2012 Publications
T. Peterka, J. Kwan, A. Pope, H. Finkel, K. Heitmann, S. Habib, J. Wang, G. Zagaris, "Meshing the Universe: Integrating Analysis in Cosmological Simulations," Preprint ANL/MCS-P3095-1212, December 2012. [pdf]
J. M. Wozniak, T. G. Armstrong, M. Wilde, D. S. Katz, E. Lusk, I. T. Foster, "Scalable Data Flow Programming for Many-Task Applications," Preprint ANL/MCS-P4007-1212, December 2012. [pdf]
L. Wos, "The Legacy of a Great Researcher," Preprint ANL/MCS-P4009-1212, December 2012. [pdf]
J. M. Wozniak, T. G. Armstrong, M. Wilde, D. S. Katz, E. Lusk, I. T. Foster, "A Model for Tracing and Debugging Large-Scale Task-Parallel Programs with MPE," Preprint ANL/MCS-P4002-1212, December 2012. [pdf]
R. L. Jacob, J. Krishna, X. Xu, S. Mickelson, T. Tautges, M. Wilde, R. Latham, I. Foster, R. Ross, M. Hereld, J. Larson, P. Bochev, K. Peterson, M. Taylor, K. Schuchardt, J. Yin, D. Middleton, M. Haley, D. Brown, R. Brownrigg, W. Huang, D. Shea, M. Vertenstein, K. Ma, J. Xie, "Bringing Task and Data Parallelism to Analysis of Climate Model Output," Preprint ANL/MCS-P4003-1212, December 2012. [pdf]
J. M. Wozniak, M. Wilde, D. S. Katz, "JETS: Language and System Support for Many-Parallel-Task Workflows," Preprint ANL/MCS-P4005-1212, December 2012. [pdf]
J. Chen, L. Wang, M. Anitescu, "A Fast Summation Tree Code for Matern Kernel," Preprint ANL/MCS-P4001-1212, December 2012. [pdf]
C. Teng, M. Min, J. Wang, "Pseudospectral and Runge-Kutta-Nystrom Methods for Second-Order Wave Equations: Stable and Accurate Boundary Treatments," Preprint ANL/MCS-P4008-1212, December 2012. [pdf]
P. Carns, K. Harms, D. Kimpe, J. M. Wozniak, R. Ross, L. Ward, M. Curry, R. Klundt, G. Danielson, C. Karakoyunlu, J. Chandy, B. Settlemyer, W. Gropp, "A Case for Optimistic Coordination in HPC Storage Systems," Preprint ANL/MCS-P3052-1112, November 2012. [pdf]
G. C. Fox, G. Von Laszewski, J. Diaz, K. Keahey, J. Fortes, R. Figueiredo, S. Smallen, W. Smith, A. Grimshaw, "FutureGrid: A Reconfigurable Testbed for Cloud, HPC and Grid Computing," Preprint ANL/MCS-P3053-1112, November 2012. [pdf]
Z. Insepov and J. Norem, "Can Surface Cracks and Unipolar Arcs Explain Breakdown and Gradient Limits?," Preprint ANL/MCS-P3058-1112, November 2012. [pdf]
D. Goodell, S. J. Kim, R. Latham, M. Kandemir, and R. Ross, "An Evolutionary Path to Object Storage Access," Preprint ANL/MCS-P3051-1112, November 2012. [pdf]
D. Ozog, J. R. Hammond, J. Dinan, P. Balaji, S. Shende, A. Malony, "Inspector-Executor Load Balancing Algorithms for Block-Sparse Tensor Contractions," Preprint ANL/MCS-P3056-1112, November 2012. [pdf]
P. Belotti, C. Kirches, S. Leyffer, J. Linderoth, J. Luedtke, and A. Mahajan, "Mixed-Interger Nonlinear Optimization," Preprint ANL/MCS-P3060-1112, November 2012. [pdf]
V. M. Zavala, "Clustering-Based Interior-Point Strategies for Stochastic Programs," Preprint ANL/MCS-P3050-1112, November 2012. [pdf]
X. Zeng, B. A. Drewniak, E. M. Constantinescu, "Calibration of the Crop Model in the Community Land Model," Preprint ANL/MCS-P3054-1112, November 2012. [pdf]
A. R. Siegel, K. Smith, P. K. Romano, B. Forget, K. G. Felker, "Multi-Core Performance Studies of a Monte Carlo Neutron Transport Code," Preprint ANL/MCS-P3057-1112, November 2012. [pdf]
