P. Papas, P. F. Fischer, R. M. Rais, P. A. Monkewitz, and K. Boulouchos, , "Three-Dimensional Numerical Simulations of Cellular Jet Diffusion Flames," Proc. 30th International Symposium on Combustion, Chicago, July 25-30, . Also Preprint ANL/MCS-P1173-0604, June 2004. [pdf]
S. J. Benson, L. McInnes, J. J. More', and J. Sarich, "Scalable Algorithms in Optimization: Computational Experiments," Preprint ANL/.MCS-P1175-0604, June 2004. [pdf]
J. Lee, X. Ma, R. Ross, R. Thakur, M. Winslett,, "RFS: Efficient and Flexible Remote File Access for MPI-IO," Preprint ANl/MCS-P1176-0604, June 2004. [pdf]
W. Yu, D. Buntinas, and D. K. Panda, "Scalable and High Performance NIC-Based All-to-All Broadcast Over Myrinet/GM," Preprint ANL/MCS-P1177-0604, June 2004. [pdf]
W. Gropp, R. Ross, and N. Miller, "Providing Efficient I/O Redundancy in MPI Environments," Preprint ANL/MCS-P1178-0604, June 2004. [pdf]
R. Latham, R. Ross, and R. Thakur, "The Impact of File Systems on MPI-IO Scalability," Preprint ANL/MCS-P1182-0604, June 2004. [pdf]
G. Almasi, C. Archer, J. G. Castanos, J. Gunnels, C. C. Erway, P. Heidelberger, X. Martorell, J. E. Moreira, K. Pinnow, J. Ratterman, B. Steinmacher-burow, W. Gropp, B. Toonen, "The Design and Implementation of Message Passing Services for the BlueGene/L Supercomputer," Preprint ANL/MCS-P1183-0604, June 2004. [pdf]
R. Thakur, W. Gropp, and B. Toonen, "Minimizing Synchronization Overhead in the Implementation of MPI One-Sided Communication," Preprint ANL/MCS-P1158-0504, May 2004. [pdf]
L. F. Diachin, P. Knupp, T. Munson, and S. Shontz, "A Comparison of Inexact Newton and Coordinate Descent Mesh Optimization Techniques," Preprint ANL/MCS-P1159-0504, May 2004. [pdf]
M. Anitescu, "Optimization-Based Simulation of Nonsmooth Rigid Multibody Dynamics," Preprint ANL/MCS-P1161-0504, May 2004. [pdf]
F. A. Potra, M. Anitescu, B. Gavrea, and J. Trinkle, "A Linearly Implicit Trapezoidal Method for Integrating Stiff Multibody Dynamics with Contact, Joints, and Friction," Preprint ANL/MCS-P1162-0504, May 2004. [pdf]
W. Jiang, J. Liu, H.-W. Jin, D. K. Panda, D. Buntinas, R. Thakur, W. Gropp, "Efficient Implementation of MPI-2 Passive One-Sided Communication on InfiniBand Clusters," Preprint ANL/MCS-P1164-0504, May 2004. [pdf]
J. Utke, "OpenAD: Algorithm Implementation User Guide," Technical Memorandum ANL/MCS-TM-274, April 2004. [pdf]
M. Anitescu, "Global Convergence of an Eleastic Mode Approach for a Class of Mathematical Programs with Complementarity Constraints," Preprint ANL/MCS-P1143-0404, April 2004. [pdf]
M. R. Paul, K-H. Chiam, M. C. Cross, and P. F. Fischer , "Rayleigh-Benard Convection in Large-Aspect-Ratio Domains," Preprint ANL/MCS-P1144-0404, April 2004. [pdf]
L. Wos, "Milestones for Automated Reasoning," Preprint ANL/MCS-P1146-0404, April 2004. [pdf]
N. T. Karonis, M. E. Papka, J. Binns, J. Bresnahan, J. M. Link, "Effective Use of Dedicated Wide-Area Networks for High-Performance Distributed Computing," Preprint ANL/MCS-P1151-0404, April 2004. [pdf]
C. H. Bischof, P. D. Hovland, and B. Norris, "On the Implementation of Automatic Differentiation Tools," Preprint ANL/MCS-P1152-0404, April 2004. [pdf]
S. L. Lee and P. D. Hovland, "Derivative Techniques for Forward Sensitivity Analysis in Time-Dependent Problems," Preprint ANL/MCS-P1153-0404, April 2004. [pdf]
J. Peng, M. Anitescu, and S. Akella, "Optimal Control of Multiple Robot Systems with Friction using MPCC," Preprint ANL/MCS-P1157-0404, April 2004. [pdf]
B. Norris, J. Ray, R. Armstrong, L. C. McInnes, D. E. Bernholt, W. R. Elwasif, A. D. Malony, S. Shende, "Computational Quality of Service for Scientific Components," Preprint ANL/MCS-P1131-0304, March 2004. [pdf]
T. Munson, "An Averaging Method for Nash Games with Shared Decision Variables," Preprint ANL/MCS-P1134-0304, March 2004. [pdf]
T. Munson, "Mesh Shape-Quality Optimization Using the Inverse Mean-Ratio Metric," Preprint ANL/MCS-P1136-0304, March 2004. [pdf]
R. Thakur, R. Rabenseifner, and W. Gropp, "Optimization of Collective Communication Operations in MPICH," Preprint ANL/MCS-P1140-0304, March 2004. [pdf]
K. Keahey, K. Doering, and I. Foster, "From Sandbox to Playground: Dynamic Virtual Environments in the Grid," Preprint ANL/MCS-P1141-0304, March 2004. [pdf]
P. M. Dickens and J. W. Larson, "Classifiers for the Causes of Data Loss Using Packet-Loss Signatures," Preprint ANL/MCS-P1123-0204, February 2004. [pdf]
R. Al-Ali, G. von Laszewski, K. Amin, M. Hategan, O. Rana, D. Walker, N. Zaluzec, "QoS Support for High-Performance Scientific Grid Applications," Preprint ANL/MCS-P1129-0204, February 2004. [pdf]
W. Allcock, J. Bresnahan, R. Kettimuthu, J. Link, "The Globus eXtensible Input/Output System (XIO): A Protocol Independent IO System for the Grid," Preprint ANL/MCS-P1130-0204, February 2004. [pdf]
V. Welch, I. Foster, C. Kesselman, O. Mulmo, L. Pearlman, S. Tuecke, J. Gawor, S. Meder, F. Siebenlist, "X.509 Proxy Certificates for Dynamic Delegation," Preprint ANL/MCS-P1132-0204, February 2004. [pdf]
E. D. Dolan, J. J. More', and T. S. Munson, "Benchmarking Optimization Software with COPS 3.0," Technical Memorandum ANL/MCS-TM-273, February 2004. [pdf]
X. Zhang and J. M. Schopf, "Performance Analysis of the Globus Toolkit Monitoring and Discovery Service," Preprint ANL/MCS-P1115-0104, January 2004. [pdf]
M. Grimsditch, L. Giovannini, F. Montoncello, F. Nizzoli, G. K. Leaf, H. G. Kaper, "Normal Modes in Ferromagnetic Nanoparticles: A Dynamical Matrix Approach," Preprint ANL/MCS-P1116-0104, January 2004. [pdf]
W. Jiang, J. Liu, H.-W. Jin, D. K. Panda, W. Gropp, and R. Thakur, "High Performance MPI-2 One-Sided Communication over InfiniBand," Preprint ANL/MCS-P1119-0104, January 2004. [pdf]
W. Yu, D. Buntinas, R. L. Graham, and D. K. Panda, "Efficient and Scalable Barrier over Quadrics and Myrinet with a New NIC-based Collective Message Passing Protocol," Preprint ANL/MCS-P1121-0204, January 2004. [pdf]
P. J. Moon, G. Sandi, D. Stevens, R. Kizilel, "Computational Modeling of Ionic Transport in Continuous and Batch Electrodialysis," Preprint ANL/MCS-P1111-1203, December 2003. [pdf]
B. K. Alunkal, I. Veljkovic, G. von Laszewski, and K. Amin, "Reputation-Based Grid Resource Selection," Preprint ANL/MCS-P1127-1203, December 2003. [pdf]
G. von Laszewski, B. K. Alundal, I. Veljkovic, "Toward Reputable Grids," Preprint ANL/MCS-P1128-1203, December 2003. [pdf]
S. Benson, L. C. McInnes, J. J. More', "TAO Users Manual," Technical Memorandum ANL/MCS-TM-242, November 2003. [pdf]
L. Randerson, J. Burruss, E. Feibush, S. Flanagan, K. Keahey, C. Ludescher, D. C. McCune, Q. Peng, D. P. Schissel, M. R. Thompson, "Building Application Services on the Grid: The National Fusion Collaboratory," Preprint ANL/MCS-P1104-1103, November 2003. [pdf]
K. Amin, G. von Laszewski, and A. R. Mikler, "Grid Computing for the Masses: An Overview," Preprint ANL/MCS-P1105-1103, November 2003. [pdf]
T. Ozgokmen, P. Fischer, J. Duan, and T. Iliescu, "Three-Dimensional Turbulent Bottom Density Currents from a High-Order Nonhydrostatic Spectral Element Model," Preprint ANL/MCS-P1106-1103, November 2003. [pdf]
R. Al-Ali, K. Amin, G. von Laszewski, O. Rana, and D. Walker, "An OGSA-Based Quality of Service Framework," Preprint ANL/MCS-P1108-1103, November 2003. [pdf]
R. Evard, P. Beckman, S. Bittner, R. Bradshaw, S. Coghlan, N. Desai, B. Finley, E. Rackow, J.-P. Navarro,, "The Production Cluster Construction Checklist," Technical Memorandum ANL/MCS-TM-267, October 2003. [pdf]
G. von Laszewski, K. Amin, M. Hategan, N. J. Zaluzec, S. Hampton, A. Rossi, "GridAnt: A Client-Controllable Grid Workflow System," Preprint ANL/MCS-P1098-1003, October 2003. [pdf]
G. D. Hart and M. Anitescu, "A Hard-Constraint Time-Stepping Approach for Rigid Multibody Dynamics with Joints, Contact, and Friction," Preprint ANL/MCS-P1099-1003, October 2003. [pdf]
K. Amin, M. Hategan, G. von Laszewski, N. J. Zaluzec, "Abstracting the Grid," Preprint ANL/MCS-P1101-1003, October 2003. [pdf]
J. Liu, W. Jiang, P. Wyckoff, D. K. Panda, D. Ashton, D. Buntinas, W. Gropp, B. Toonen,, "Design and Implementation of MPICH2 over InfiniBand with RDMA Support," Preprint ANL/MCS-P1103-1003, October 2003. [pdf]
A. A. Dunca,, "Optimal Design of Fluid Flow Using Subproblems Reduced by Large Eddy Simulation," Preprint ANL/MCS-P1117-1003, October 2003. [pdf]
W. McCune, R. Padmanabhan, M. A. Rose, R. Veroff, "Short Equational Bases for Ortholattices: Proofs and Countermodels," Technical Memorandum ANL/MCS-TM-265, September 2003.
U. Naumann and J. Utke, "Reduction of Edge Labeled DAGs through Constant Folding," Preprint ANL/MCS-P1073-0803, September 2003. [pdf]
S. Benson, M. Krishnan, L. McInnes, J. Nieplocha, J. Sarich, "Using the GA and TAO Toolkits for Solving Large-Scale Optimization Problems on Parallel Computers," Preprint ANL/MCS-P1084-0903, September 2003. [pdf]
A. Ching, A. Choudhary, K. Coloma, W.-K. Liao, R. Ross, W. Gropp, "Noncontiguous I/O Accesses Through MPI-IO," Preprint ANL/MCS-P1085-0903, September 2003. [pdf]
W. McCune, R. Padmanabhan, M. A. Rose, R. Veroff, "Short Equational Bases for Ortholattices," Preprint ANL/MCS-P1087-0903, September 2003. [pdf]
B.-D. Lee and J. M. Schopf, "Run-Time Prediction of Parallel Applications on Shared Environment," Preprint ANL/MCS-P1088-0903, September 2003. [pdf]
N. Desai, A. Lusk, R. Bradshaw, R. Evard, "BCFG: A Configuration Management Tool for Heterogeneous Environments," Preprint ANL/MCS-P1089-0903, September 2003. [pdf]
U. Naumann and J. Riehme, "A Differentiation-Enabled Fortran 95 Compiler," Preprint ANL/MCS-P1090-0903, September 2003. [pdf]
S. Leyffer, "The Penalty Interior-Point Method Fails to Converge," Preprint ANL/MCS-P1091-0903, September 2003. [pdf]
M. Anitescu, W. J. Layton, F. Pahlevani, "Unconditional Stability for Numerical Scheme Combining Implicit Timestepping for Local Effects and Explicit Timestepping for Nonlocal Effects," Preprint ANL/MCS-P1093-0903, September 2003. [pdf]
K. Keahey, V. Welch, S. Lang, B. Liu, and S. Meder, "Fine-Grained Authorization for Job Execution in the Grid: Design and Implementation," Preprint ANL/MCS-P1094-0903, September 2003. [pdf]
M. R. Thompson, A. Essiari, K. Keahey, V. Welch, S. Lang, B. Liu, "Fine-Grained Authorization for Job and Resource Management Using Akenti and the Globus Toolkit," Preprint ANL/MCS-P1095-0903, September 2003. [pdf]
K. Keahey, M. Ripeanu, K. Koering, "Dynamic Creation and Management of Runtime Environments in the Grid," Preprint ANL/MCS-P1096-0903, September 2003. [pdf]
P. Moon, G. Sandi, R. Kizilel, D. Stevens, "Computational Simulation of Lithium Ion Transport through Polymer Nanocomposite Membranes," Preprint ANL/MCS-P1107-0903, September 2003. [pdf]
W. McCune, "OTTER 3.3 Reference Manual," Technical Memorandum ANL/MCS-TM-263, August 2003. [pdf]
W. McCune, "Mace4 Reference Manual and Guide," Technical Memorandum ANL/MCS-TM-264, August 2003. [pdf]
M. Hereld, "Local Methods for Measuring Tiled Display Alignment," Preprint ANL/MCS-P1072-0803, August 2003. [pdf]
Y. Zhou, "Eigenvalue Computation from the Optimization Perspective: On Jacobi-Davidson, IIGD, RQI, and Newton Updates," Preprint ANL/MCS-P1074-0803, August 2003. [pdf]
I. Foster and C. Kesselman, "The Grid in a Nutshell," Preprint ANL/MCS-P1075-0803, August 2003. [pdf]
J. M. Schopf, "Ten Actions When Grid Scheduling," Preprint ANL/MCS-P1076-0803, August 2003. [pdf]
G. G. Maisuradze, D. L. Thompson, A. F. Wagner, M. Minkoff, "Interpolating Moving Least Squares Methods for Fitting Potential Energy Surfaces: Detailed Analysis of One-Dimensional Applications," Preprint ANL/MCS-P1083-0803, August 2003. [pdf]
U. Naumann and A. Walther, "An Introduction to Using Software Tools for Automatic Differentiation," Technical Memorandum ANL/MCS-TM-254, July 2003. [pdf]
L. Yang, J. M. Schopf, and I. Foster,, "Conservative Scheduling: Using Predicted Variance to Improve Scheduling Decisions in Dynamic Environments," Preprint ANL/MCS-P1069-0703, July 2003. [pdf]
J. J. Evans, C. S. Hood, W. D. Gropp, "Exploring the Relationship Between Parallel Application Run-Time Variability and Network Performance in Clusters," Preprint ANL/MCS-P1071-0703, July 2003. [pdf]
U. Naumann and P. Heimbach, "Coupling Tangent-Linear and Adjoint Models," Preprint ANL/MCS-P1022-0203, June 2003. [pdf]
K. Keahey, V. Welch, S. Lang, B. Liu, S. Meder, "Fine-Grain Authorization Policies in the GRID: Design and Implementation," Preprint ANL/MCS-P1053-0603, June 2003. [pdf]
L. Pearlman, C. Kesselman, V. Welch, I. Foster, S. Tuecke, "The Community Authorization Service: Status and Future," Preprint ANL/MCS-P1056-0603, June 2003. [pdf]
M. R. Paul, K.-H. Chiam, M. C. Cross, P. F. Fischer, and H. S. Greenside, "Pattern Formation and Dynamics in Rayleigh-Benard Convection: Numerical Simulations of Experimentally Realistic Geomtries," Preprint ANL/MCS-P1057-0603, June 2003. [pdf]
O. F. Rana, A. Shaikhali, and G. von Laszewski, "Creating and Managing Grid Services," Preprint ANL/MCS-P1058-0603, June 2003. [pdf]
R. Stevens, M. E. Papka, T. Disz, "The Access Grid: Prototyping - Workspaces of the Future," Preprint ANL/MCS-P1064-0603, June 2003. [pdf]
U. Naumann, "Statement-Level Optimality of Tangent-Linear and Adjoint Models," Preprint ANL/MCS-P1066-0603, June 2003. [pdf]
K. Keahey and K. Motawi, "The Taming of the Grid: Virtual Application Services," Technical Memorandum ANL/MCS-TM-262, May 2003. [pdf]
M. Cohen, U. Naumann, J. Riehme, "Towards Differentiation-Enabled Fortran 95 Compiler Technology," Preprint ANL/MCS-P935-0202, May 2003. [pdf]
J. Li, W.-K. Liao, A. Choudhary, R. Ross, R. Thakur, W. Gropp, R. Latham, "Parallel netCDF: A Scientific High-Performance I/O Interface," Preprint ANL/MCS-P1048-0503, May 2003. [pdf]
M. Grimsditch, G. K. Leaf, H. G. Kaper, D. A. Karpeev, R. E. Camley, "Normal Modes of Spin Excitations in Magnetic Nano-Particles," Preprint ANL/MCS-P1049-0503, May 2003. [pdf]
U. Naumann, "Optimal Accumulation of Jacobian Matrices by Elimination Methods on the Dual Computational Graph," Preprint ANL/MCS-P943-0402, April 2003. [pdf][view online]
J. No, R. Thakur, A. Choudhary, "High-Performance Scientific Data Management System," Preprint ANL/MCS-P973-0502, April 2003.