S. Abhyankar, Q. Cui, and A. J. Flueck, "Fast Power Flow Analysis using a Hybrid Current-Power Balance Formulation in Rectangular Coordinates," Preprint ANL/MCS-P3082-1112, November 2012. [pdf]
S. Abhyankar and B. Smith, "PETSc: An Advanced Math and Computing Framework for Rapidly Developing Parallel Smart Grid Applications," Preprint ANL/MCS-P3067-1112, November 2012. [pdf]
T. Nelson, G. Belter, J. G. Siek, E. Jessup, B. Norris, "Reliable Generation of High-Performance Matrix Algebra," Preprint ANL/MCS-P3048-1012, October 2012. [pdf]
J. Dinan, P. Balaji, J. R. Hammond, Sriram Krishnamoorthy, and V. Tipparaju, "Supporting the Global Arrays PGAS Model Using MPI One-Sided Communication," Proc. 26th Intl. Parallel and Distributed Processing Symp. (IPDPS), 2012. Also Preprint ANL/MCS-P1878-0411, October 2012. [pdf]
D. Keyes, L.C. McInnes, C. Woodward, W. Gropp, E. Myra, M. Pernice, etc., "Multiphysics Simulations: Challenges and Opportunities," Technical Memorandum ANL/MCS-TM-321, October 2012. [pdf]
C. Sigovan, C. Muelder, K. Ma, J. Cope, K. Iskra, R. Ross, "A Visual Network Analysis Method for Large Scale Parallel I/O Systems," Preprint ANL/MCS-P3042-1012, October 2012. [pdf]
M. V. Stoitsov, N. Schunck, M. Kortelainen, N. Michel, H. Nam, E. Olsen, J. Sarich, S. M. Wild, "Axially Deformed Solution of the Skyrme-Hartree-Fock-Bogolyubov Equations Using The Transformed Harmonic Oscillator Basis (II) HFBTHO v2.00c: A New Version of the Program," Journal, vol. 184, no. 6, Computer Physics Communications, June 2013, pp. 1592-1604. Also Preprint ANL/MCS-P3043-1012, October 2012. [pdf][view online]
L. Grinberg, J. A. Insley, D. A. Fedosov, V. Morozov, M. E. Papka, and G. Em Karniadakis, "Tightly Coupled Atomistic-Continum Simulations of Brain Blood Flow on Petaflop Supercomputers," Computer Science Engineering, 1969. Also Preprint ANL/MCS-P3041-1012, October 2012. [pdf]
P. Carns, K. Harms, R. Latham, and R. Ross, "Performance Analysis of Darshan 2.2.3 on the Cray XE6 Platform," Technical Memorandum ANL/MCS-TM-331, October 2012. [pdf]
M. Schwanen, A. Duggleby, P. Fischer, "Orthogonal Decompostition Analysis and Optimization of Turbine Vane Endwall Horseshoe Vortex Dynamics and Heat Transfer," Preprint ANL/MCS-P3045-1012, October 2012. [pdf]
M. Anitescu, O. Roderick, J. Utke, "Derivative-Based Uncertainty Quantification: Automatic Differentiation Tools for SAS," Argonne Report ANL/MCS-TM-328, September 2012. [pdf]
M. Lubin, K. Martin, C. Petra, B. Sandikci, "On Parallelizing Dual Decomposition in Stochastic Integer Programming," Preprint ANL/MCS-P3037-0912, September 2012. [pdf]
D. P. Kouri, M. Heinkenschloos, D. Ridzal, B. G. Van Bloemen Waanders, "A Trust-Region Algorithm with Adaptive Stochastic Collocation for PDE Optimization Under Uncertainty," Preprint ANL/MCS-P3035-0912, September 2012. [pdf]
N. Goldberg, Y. Kim, S. Leyffer, T. Veselka, "Adaptively Refined Dynamic Program for Linear Spline Regression," Preprint ANL/MCS-P3040-0912, September 2012. [pdf]
O. Roderick and M. Anitescu, "Intrusive Uncertainty Quantification for NeK5000: Development of Intrusive Uncertainty Quantification for High-Dimensional, High-Fidelity Codes," Argonne Report ANL/MCS-TM-329, September 2012. [pdf]