X. Zhang, J. Freschl, and J. M. Schopf, "A Performance Study of Monitoring and Information Services for Distribution Systems," Preprint ANL/MCS-P1040-0403, April 2003. [pdf]
I. Lee, P. Raghavan, S. Schofield and P. Fischer, "An O(n log n) Solution Algorithm for Spectral Element Methods," Preprint ANL/MCS-P1041-0403, April 2003. [pdf]
S. Byna, W. Gropp, X.-H. Sun, R. Thakur,, "Improving the Performance of MPI Derived Datatypes by Optimizing Memory-Access Cost," Preprint ANL/MCS-P1045-0403, April 2003. [pdf]
S. Anand, S. Yoginath, G. von Laszewski, B. Alunkal, X.-H. Sun, "Flow-based Multistage Co-allocation Service," Preprint ANL/MCS-P1046-0403, April 2003. [pdf]
G. von Laszewski, B. Alunkal, J. Gawor, R. Madduri, P. Plaszczak, X.-H. Sun, "A File Transfer Component for Grids," Preprint ANL/MCS-P1047-0403, April 2003. [pdf]
K. Keahey, T. Araki, and P. Lane, "Agreement-Based Interactions for Experimental Science," Preprint ANL/MCS-P1142-0304, March 2003. [pdf]
S. Vazhkudai and J. M. Schopf, "Using Regression Techniques to Predict Large Data Transfers," Preprint ANL/MCS-P1033-0303, March 2003. [pdf]
M. Anitescu, "A Fixed Time-Step Approach for Multibody Dynamics with Contact and Friction," Preprint ANL/MCS-P1034-0303, March 2003. [pdf]
A. Grimshaw and S. Tuecke, "Grid Services Extend Web Services," Preprint ANL/MCS-P1036-0303, March 2003. [pdf]
L. A. Freitag and R. M. Loy, "Theoretical Cost Comparison of Remote Visualization Strategies," Preprint ANL/MCS-P1037-0303, March 2003. [pdf]
V. Welch, F. Siebenlist, I.Foster, J.Bresnahan, K.Czajkowski, J.Gawor, C.Kesselman, S.Meder, L.Pearlman, S.Tuecke, "Security for Grid Services," Preprint ANL/MCS-P1024-0203, February 2003. [pdf]
S. Leyffer, "Mathematical Programs with Complementarity Constraints," Preprint ANL/MCS-P1026-0203, February 2003. [pdf]
S. Bhowmick, L. McInnes, B. Norris, P. Raghavan, "The Role of Multimethod Linear Solvers in PDE-Based Simulations," Preprint ANL/MCS-P1027-0203, February 2003.
P. Hovland, K. Keahey, L. C. McInnes, B. Norris, L. Freitag, P. Raghavan, "A Quality-of-Service Architecture for High-Performance Numerical Components," Preprint ANL/MCS-P1028-0203, February 2003. [pdf]
A. Rodriguez, D. Sulakhe, E. Marland, V. Nefedova, G. X. Yu, and N. Maltsev, "GADU - Genome Analysis and Database Update Pipeline," Preprint ANL/MCS-P1029-0203, February 2003. [pdf]
M. Hereld, I. R. Judson, R. Stevens, "Application Performance Evaluation of the HTMT Architecture," Technical Memorandum ANL/MCS- TM-258, January 2003. [pdf]
G. von Laszewski, J. Gawor, S. Krishnan, K. Jackson, "Commodity Grid Kits - Middleware for Building Grid Computing Environments," Preprint ANL/MCS-1016-0103, January 2003. [pdf]
J. J. Evans, S. Baik, C. S. Hood, W. Gropp, "Toward Understanding Soft Faults in High Performance Cluster Networks," Preprint ANL/MCS-P1017-0103, January 2003. [pdf]
R. Thakur and W. Gropp, "Improving the Performance of MPI Collective Communication on Switched Networks," Preprint ANL/MCS-P1007-1102, November 2002. [pdf]
K. Amin, S. Nijsure, G. von Laszewski, "Open Collaborative Grid Service Architecture (OCGSA)," Preprint ANL/MCS-P1009-1102, November 2002. [pdf]
M. Vilayannur, R. B. Ross, P. H. Carns, R. Thakur, A. Sivasubramaniam, M. Kandemir, "Improving the Performance of the POSIX I/O Interface to PVFS," Preprint ANL/MCS-P1010-1102, November 2002. [pdf]
J. N. Lyness and G. Monegato, "Asymptotic Expansions for Two-Dimensional Hypersingular Integrals," Preprint ANL/MCS-P1011-1102, November 2002. [pdf]
G. X. Yu and E. Marland, "Establishment of a Knowledge Base for Function Annotations in High-Throughput Sequence Analysis," Preprint ANL/MCS-P1004-1002, October 2002. [pdf]
B. Nitzberg and M. M. Schopf, "Current Activities in the Scheduling and Resource Management Area of the Global Grid Forum," Preprint ANL/MCS-P990-0902, September 2002. [pdf]
I. Foster, F. Siebenlist, S. Tuecke, V. Welch, "Security and Certification Issues in Grid Computing," Preprint ANL/MCS-P994-0902, September 2002. [pdf]
L. Yang, I. Foster, and J. M. Schopf,, "Homeostatic and Tendency-based CPU Load Predictions," Preprint ANL/MCS-P997-0902, September 2002. [pdf]
L. McInnes, B. Norris, S. Bhowmick, P. Raghavan, "Adaptive Sparse Linear Solvers for Implicit CFD using Newton-Krylov Algorithms," Preprint ANL/MCS-P998-0902, September 2002. [pdf]
S. Krishnan, P. Wagstrom, G. von Laszewski, "GSFL: A Workflow Framework for Grid Services," Preprint ANL/MCS-P980-0802, August 2002. [pdf]
S. Vazhkudai and J. M. Schopf, "Using Disk Throughput Data in Predictions of End-to-End Grid Data Transfers," Preprint ANL/MCS-P981-0802, August 2002. [pdf]
M. R. Paul, M. C. Cross, P. F. Fischer, "Rayleigh-Benard Convection with a Radial Ramp in Plate Separation," Preprint ANL/MCS-P982-0802, August 2002. [pdf]
R. K. Madduri, C. S. Hood, and W. E. Allcock, "Reliable File Transfer in Grid Environments," Preprint ANL/MCS-P983-0802, August 2002. [pdf]
E. D. Dolan, R. Fourer, J.-P. Goux, and T. S. Munson, "Kestrel: A Callable Interface to the NEOS Server," Preprint ANL/MCS-P986-0802, August 2002. [pdf]
A. Majumder and R. Stevens,, "Color Non-Uniformity in Projection Based Displays: Analysis and Solutions," Preprint ANL/MCS-P989-0802, August 2002. [pdf]
K. Keahey and V. Welch, "Fine-Grain Authorization for Resource Management in the Grid Environment," Preprint ANL/MCS-P991-0802, August 2002. [pdf]
P. D. Hovland and B. Norris, "Users' Guide to ADIC 1.1," Technical Memorandum ANL/MCS-TM-225, July 2002. [pdf]
A. Ching, A. Choudhary, W.-K. Liao, R. Ross, W. Gropp, "Noncontiguous I/O through PVFS," Preprint ANL/MCS-P970-0702, July 2002. [pdf]
L. Wos, D. Ulrich, and B. Fitelson, "Vanquishing the XCB Question: The Methodological Discovery of the Last Shortest Axiom for the Equivalential Calculus," Preprint ANL/MCS-P971-0702, July 2002. [pdf]
G. von Laszewski, B. Ruscic, P. Wagstrom, S. Krishnan, K. Amin, S. Nijsure, S. Bittner, R. Pinzon, J. C. Hewson, M. L. Morton, M. Minkoff, A. Wagner, "A Grid Service-Based Active Thermochemical Table Framework," Preprint ANL/MCS-P972-0702, July 2002. [pdf]
G. von Laszewski, M. Russell, I. Foster, J. Shalf, G. Allen, G. Daues, J. Novotny, E. Seidel, "Community Software Development with the Astrophysics Simulation Collaboratory," Preprint ANL/MCS-P974-0702, July 2002. [pdf]
T. Iliescu and P. Fischer, "Backscatter in the Rational LES Model," Preprint ANL/MCS-P977-0702, July 2002. [pdf]
J. Annis, Y. Zhao, J. Voeckler, M. Wilde, S. Kent, I. Foster, "Applying Chimera Virtual Data Concepts to Cluster Finding in the Sloan Sky Survey," Preprint ANL/MCS-P978-0702, July 2002. [pdf]
M. W. Knop, P. A. Dinda, and J. M. Schopf,, "Windows Performance Monitoring and Data Reduction using WatchTower," Preprint ANL/MCS-P960-0602, June 2002. [pdf]
R. Evard, N. Desai, J.-P. Navarro, and D. Nurmi, "Clusters as Large-Scale Development Facilities," Preprint ANL/MCS-P968-0602, June 2002. [pdf]
J.-P. Navarro. R. Evard, D. Nurmi, N. Desai, "Scalable Cluster Administration - Chiba City I Approach and Lessons Learned," Preprint ANL/MCS-P969-0602, June 2002. [pdf]
P. M. Dickens and W. Gropp, "An Evaluation of a User-Level Data Transfer Mechanism for High-Performance Networks," Preprint ANL/MCS-P976-0602, June 2002. [pdf]
W. Allcock, J. Bester, J. Bresnahan, I. Foster, J. Gawor, J. A. Insley, J. M. Link, M. E. Papka, "GridMapper: A Tool for Visualizing the Behavior of Large-Scale Distributed Systems," Preprint ANL/MCS-P951-0502, May 2002. [pdf]
G. von Laszewski, I. Foster, J. Gawor, A. Schreiber, C. J. Pena, "InforGram: A Grid Service that Supports Both Infomation Queries and Job Execution," Preprint ANL/MCS-P952-0502, May 2002. [pdf]
L. Freitag, P. Knupp, T. Munson, S. Shontz,, "A Comparison of Optimization Software for Mesh Shape-Quality Improvement Problems," Preprint ANL/MCS-P953-0502, May 2002. [pdf]
I. Foster, J. Vöckler, M. Wilde, Y. Zhao, "Chimera: A Virtual Data System for Representing, Querying, and Automating Data Derivation," Preprint ANL/MCS-P954-0502, May 2002. [pdf]
W. Gropp, "Building Library Components That Can Use Any MPI Implementation," Preprint ANL/MCS-P956-0502, May 2002. [pdf]
J. J. More, "Computing Mountain Passes and Transition States," Preprint ANL/MCS-P957-0502, May 2002. [pdf]
M. Hereld, I. R. Judson, and R. Stevens, "DottyToto: A Measurement Engine for Aligning Multi-Projector Display Systems," Preprint ANL/MCS-P958-0502, May 2002. [pdf]
L. Pearlman, V. Welch, I. Foster, C. Kesselman, S. Tuecke, "A Community Authorization Service for Group Collaboration," Preprint ANL/MCS-P1042-0502, May 2002. [pdf]
I. R. Judson, "Access Grid Node Minimum Requirements," Technical Memorandum ANL/MCS-TM-257, April 2002. [pdf]
N. T. Karonis, B. Toonen, I. Foster, "MPICH-G2: A Grid-Enabled Implementation of the Message Passing Interface," Preprint ANL/MCS-P942-0402, April 2002. [pdf]
U. Naumann, "On Optimal Jacobian Accumulation for Single Expression use Programs," Preprint ANL/MCS-P944-0402, April 2002. [pdf]
N. T. Karonis, B. de Supinski, I. Foster, W. Gropp, E. Lusk, S. Lacour, "A Multilevel Approach to Topology-Aware Collective Operations in Computational Grids," Preprint ANL/MCS-P948-0402, April 2002. [pdf]
S. Vazhkudai and J. M. Schopf, "Predicting Sporadic Grid Data Transfers," Preprint ANL/MCS-P949-0402, April 2002. [pdf]
P. D. Hovland, U. Naumann, B. Norris, "An XML-Based Platform for Semantic Transformation of Numerical Programs," Preprint ANL/MCS-P950-0402, April 2002. [pdf]
T. Iliescu and P. Fischer,, "Large Eddy Simulation of Turbulent Channel Flows by the Rational LES Model," Preprint ANL/MCS-P938-0302, March 2002. [pdf]
L. Freitag, T. Leurent, P. Knupp, D. Melander, "MESQUITE Design: Issues in the Development of a Mesh Quality Improvement Toolkit," Preprint ANL/MCS-P940-0302, March 2002. [pdf]
G. von Laszewski, "Grid Computing: Enabling a Vision for Collaborative Research," Preprint ANL/MCS-P945-0302, March 2002. [pdf]
B. Norris, S. Balay, S. Benson, L. Freitag, P. Hovland, L. McInnes, B. Smith, "Parallel Components for PDEs and Optimization: Some Issues and Experiences," Preprint ANL/MCS-P932-0202, February 2002. [pdf]
U. Naumann, S. Forth. M. Tadjouddine, J. Phyce, "A Standard Interface for Elimination Sequences in Automatic Differentiation," Preprint ANL/MCS-P934-0205, February 2002. [pdf]
L. Hascoet, U. Naumann, and V. Pascual, "TBR Analysis in Reverse-Mode Automatic Differentiation," Preprint ANL/MCS-P936-0202, February 2002. [pdf]
I. Foster, "The Grid: A New Infrastructure for 21st Century Science," Preprint ANL/MCS-P937-0202, February 2002. [pdf]
M. Russell, G. Allen, G. Daues, I. Foster, E. Seidel, J. Novotny, J. Shalf, G. von Laszewski, "The Astrophysics Simulation Collaboratory: A Science Portal Enabling Community Software Development," Preprint ANL/MCS-P965-0202, February 2002. [pdf]
S. A. Mickelson, J. A. Taylor, and M. Dvorak, "Simplifying the Task of Generating Climate Simulations and Visualizations," Preprint ANL/CGC-010-0102, January 2002.
M. Dvorak, J. Taylor, and S. Mickelson, "Designing a Flexible Grid Enabled Scientific Modeling Interface," Preprint ANL/CGC-011-0102, January 2002.
P. Hovland, B. Norris, and B. Smith, "Making Automatic Differentiation Truly Automatic: Coupling PETSc with ADIC," Preprint ANL/MCS-P922-0102, January 2002.
L. Wos, "A Spectrum of Applications of Automated Reasoning," Preprint ANL/MCS-P923-0102, January 2002. [pdf]
U. Naumann, "Reducing the Memory Requirement in Reverse Mode Automatic Differentiation by Solving TBR Flow Equations," Preprint ANL/MCS-P925-0102, January 2002. [pdf]
S. Vazhkudai, J. M. Schopf, I. Foster, "Predicting the Performance of Wide Area Data Transfers," Preprint ANL/MCS-P927-0102, January 2002. [pdf]
G. von Laszewski, E. Blau, M. Gletzinger, J. Gawor, P. lane, S. Martin, M. Russell, "Software, Component, and Service Deployment in Computational Grids," Preprint ANL/MCS-P928-0102, January 2002. [pdf]
E. T. Ong, J. W. Larson, R. L. Jacob, "A Real Application of the Model Coupling Toolkit," Preprint ANL/MCS-P929-0102, January 2002. [pdf]
L. Wos and R. Thiele, "Hilbert's New Problem," Preprint ANL/MCS-P959-0102, January 2002. [pdf]
L. Wos, R. Veroff, and G. W. Pieper, "Logical Basis for the Automation of Reasoning: Case Studies," Preprint ANL/MCS-P963-0102, January 2002. [pdf]
L. A. Freitag and P. E. Plassmann, "Untangling Mapped Quadrilateral Meshes with Concave Boundaries," Preprint ANL/MCS-P920-1201, December 2001. [pdf]
E. M. Gertz and Stephen J. Wright, "OOQP User Guide," Technical Memorandum ANL/MCS-TM-252, October 2001. [pdf]
L. C. Berselli, G. P. Galdi, T. Iliescu, W. J. Layton, "Mathematical Analysis for the Rational Large Eddy Simulation Model," Preprint ANL/MCS-P914-1001, October 2001. [pdf]
P. Fischer and T. Iliescu, "A 3D Channel Flow Simulation at RE[sub \tau] = 180 Using a Rational LES Model," Preprint ANL/MCS-P893-0801, August 2001. [pdf]
M. Rose and K. Wilkinson, "Application of Model Search to Lattice Theory," Preprint ANL/MCS-P900-0801, August 2001.
I. Foster, "Grid Technologies and Applications: Architecture and Achievements," Preprint ANL/MCS-P902-0801, August 2001. [pdf]
W. D. Gropp, "Learning from the Success of MPI," Preprint ANL/MCS-P903-0801, August 2001. [pdf]
G. Allen, D. Angulo, I. Foster, G. Lanfermann, C. Liu, T. Radke, E. Seidel, and J. Shalf, "The Cactus Worm: Experiments with Dynamic Resource Discovery and Allocation in a Grid Environment," Preprint ANL/MCS-P904-0801, August 2001. [pdf]
R. Ross, D. Nurmi, A. Cheng, M. Zingale, "A Case Study in Application I/O on Linux Clusters," Preprint ANL/MCS-P888-0701, July 2001. [pdf]
A. Schreiber, "The Integrated Simulation Environment TENT," Preprint ANL/MCS-P890-0701, July 2001. [pdf]
G. von Laszewski, I. Foster, G. K. Thiruvathukal, B. Toonen, "A Computational Framework for Telemedicine," Preprint ANL/MCS-P897-0701, July 2001. [pdf]
E. D. Dolan and T. S. Munson, "The Kestrel Interface to the NEOS Server," Technical Memorandum ANL/MCS-TM-248, June 2001. [pdf]
J. Taylor and J. Larson, "Resolution Dependence in Modeling Extreme Weather Events," Preprint ANL/CGC-009-0601, June 2001. [pdf]
E. D. Dolan, "NEOS Server 4.0 Administrative Guide," Technical Memorandum ANL/MCS-TM-250, May 2001. [pdf]
W. McCune, "MACE 2.0 Reference Manual and Guide," Technical Memorandum ANL/MCS-TM-249, May 2001. [pdf]
M. R. Paul, M. C. Cross, P. F. Fischer, and H. S. Greenside, "Power Law Behavior of Power Spectra in Low Prandtl Number Rayleigh-Benard convection," Preprint ANL/MCS-P883-0501, May 2001. [pdf]
M. Anitescu and F. A. Potra, "A Time-Stepping Method for Stiff Multibody Dynamics with Contact and Friction," Preprint ANL/MCS-P884-0501, May 2001. [pdf]
S. Vazhkudai and G. von Laszewski, "A Greedy Grid - The Grid Economic Engine Directive," Preprint ANL/MCS-P886-0501, May 2001. [pdf]
J. Linderoth and S. Wright, "Decomposition Algorithms for Stochastic Programming on a Computational Grid," Preprint ANL/MCS-P875-0401, April 2001. [pdf]
L. R. Leung, J. G. Michalakes, and X. Bian, "Parallelization of a Subgrid Orographic Precipitation Scheme in an MM5-based Regional Climate Model," Preprint ANL/MCS-P876-0301 & ANL/CGC-006-0401, April 2001. [pdf]
. Iliescu, V. John, and W. J. Layton, "Convergence of Finite Element Approximations of Large Eddy Motion," Preprint ANL/MCS-P881-0401, April 2001. [pdf]
T. Colin, C. Galusinski, and H. G. Kaper, "Waves in Ferromagnetic Media," Preprint ANL/MCS-P880-0301, March 2001. [pdf]
S. J. Benson and Y.Ye,, "DSDP3: Dual Scaling Algorithm for General Positive Semidefinite Programming," Preprint ANL/MCS-P851-1000, February 2001. [pdf]
S. Vazhkudai, S. Tuecke, I. Foster, "Replica Selection in the Globus Data Grid,," Preprint ANL/MCS-P869-0201, February 2001.