J. Chen, L. C. Mcinnes, H. Zhang, "Analysis and Practical Use of Flexible Bicgstab," Preprint ANL/MCS-P3039-0912, September 2012. [pdf]
J. Chen and L. Li, "Parallelizing the Conjugate Gradient Algorithm for Multilevel Toeplitz Systems," Preprint ANL/MCS-P3038-0912, September 2012. [pdf]
B. Dudson, S. Farley, L. C. McInnes, "Improved Nonlinear Solvers in BOUT++," Preprint ANL/MCS-P3025-0812, August 2012. [pdf]
A. Gainaru, F. Cappello, M. Snir, W. Kramer, "Fault Prediction Under the Mircroscope: A Closer Look into HPC Systems," Preprint ANL/MCS-P3023-0812, August 2012. [pdf]
M. Min, J. Fu, A. Mametjanov, "Hybrid Programming and Performance for Beam Propagation Modeling," Preprint ANL/MCS-P3033-0812, August 2012. [pdf]
S. T. Choi, M. A. Saunders, "Algorithm & Documentation: MINRES-QLP for Singular Symmetric and Hermitian Linear Equations and Least-Squares Problems," Preprint ANL/MCS-P3027-0812, August 2012. [pdf]
D. Pugmire, T. Peterka, C. Garth, "Parallel Integral Curves," Preprint ANL/MCS-P3030-0812, August 2012. [pdf]
A. Tasora and M. Anitescu, "A Complementarity-Based Rolling Friction Model for Rigid Contacts," Preprint ANL/MCS-P3020-0812, August 2012. [pdf]
K. Iskra, K. Yoshii, R. Gupta, P. Beckman, "Power Management for Exascale," Preprint ANL/MCS-P3011-0712, July 2012. [pdf]
Z. Zhang, D. S. Katz, J. M. Wozniak, A. Espinosa, I. Foster, "Design and Analysis of Data Management in Scalable Parallel Scripting," Preprint ANL/MCS-P3012-0712, July 2012. [pdf]
C. Choudary, J. Godwin, J. Holewinski, D. Karthik, D. Lowell, A. Mametjanov, B. Norris, G. Sabin, P. Sadayappan, "Stencil-Aware GPU Optimization of Iterative Solvers*," Preprint ANL/MCS-P3008-0712, July 2012. [pdf]
A. Gutfraind, L. A. Meyers, I. Safro, "Multiscale Network Generation," Preprint ANL/MCS-P3009-0712, July 2012. [pdf]
P. Balaprakash, D. Buntinas, A. Chan, A. Guha, R. Gupta, S. H. K. Narayanan, A. A. Chien, P. Hovland, B. Norris, "Exascale Workload Characterization and Architecture Implications," Preprint ANL/MCS-P3013-0712, July 2012. [pdf]
Cherchi A., A. F. Carril, C. Menendez and L. Zamboni, "La Plata Basin Precipitation Variability in Spring: Role of Remote SST Forcing as Simulated by GCM Experiments," Climate Dynamics, April 2013. Also Preprint ANL/MCS-P3016-0712, July 2012. [pdf]
J. Brown, B. Smith, A. Ahmadia, "Achieving Textbook Multigrid Efficiency for Hydrostatic Ice Sheet Flow," Preprint ANL/MCS-P3019-0712, July 2012. [pdf]
V. M. Zavala and M. Anitescu, "Scalable Nonlinear Programming via Exact Differentiable Penalty Functions and Trust-Region Newton Methods," Preprint ANL/MCS-P3014-0712, July 2012. [pdf]
K. Iskra, K. Yoshii, R. Gupta, P. Beckman, "Advanced Virtual Memory for Exascale," Preprint ANL/MCS-P3010-0712, July 2012. [pdf]
A. V. Obabko, P. F. Fischer, T. J. Tautges, V. M. Goloviznin, M. A. Zaytsev, V. V. Chudanov, V. A. Pervichko, A. E. Aksenova, and S. A. Karabasov, "Large Eddy Simulation of Thermo-Hydraulic Mixing in a T-Junction," Preprint ANL/MCS-P3015-0712, July 2012. [pdf]
L. Zamboni, A. Cherchi, A. F. Carril, "Characterization of Heat Waves: An Example for La Plata Basin," Preprint ANL/MCS-P3006-0712, July 2012. [pdf]
R. Jain and T. Tautges, "RGG: Reactor Geometry (&mesh) Generator," Preprint ANL/MCS-P2005-0612, June 2012. [pdf]