I. Foster, C. Kesselman, and S. Tuecke, "The Anatomy of the Grid - Enabling Scalable Virtual Organizations," Preprint ANL/MCS-P870-0201, February 2001. [pdf]
B. Allcock, J. Bester, J. Bresnahan, A. L. Chervenak, I. Foster, C. Kesselman, S. Meder, V. Nefedova, D. Quesnel, S. Tuecke, "Secure, Efficient Data Transport and Replica Management for High-Performance Data-Intensive Computing," Preprint ANL/MCS-P871-0201, February 2001. [pdf]
E. M. Gertz,, "A Quasi-Newton Trust-Region Method," Preprint ANL/MCS-P873-0201, February 2001. [pdf]
E. M. Gertz, P. E. Gill, and J. Muetherig, "Users Guide for SnadiOpt: A Package Adding Automatic Differentiation to Snopt," Technical Memorandum ANL/MCS-TM-245, January 2001. [pdf]
J. S. Jiang, H. G. Kaper, G. K. Leaf, "Numerical Simulations at Magnetic Reversal in Layered Spring Magnets," Technical Memorandum ANL/MCS-TM-247, January 2001. [pdf]
I. R. Judson, "The [mu]Mural: A Six-Projector Tiled Display," Technical Memorandum ANL/MCS-TM-251, January 2001. [pdf]
S. J. Wright, "Effects of Finite-Precision Arithmetic on Interior-Point Methods for Nonlinear Programming," Preprint ANL/MCS-P705-0198, January 2001. [pdf]
E. D. Dolan and J. J. More', "Benchmarking Optimization Software with Performance Profiles," Preprint ANL/MCS-P861-1200, January 2001. [pdf][view online]
G. von Laszewski, I. Foster, J. Gawor, and P. Lane, "A Java Commodity Grid Kit," Preprint ANL/MCS-P862-1200, December 2000. [pdf]
W. D. Gropp, D. K. Kaushik, D. E. Keyes, B. F. Smith, "High Performance Parallel Implicit CFD," Preprint ANL/MCS-P863-1200, December 2000. [pdf]
M. Anitescu, "On Solving Mathematical Programs with Complementarity Constraints as Nonlinear Programs," Preprint ANL/MCS-P864-1200, December 2000. [pdf]
S. J. Wright, "Constraint Identification and Algorithm Stabilization for Degenerate Nonlinear Programs," Preprint ANL/MCS-P865-1200, December 2000. [pdf]
P. D. Hovland and L. C. McInnes, "Parallel Simulation of Compressible Flow Using Automatic Differentiation and PETSc," Preprint ANL/MCS-P796-0200, November 2000. [pdf]
P. D. Hovland, D. E. Keyes, L. C. McInnes, and W. Samyono, "Using Automatic Differentiation for Second-Order Matrix-free Methods in PDE-constrained Optimization," Preprint ANL/MCS-P855-1100, November 2000. [pdf]
B. Norris and P. D. Hovland,, "A Distributed Application Server for Automatic Differentiation," Preprint ANL/MCS-P856-1100, November 2000. [pdf]
T. Iliescu, "Genuinely Nonlinear Models for Convection-Dominated Problems," Preprint ANL/MCS-P857-1100, November 2000. [pdf]
J. More, "Automatic Differentiation Tools in Optimization Software," Preprint ANL/MCS-P859-1100, November 2000. [pdf]
M. Anitescu, "Nonlinear Programs with Unbounded Lagrange Multiplier Sets," Preprint ANL/MCS-P793-0200, October 2000. [pdf]
W. McCune, "The Robbins Equation," Preprint ANL/MCS-P847-1000, October 2000. [pdf]
W. D. Gropp, D. K. Kaushik, D. E. Keyes, and B. F. Smith, "Latency, Bandwidth, and Concurrent Issue Limitations in High-Performance CFD," Preprint ANL/MCS-P850-1000, October 2000. [pdf]
J. No, R. Thakur, D. Kaushik, L. Freitag, A. Choudary, "A Scientific Data Management System for Irregular Applications," Preprint ANL/MCS-P866-1000, October 2000. [pdf]
J. Taylor, "Global Environmental Management: A Historical Perspective," Preprint ANL/CGC-004-0900, September 2000.
I. Foster and C. Kesselman, "Computational Grids," Preprint ANL/MCS-P844-0900, September 2000. [pdf]
W. D. Gropp, D. K. Kaushik, D. E. Keyes, B. F. Smith, "Understanding the Parallel Scalability of an Implicit Unstructured Mesh CFD Code," Preprint ANL/MCS-P845-0900, September 2000. [pdf]
A. C. Calder, B. C. Curtis, L. J. Dursi, B. Fryxell, G. Henry, P. MacNeice, K. Olson, P. Ricker, R. Rosner, F. X. Timmes, H. M. Tufo, J. W. Truran, M. Zingale, "High-Performance Reactive Fluid Flow Simulations Using Adaptive Mesh Refinement on Thousands of Processors," Preprint ANL/MCS-P846-0900, September 2000. [pdf]
P. M. Dickens and R. Thakur, "On Implementing High-Performance Collective I/O," Preprint ANL/MCS-P852-0900, September 2000. [pdf]
D. Bonachea, P. Dickens, R. Thakur, "High-Performance File I/O in Java: Existing Approaches and Bulk I/O Extensions," Preprint ANL/MCS-P840-0800, August 2000. [pdf]
W. D. Gropp, D. K. Kaushik, D. E. Keyes, and B. F. Smith, "Performance Modeling and Tuning of an Unstructured Mesh CFD Application," Preprint ANL/MCS-P833-0700, July 2000. [pdf]
S. Balay, W. D. Gropp, L. C. McInnes, B. F. Smith, "Software for the Scalable Solution of PDEs," Preprint ANL/MCS-P834-0700, July 2000. [pdf]
R. Thakur and W. Gropp, "Parallel I/O," Preprint ANL/MCS-P837-0700, July 2000. [pdf]
A. Roy, I. Foster, W. Gropp, N. Karonis, V. Sander, and B. Toonen, "MPICH-GQ: Quality-of-Service for Message Passing Programs," Preprint ANL/.MCS-P838-0700, July 2000. [pdf]
W. McCune,, "Single Axioms for Boolean Algebra," Preprint ANL/MCS-TM-243, June 2000. [pdf]
R. Veroff and W. McCune, "A Short Sheffer Axiom for Boolean Algebra," Technical Memorandum ANL/MCS-TM-244, June 2000. [pdf]
J. Lyness and R. Cools, "Notes on a Search for Optimal Lattice Rules," Preprint ANL/MCS-P829-0600, June 2000. [pdf]
S. J. Benson and Y. Ye, "Approximating Maximum Stable Set and Minimum Graph Coloring Problems with the Positive Semidefinite Relaxation," Preprint ANL/MCS-P830-0600, June 2000. [pdf]
L. A. Freitag and P. M. Knupp, "Tetrahedral Mesh Improvement via Optimization of the Element Condition Number," Preprint ANL/MCS-P810-0500, May 2000. [pdf]
L. Wos and B. Fitelson, "The Automation of Sound Reasoning and Successful Proof Finding," Preprint ANL/MCS-P811-0500, May 2000.
E. G. de Pillis and L. G. de Pillis, "The Long-Term Impmact of University Budget Cuts: A Mathematical Model," Preprint ANL/MCS-P817-0500, May 2000. [pdf]
S. L. Lee and P. D. Hovland, "Sensitivity Analysis Using Parallel ODE Solvers and Automatic Differentiation inC: SensPVODE and ADIC," Preprint ANL/MCS-P818-0500, May 2000. [pdf]
J. G. Kim and P. D. Hovland, "Sensitivity Analysis and Parameter Tuning of a Sea-Ice Model," Preprint ANL/MCS-P819-0500, May 2000. [pdf]
J. Abate, S. Benson, L. Grignon, P. Hovland, L. McInnes, B. Norris, "Integrating Automatic Differentiation with Object-Oriented Toolkits for High-Performance Scientific Computing," Preprint ANL/MCS-P820-0500, May 2000. [pdf]
L. Childers, T. Disz, R. Olson, M. E. Papka, R. Stevens, and T. Udesh, "Access Grid: Immersive Group-to-Group Collaborative Visualization," Preprint ANL/MCS-P821-0500, May 2000.
M. Hereld, I. Judson, and R. Stevens, "Introduction to Building Projection-based Tiled Display Systems," Preprint ANL/MCS-P822-0500, May 2000.
G. von Laszewski, K. Shudo, and Y. Muraoka, "Grid-based Asynchronous Migration of Execution Context in Java Virtual Machines," Preprint ANL/MCS-P823-0500, May 2000. [pdf]
L. Wos and B. Fitelson, "Automating the Search for Answers to Open Questions," Preprint ANL/MCS-P825-0500, May 2000. [pdf]
L. Wos, "Appendix (to P825): Conjectures Concerning Proof, Design, and Verification," Preprint ANL/MCS-P825A-0500, May 2000. [pdf]
W. D. Gropp, "Runtime Checking of Datatype Signatures in MPI," Preprint ANL/MCS-P826-0500, May 2000. [pdf]
L. G. de Pillis and E. G. de Pillis, "A Mathematical Framework for Understanding Continuum Effects of Budget Fluctuations on a University," Preprint ANL/MCS-P806-0400, April 2000. [pdf]
I. Foster, A. Roy, and V. Sander, "A Quality of Service Architecture that Combines Resource Reservation and Application Adaptation," Preprint ANL/MCS-P807-0400, April 2000. [pdf]
S. J. Wright, "On Reduced Convex QP Formulations of Monotone LCP Problems," Preprint ANL/MCS-P808-0400, April 2000. [pdf]
L. A. Freitag and R. M. Loy, "Using Desktop Graphics Workstations for Interactive Remote Exploration of Large Data Sets," Preprint ANL/MCS-P809-0400, April 2000.
M. M. Marino, "Relativistic Pseudopotentional Incorporating Core/Valence Polarization and Nonlocal Effects," Technical Memorandum ANL/MCS-TM-229, March 2000.
E. A. Yildirim and S. J. Wright, "Warm-start Strategies in Interior-Point Methods for Linear Programming," Preprint ANL/MCS-P799-0300, March 2000. [pdf]
T. Canfield, T. Chien, H. Domanus, A. Tentner, C. Tzanos, R. Valentin, D. Weber, "A Coupled Newton-Krylov Solver for Improved CHAD Cache Utilization and Performance," Preprint ANL/MCS-P800-0300, March 2000. [pdf]
T. Udeshi, R. Hudson, and M. E. Papka, "Seamless Multiresolution Isosurfaces Using Wavelets," Preprint ANL/MCS-P801-0300, March 2000. [pdf]
G. von Laszewski, M.-H. Su, I. Foster,C. Kesselman, "Quasi Real-Time Microtomography Experiments at Photon Sources," Preprint ANL/MCS-P802-0300, March 2000. [pdf]
L. A. Freitag and R. M. Loy, "Comparison of Remote Visualization Strategies for Interactive Exploration of Large Data Sets," Preprint ANL/MCS-P803-0300, March 2000. [pdf]
J. Taylor, "Workshop Report - Bridging the Climate Information Gap," Preprint ANL/CGC-001-0200, February 2000.
J. Bresnahan, J. Insley, and M. E. Papka, "Interacting with Scientific Visualizations: User-Interface Tools within Spatially Immersive Displays," Preprint ANL/MCS-P789-0100, February 2000. [pdf]
J.-P. Goux, J. Linderoth, and M. Yoder,, "Metacomputing and the Master-Worker Paradigm," Preprint ANL/MCS-P792-0200, February 2000. [pdf]
G. von Laszewski, J. A. Insley, I. Foster, J. Bresnahan, C. Kesselman, M. Su, M. Thiebaux, M. L. Rivers, S. Wang, B. Tieman, I. McNulty, "Real-Time Analysis, Visualization, and Steering of Microtomography Experiments at Photon Sources," Preprint ANL/MCS-P794-0200, February 2000. [pdf]
C. H. Bischof, H. M. Becker and P. D. Hovland, "On Combining Computational Differentiation and Toolkits for Parallel Scientific Computing," Preprint ANL/MCS-P797-0200, February 2000. [pdf]
H. G. Kaper and H. Nordborg, "The Ginzburg-Landau Equations of Superconductivity in the Limit of Weak Coupling Near the Upper Critical Field," Preprint ANL/MCS-P786-0100, January 2000. [pdf]
W. McCune and O. Shumsky, "System Description: IVY," Preprint ANL/MCS-P787-0100, January 2000. [pdf]
W. D. Gropp, D. E. Keyes, L. C. McInnes, and M. D. Tidriri, "Globalized Newton-Krylov-Schwarz Algorithms and Software for Parallel Implicit CFD," Preprint ANL/MCS-P788-0100, January 2000. [pdf]
P. B. Albee, G. C. Stockman, and A. J. M. Smucker, "Extraction of Pores from Microtomographic Reconstructions of Intact Soil Aggregates," Preprint ANL/MCS-P790-0100, January 2000. [pdf]
J. K. Slaney and E. L. Lusk, "Parallelizing the Closure Computation in Automated Deduction," Preprint ANL/MCS-P123-0190, January 1990. [pdf]
C. Falzone, A. Chan, E. Lusk, and W. Gropp, "A Portable Method for Finding User Errors in the Usage of MPI Collective Operations," International Journal of High Performance Computing Applications, vol. 21, no. 2, , pp. 155-165. [pdf][view online]
N. Desai, E. Lusk, and R. Bradshaw, "A Composition Environment for MPI Programs," IJHPCA, vol. 21, no. 2, May 2007, pp. 166-173. [pdf][view online]
N. Desai, R. Bradshaw, and E. Lusk, "Disparity: Scalable Anomaly Detection for Clusters," 37th International Conference on Parallel Processing - Workshops, Portland, OR, IEEE/IET Electronic Library, September 2008, pp. 116-120. [pdf][view online]
N. Desai, E. Lusk, D. Buettner, A. Cherry, and T. Voran, "Simulating Failures on Large-Scale Systems," 37th International Conference on Parallel Processing - Workshops, IEEE, , pp. 103-108. [pdf][view online]
E. Lusk, N. Desai, R. Bradshaw, A. Lusk, R. Butler, "An Interoperability Approach to System Software, Tools, and Libraries for Clusters," International Journal of High Performance Computing Applications, vol. 20, no. 3, , pp. 401-407. [pdf][view online]
W. Gropp and E. Lusk, "Fault Tolerance in MPI Programs," International Journal of High Performance Computing Applications, vol. 18, no. 3, August 2004, pp. 363-372. [pdf][view online]
N. Desai, R. Bradshaw, A. Lusk, and E. Lusk, "MPI Cluster System Software," Recent Advances in Parallel Virtual Machine and Message Passing Interface, vol. 3241, Springer, May 2004, pp. 277-286. [pdf][view online]
N. Desai, E. Lusk, and R. Bradshaw, "MPISH2: Unix Integration for MPI Programs," 12th EuroPVM/MPI Users, vol. 3666, Sorrento, Italy, September 2005, pp. 333-342. [pdf][view online]
C. Falzone, A. Chan, E. Lusk, and W. Gropp, "Collective Error Detection for MPI Collective Operations," 12th EuroPVM/MPI Users, vol. 3666, Sorrento, Italy, 2005, September 2005, pp. 138-147. [pdf][view online]
R. Butler, W. Gropp, and E. Lusk, "Components and Interfaces of a Process Management System for Parallel Programs," Parallel Computing, vol. 27, February 2001, pp. 1417-1429. [pdf]
N. Maltsev, E. Marland, G. X. Yu, S. Bhatnagar, and R. Lusk, "Sentra, A Database of Signal Transduction Proteins," Nucleic Acids Research, vol. 30, no. 1, January 2002, pp. 349-350. [view online]
N. T. Karonis, B. R. de Supinski, I. Foster, W. Gropp, E. Lusk, and J. Bresnahan, "Exploiting Hierarchy in Parallel Computer Networks to Optimize Collective Operation Performance," 14th International Parallel and Distributed Processing Symposium, IEEE Electronic Library, Cancun, Mexico, May 2000. [pdf][view online]
R. Butler, W. Gropp, and E. Lusk, "A Scalable Process-Management Environment for Parallel Programs," 7th EuroPVM/MPI Users, vol. 1908, Balatonfured, Hungary, April 2000, pp. 168-175. [pdf][view online]
R. Ross, R. Latham, W. Gropp, E. Lusk, and R. Thakur, "Processing MPI Datatypes Outside MPI," 16th EuroPVM/MPI Users, Lecture Notes in Computer Science, Springer, vol. 5759, Espoo, Finland, 2009, , pp. 42-53. [pdf][view online]
P. Balaji, A. Chan, R. Thakur, W. Gropp, and E. Lusk, "Toward Message Passing for a Million Processes: Characterizing MPI on a Massive Scale Blue Gene/P," Computer Science - Research and Development, vol. 24, no. 1, Springer, August 2009, pp. 11-19. [pdf][view online]
P. Balaji, D. Buntinas, D. Goodell, W. Gropp, S. Kumar, E. Lusk, R. Thakur, and J. L. Traff, "MPI on a Million Processors," 16th EuroPVM/MPI Users, Lecture Notes in Computer Science, Springer, vol. 5759, Espoo, Finland, 2009, , pp. 20-30. [pdf][view online]
P. Balaji, A. Chan, W. Gropp, R. Thakur, and E. Lusk, "The Importance of Non-Data-Communication Overheads in MPI," International Journal of High Performance Computing Applications, vol. 24, no. 1, Sage Publications, Inc., February 2010, pp. 5-15. [pdf][view online]
E. L. Lusk, S. C. Pieper, and R. M. Butler, "More Scalability, Less Pain: A Simple Programming Model and Its Implementation for Extreme Computing," SciDAC Review, vol. 17, March 2010, pp. 30-37. [pdf][view online]
Buettner, D.,Desai, N.,Lan, Z.,Tang, W., "Fault-aware utility-based job scheduling on BlueGene/P systems," 2009 IEEE Conference on Cluster Computing (Cluster 2009), New Orleans, LA, September 2009. [view online]
P. Balaji, D. Buntinas, D. Goodell, W. Gropp, J. Krishna, E. Lusk, and R. Thakur, "PMI: A Scalable Parallel Process-Management Interface for Extreme-Scale Systems," 17th EuroMPI Conference, Lecture Notes in Computer Science, Springer, vol. 6305, Stuttgart, Germany, 2010, , pp. 31-41. [pdf][view online]
E. Lusk and W. McCune, "ACL2 for Parallel Systems Software: A Progress Report," Proc. 2nd ACL2 Workshop, December 2000. [pdf]
C. Gotbrath, B. Barrett, B. Gropp, E. Lusk, and J. Squyres, "An Interface to Support the Identification of Dynamic MPI 2 Processes for Scalable Parallel Debugging," 13th EuroPVM/MPI Users, vol. 4192, Bonn, Germany, 2006, September 2006, pp. 115-122. [pdf][view online]
W. Gropp and E. Lusk, "Dynamic Process Management in an MPI Setting," Proc. 7th IEEE Symposium on Parallel and Distributed Processing, IEEE Press, October 1995, pp. 530-534. [pdf][view online]
R. Rosner, A. Calder, J. Dursi, B. Fryxell, D. Q. Lamb, J. C. Niemeyer, K. Olson, P. Ricker, F. X. Timmes, J. W. Truban, H. Tufo, Y.-N. Young, M. Zingale, E. Lusk, and R. Stevens, "Flash Code: Studying Astrophysical Thermonuclear Flashes," Computing in Science and Engineering, vol. 2, no. 2, March 2000, pp. 33-41. [pdf][view online]
W. D. Gropp, E. Lusk, and D. Swider, "Improving the Performance of MPI Derived Datatypes," Message Passing Interface Developer, Atlanta, Georgia, March 1999. [pdf]
E. Lusk and R. A. Overbeek, "Reasoning about Equality," Journal of Automated Reasoning, vol. 1, no. 2, January 1985, pp. 209-228. [pdf][view online]
J. Slaney, E. Lusk, and W. McCune, "SCOTT: Semantically Constrained OTTER System Description," The International Conference on Automated Deduction (CADE-12), Lecture Notes in Computer Science, Springer, vol. 814, Nancy France, 1994, March 1994, pp. 764-768. [pdf][view online]
O. S. Matlin, E. Lusk, and W. McCune, "SPINning Parallel Systems Software," 9th International SPIN Workshop, Lecture Notes in Computer Science, Springer, vol. 2318, Grenoble, France, 2002, , pp. 213-220. [pdf][view online]
J. Larsson, and S.K. Lele, "Direct Numerical Simulation of Canonical Shock/Turbulence Interaction," Physics of Fluids, vol. 21, no. 12, American Institute of Physics, December 2009, pp. 126101. [view online]
Bhatele´, A., Kale´, L. , "Benefits of Topology Aware Mapping for Mesh Interconnects,".
S. Alam, R. Barrett, M. Bast, M. R. Fahey, J. Kuehn, C. McCurdy, J. Rogers, P. Roth, R. Sankaran, J. S. Vetter, P. Worley, W. Yu , "Early Evaluation of IBM BlueGene/P,” Conference on High Performance Networking and Computing, Proceedings of the 2008 ACM/IEEE conference on Supercomputing (2008). ,". [view online]
P. Balaji, W. Feng, H. Lin, J. Archuleta, S. Matsuoka, A. Warren, J. Setubal, E. Lusk, R. Thakur, I. Foster, D. S. Katz, S. Jha, K. Shinpaugh, S. Coghlan, and D. Reed, "Global-Scale Distributed I/O with ParaMEDIC," Concurrency and Computat.: Prac. Exper., vol. 22, no. 16, John Wiley & Sons, Ltd., November 2010, pp. 2266-2281. [pdf][view online]
J.C. Silverstein, C. Walsh, F. Dech, E. Olson, M. Papka, N. Parsad, and R. Stevens, "Multi-Parallel Open Technology to Enable Collaborative Volume Visualization,".
R. Stevens, "Visualization Challenges at the Intersection of Petascale Computing and Biological Science," IEEE Visualization 2007, Sacramento, CA, October 2007. [view online]
J.C. Silverstein, C. Walsh, F. Dech, E. Olson, M.E. Papka, N. Parsad, R.L. Stevens, "Immersive Virtual Anatomy course Using a Cluster of Volume Visualization Machines and Passive Stereo," Medicine Meets Virtual Reality 15 (MMVR15) Conference,, 2007. . [view online]
G.R. Gao, T. Sterling, R. Stevens, M. Hereld, and W. Zhu, "ParalleX: A Study of a New Parallel Computation Model," IEEE International Parallel and Distributed Processing Symposium, Rhodes Island, Greece, March 2007, pp. 294. [view online]
J. Binns, F. Dech, M.E. Papka, J.C. Silverstein, R. Stevens, "Developing a Distributed Collaborative Radiological Visualization Application," From Grid to Healthgrid: Proceedings of Healthgrid 2005, vol. 112, IOS Press, March 2005, pp. 70-79. [view online]
R. L. Grossman, M. Sabala, J. Alimohideen, A. Aanand, J. Chaves, J. Dillenburg, S. Eick, J. Leigh, P. Nelson, M. E. Papka, D. Rorem, R. Stevens, S. Vejcik, L. Wilkinson, and P. Zhang, "Real Time Change Detection and Alerts from Highway Traffic Data,". [view online]
M. Hereld and R. L. Stevens, "Large Neural Simulations on Large Parallel Computers ," International Journal of Bioelectromagnetism, vol. 7, May 2005, pp. 44-46. [view online]
W. van Drongelen, H.C. Lee, H. Koch, M. Hereld, F. Elsen, Z. Chen, R.L. Stevens , "Emergent Epileptiform Activity in Neural Networks with Weak Excitatory Synapses," IEEE Trans Neural Syst Rehabil Eng., vol. 13, no. 2, June 2005, pp. 236-241. [view online]
M. Hereld and R.L. Stevens, "Pixel–Aligned Warping for Multi–Projector Tiled Displays," Proceedings of the 2005 IEEE Computer Society Conference on Computer Vision and Pattern Recognition (CVPR'05), vol. 3, IEEE Computer Society, January 2005, pp. 104. [view online]
W. van Drongelen, H. C. Lee, H. Koch, F. Elsen, M. S. Carroll, M. Hereld, R.L. Stevens, "A Model of Neocortex: Interaction between Cellular Voltage–Sensitive Conductance and Network Parameters in a Model of Neocortex Can Generate Epileptiform Bursting," Conf Proc IEEE Eng Med Biol Soc., vol. 6, , pp. 4003-5a. [view online]
W. Xingfu, V. Taylor, J. Geisler, R. Stevens, "Isocoupling: Reusing Kernel Coupling Values to Predict the Performance of Parallel Applications," Proceedings International Parallel and Distributed Processing Symposium (IPDPS) 2004, vol. 1, Sante Fe, New Mexico, IEEE Computer Society, April 2004, pp. 43b. [view online]
J. Binns, G. Gill, M. Hereld, D. Jones, I. Judson, T. Leggett, A. Majumder, M. McCrory, M.E. Papka, R. Stevens, "Applying Geometry and Color Correction to Tiled Display Walls," Visualization 2002, Boston, MA,, October 2002.
A. Majumder and R. Stevens, "Color Non–Uniformity in Projection Based Displays: Analysis and Solutions," IEEE Transactions on Visualization and Computer Graphics, vol. 10, no. 2, IEEE Educational Activities Department, January 2004, pp. 177-188. [view online]
M. Hereld, I. R. Judson, and R. Steven, "DottyToto: A Measurement Engine for Aligning Multi–Projector Display Systems," Projection displays IX, vol. 5002, Santa Clara, CA, Society of Photo-Optical Instrumentation Engineers, January 2003, pp. 73-86. [view online]
X. Wu, V. Taylor, X. Li, J. Geisler, Z. Lan, R. Stevens, M. Hereld, and I. R. Judson, "Design and Development of Prophesy Performance Database for distributed Scientific Applications," 10th SIAM Conference on Parallel Processing for Scientific Computing, January 2001. [view online]
Terrence Disz, Robert Olson, and Rick Stevens, "Performance Model of the Argonne Voyager Multimedia Server," Proceedings of the IEEE International Conference on Application-Specific Systems, Architectures and Processors, IEEE Computer Society, , pp. 316. [view online]
T. Disz, I. Judson, R. Olson, and R. Stevens, "The Argonne Voyager Multimedia Server," Proceedings of the 6th IEEE International Symposium on High Performance Distributed Computing, IEEE Computer Society, August 1997, pp. 71-80. [view online]
M. E. Papka and R. Stevens, "UbiWorld: An Environment Integrating Virtual Reality, Supercomputing and Design," Proceedings of the 5th IEEE International Symposium on High Performance Distributed Computing, Syracuse, New York, IEEE Computer Society, August 1996, pp. 306-307. [view online]
T.L. Disz, M.E. Papka, R. Stevens, "UBIWorld: An Environment Integrating Virtual Reality," Proceedings of the 6th Heterogeneous Computing Workshop (HCW '97), Geneva, Switzerland, IEEE Computer Society, January 1997, pp. 46. [view online]
V. E. Taylor, J. Chen, T. Canfield, and R. Stevens, "A Decomposition Method for Efficient Use of Distributed Supercomputers for Finite Element Applications," Proceedings of the IEEE International Conference on Application-Specific Systems, Architectures, and Processors, IEEE Computer Society, January 1996, pp. 12-24. [view online]
I. Foster, M. E. Papka, and R. Stevens, "Tools for Distributed Collaborative Environments: A Research Agenda," Proceedings of the 5th IEEE International Symposium on High Performance Distributed Computing, Syracuse, NY, USA, IEEE Computer Society, January 1996, pp. 23. [view online]
M. Papka, T. Disz, R. Stevens, M. Pellegrino, and V. E. Taylor, "Virtual Reality Visualization of Parallel Molecular Dynamics Simulations," Society for Computer Simulation, January 1995, pp. 483-487. [view online]
T. L. Disz. M. E. Papka, M. Pellegrino, and R. Stevens, "Sharing Visualization Experiences among Remote Virtual Environments," Proceedings of the International Workshop on HPC for Computer Graphics and Visualisation, Springer–Verlag, January 1995, pp. 217–237. [view online]
V. E. Taylor, R. Stevens, T. Canfield, "Performance Models of Interactive, Immersive Visualization for Scientific Applications," Proceedings of the International Workshop on High Performance Computing for Computer Graphics, Swansea, U.K., Springer-Verlag, July 1995, pp. 238-252. [view online]
V. Taylor, R. Stevens, and K. Arnold, "Parallel Molecular Dynamics: Communication Requirements for Massively Parallel Machines," Proceedings of the Fifth Symposium on the Frontiers of Massively Parallel Computation (Frontiers'95), IEEE Computer Society, February 1995, pp. 156. [view online]
M. Henderson, W. Nickless, and R. Stevens, "A Scalable High–Performance I/O System," In Scalable High-Performance Computing Conference, Knoxville, TN, May 1994, pp. 79-86.
J.B. Drake, R.E. Flannery, D.W. Walker, P.H. Worley, I.T. Foster, J.G. Michalakes, R. L. Stevens, J. J. Hack, and D. L Williamson, "The Message–Passing Version of the Parallel Community Climate Model," Parallel Supercomputing in Atmospheric Sciences, World Scientific, January 1993, pp. 500–513. [view online]
L. Wos, S. Winker, W. McCune, R. Overbeek, E. Lusk, R. Stevens, and R. Butler, "Automated Reasoning Contributes to Mathematics and Logic," 10th International Conference on Automated Deduction, Lecture Notes in Artificial Intelligence, Springer, vol. 449, Springer Berlin / Heidelberg, January 1990, pp. 485-499. [view online]
I. Foster and R. Stevens, "Parallel Programming with Algorithmic Motifs," Proceedings of the 1990 International Conference on Parallel Processing, vol. 2, Urbana-Champaign, IL, USA, Pennsylvania State University Press, August 1990, pp. 26-34. [view online]
E. Lusk, R. Butler, T. Disz, R. Olson, R. Overbeek, R. Stevens, D. H. D. Warren, A. Calderwood, P. Szeredi, S. Haridi, P. Brand, M. Carlsson, A Ciepielewski, and B. Housman, "The Aurora OR-Parallel Prolog System," Selected papers on parallel logic programming from the International Conference on Fifth Generation Computer Systems, 1988, vol. 7, no. 2, Ohmsha, January 1990, pp. 243 - 271. [view online]
R. Stevens, "Challenge Problems from Nonassociative Rings for Theorem Provers," Lecture Notes in Computer Science,, vol. 310, New York, New York, USA, Springer Berlin / Heidelberg, January 1988, pp. 730–734.
F. E. Angly, D. Willner, A. Prieto-Davo, R. A. Edwards, R. Schmieder, R. Vega-Thurber, D. A. Antonopoulos, K. Barott, M. T. Cottrell, C. Desnues, E. A. Dinsdale, M. Furian, M. Haynes, M. R. Henn, Y. Hu, D. L. Kirchman, T. McDole, J. D. McPherson, F. Meyer, R. M. Miller, E. Mundt, R. K. Naviaux, B. Rodriguez-Mueller, R. L. Stevens, L. Wegley, L. Zhang, B. Zhu, F. Rohwer, "The GAAS Metagenomic Tool and Its Estimations of Viral and Microbial Average Genome Size in Four Major Biomes," PLoS Comput Biol., vol. 5, no. 12, December 2009. [view online]
L.K. McNeil, C. Reich, R.K. Aziz, D. Bartels, M. Cohoon, T. Disz, R.A. Edwards, S.Y Gerdes, K. Hwang, M. Kubal, G.R. Margaryan, F. Meyer, W. Mihalo, G.J. Olsen, R. Olson, A.L. Osterman, D. Paarmann, T. Paczian, B. Parrello, G.D. Pusch, D.A. Rodinov, X. Shi, O. Vassieva, V. Vonstein, O.P. Zagnitko, F. Xia, J. Zinner, R. Overbeek, R.L. Stevens, "The National Microbial Pathogen Database Resource (NMPDR): A Genomics Platform Based on Subsystem Annotation," Nucleic Acids Res, vol. 35, January 2007, pp. 347-353. [view online]
E.A. Dinsdale, R.A. Edwards, D. Hall, F. Angly, M. Breitbart, J.M. Brulc, M. Furlan, C. Desnues, M. Haynes, L. Li, L. McDaniel, M.A. Moran, K.E. Nelson, C. Nilsson, R. Olson, J. Paul, B.R. Brito, Y. Ruan, B.K. Swan, R. Stevens, D.L. Valentine, R.V. Thurber, L. Wegley, B.A. White, F. Rohwer, "Functional Metagenomic Profiling of Nine Biomes," Nature., vol. 452, no. 7187, April 2008, pp. 629-632. [view online]
R.K. Aziz, D. Bartels, A.A. Best, M. DeJongh, T. Disz, R.A. Edwards, K. Formsma, S. Gerdes, E.M. Glass, M. Kubal, F. Meyer, G.J. Olsen, R. Olson, A.L. Osternan, R.A. Overbeek, L. K. McNeil, D. Paarmann, T. Paczian, B. Parrello, G.D. Pusch, C. Reich, R. Stevens, O. Vassieva, V. Vonstein, A. Wilke, O. Zagnitko, "The RAST Server: Rapid Annotations using Sybsystems Technology," BMC Genomics., vol. 9, February 2008, pp. 75.
F. Meyer, D. Paarmann, M. D’Souza, R.D. Olson, E.M. Glass, M. Kubal, T. Paczian, A. Rodriquez, R. Stevens, A. Wilke, J. Wilkening, R.A. Edwards, "The Metagenomics RAST server – A Public Resource for the Automatic Phylogenetic and Functional Analysis of Metagenomes," BMC Bioinformatics, vol. 9, September 2008, pp. 386. [view online]
M. Hereld, H. Lee, W.V. Drongelen, R. Stevens, "Image-based Configuration and Interaction for Large Neural Network Simulations,," Sixteenth Annual Computational Neuroscience Meeting, vol. 8, no. 2, Toronto, Canada, July 2007, pp. 22. [view online]
M. Benayoun, J. Dwyer, H. Lee, M. Hereld, R.L. Stevens, W. van Drongelen, "Simulated –annealing as a Tool to Identify Parameter Values Associated with Epileptiform Activity," Sixteenth Annual Computational Neuroscience Meeting, vol. 8, no. 2, Toronto, Canada, July 2007, pp. 23. [view online]
S. Gerdes, R. Edwards, M. Kubal, M. Fonstein, R. Stevens, A. Osterman, "Essential Genes on Metabolic Maps," Curr Opin Biotechnol, vol. 17, no. 5, October 2006, pp. 448-456. [view online]
W. van Dongelen, H. Loch, F.P. Elsen, H.C. Lee, A. Mrejeru, E. Doren, C. J. Marcuccilli, M. Hereld, R.L. Stevens, J.-M. Ramirez, "The Role of Persistent Sodium Current in Bursting Activity of Mouse Neocortical Networks in Vitro," J Neurophysiol, vol. 96, no. 5, November 2006, pp. 2564-2577. [view online]
R. Overbeek, T. Begley, R. Butler, J. Choudhuri, H. Y. Chuang, M. Cohoon, V. de Crécy-Lagard, N. Diaz, T. Disz, R. Edwards, M. Fonstein, E. Frank, S. Gerdes, E. Glass, A. Goesmann, A. Hanson, D. Iwata-Reuyl, R. Jensen, N. Jamshidi, L. Krause, M. Kubal, N. Larsen, B. Linke, A. McHardy, F. Meyer, H. Neuweger, G. Olsen, R. Olson, A. Osterman, V. Portnoy, G. Pusch, D. Rodionov, C. Rückert, J. Steiner, R. Stevens, I. Thiele, O. Vassieva, Y. Ye, O. Zagnitko, V. Vonstein, "The Subsytems Approach to Genome Annotation and its Use in the Project to Annotate 1000 Genomes,," Nucleic Acids Res, vol. 33, no. 17, October 2005, pp. 5691-5702. [view online]
R. Overbeek, R. Stevens, T. Disz, "The SEED: A Peer to Peer Environment for Genome Annotation," Communications of the ACM, vol. 47, no. 11, ACM, January 2004, pp. 46 - 51. [view online]
J.C. Silverstein, F. Dech, J. Binns, D. Jones, M.E. Papka and R. Stevens, "Distributed Collaborative Radiological Visualization using Access Grid," Medicine Meets Virtual Reality 13: The Magical Next Becomes the Medical Now, vol. 111, Long Beach, California, January 2005, pp. 477-481. [view online]
P.W. Arzberger, A. Farazdel, A. Konagaya, L. Ang, S. Shimojo and R.L. Stevens, "Life Sciences and Cyberinfrastructure: Dual and Interacting Revolutions that Will Drive Future Science,” ," New Generation Computing, vol. 22, no. 2, Ohmsha, Ltd., November 2003, pp. 97-110. [view online]
A. Majumder, R. Stevens, "Perceptual Photometric Seamlessness in Projection–Based Tiled Displays," ACM Transactions on Graphics (TOG), vol. 24, no. 1, ACM, January 2005, pp. 118 - 139. [view online]
A. Choudhary, M. Kandemir, J. No, G. Memik, X. Shen, W. Liao, H. Nagesh, S. More, V. Taylor, R. Thakur, and R. Stevens, "Data Management for Large–Scale Scientific Computations in High Performance Distributed Systems," Cluster Computing, vol. 3, no. 1, Kluwer Academic Publishers, January 2000, pp. 45 - 60. [view online]