L. C. McInnes, B. Smith, H. Zhang, R. Tran Mills, "Hierarchical and Nested Krylov Methods for Extreme-Scale Computing," Preprint ANL/MCS-P2097-0612, June 2012. [pdf]
I. Foster, R. Kettimuthu, S. Martin, S. Tuecke, D. Milroy, B. Palen, T. Hauser, J. Braden, "Campus Bridging Made Easy via Globus Services," Preprint ANL/MCS-P3001-0612, June 2012. [pdf]
J. Dinan, D. Goodell, W. Gropp, R. Thakur, P. Balaji, "Efficient Multithreaded Context ID Allocation in MPI*," Preprint ANL/MCS-P3004-0612, June 2012. [pdf]
T. Heyn, M. Anitescu, A. Tasora, D. Negrut, "Using Krylov Subspace and Spectral Methods for Solving Complementarit Problems in Many-Body Contact Dynamics Simulation," Preprint ANL/MCS-P2099-0612, June 2012. [pdf]
T. Peterka, J. Kwan, A. Pope, H. Finkel, K. Heitmann, S. Habib, "Meshing the Universe: Identifying Voids in Cosmological Simulations Through in Situ Parallel Voronoi Tessellation," Preprint ANL/MCS-P2087-0512, May 2012. [pdf]
Z. Insepov and R. J. Miller, "Activation of Nanoflows for Fuel Cells," Preprint ANL/MCS-P2081-0512, May 2012. [pdf]
T. Peterka and R. Ross, "Versatile Communication Algorithms for Data Analysis," Preprint ANL/MCS-P2080-0512, May 2012. [pdf]
B. Adams, Z. Insepov, J. Norem, "Simulations of Fast X-Ray Detectors Based on Multichannel Plates," Preprint ANL/MCS-P2090-0512, May 2012. [pdf]
F. X. Giraldo, J. F. Kelly, E. M. Constantinescu, "Implicit-Explicit Formulations of a Three-Dimensional Nonhydrostatic Unified Model of the Atmosphere (NUMA)," Preprint ANL/MCS-P2083-0512, May 2012. [pdf]
Y. Peng, C. Knight, P. Blood, L. Crosby, G. A. Voth, "Extending Parallel Scalability of LAMMPS and Multiscale Reactive Molecular Simulations," Preprint ANL/MCS-P2085-0512, May 2012. [pdf]
D. Kim, J. W. Larson, K. Chiu, "Dynamic Load Balancing for Malleable Model Coupling," Preprint ANL/MCS-P2089-0512, May 2012. [pdf]
D. Kimpe, K. Mohror, A. Moody, B. Van Essen, M. Gokhale, R. Ross, B. R. de Supinski, "Integrated In-System Storage Architecture for High Performance Computing," Preprint ANL/MCS-P2092-0512, May 2012. [pdf]
M. L. Stein, J. Chen, M. Anitescu, "Stochastic Approximation of Score Functions for Gaussian Processes," Preprint ANL/MCS-P2091-0512, May 2012. [pdf]
A. Mametjanov, D. Lowell, C. Ma, B. Norris, "Autotuning Stencil-Based Computations on GPUs," Preprint ANL/MCS-P2094-0512, May 2012. [pdf]
S. M. Aithal, "A Comparative Study of NOx Computation Methods Coupled to Quasi-Dimensional Models in SI Engines.," Preprint ANL/MCS-P2098-0512, May 2012. [pdf]
K. Yoshii, K. Iskra, R. Gupta, P. Beckman, V. Vishwanath, C. Yu, S. Coghlan, "Evaluating Power Monitoring Capabilities on IBM Blue Gene/P and Blue Gene/Q," Preprint ANL/MCS-P2095-0512, May 2012. [pdf]
S. M. Aithal, "Analysis of the Current Signature in a Constant-Volume Combustion Chamber," Preprint ANL/MCS-P2093-0512, May 2012. [pdf]
J. Chen, "On Use of Discrete Laplace Operator for Preconditioning Kernel Matrices," Preprint ANL/MCS-P2076-0412, April 2012. [pdf]
M. Lubin, J. A. Julian Hall, C. G. Petra, M. Anitescu, "Parallel Distributed-Memory Simplex for Large-Scale Stochastic LP Problems," Preprint ANL/MCS-P2075-0412, April 2012. [pdf]
O. Roderick, M. Anitescu, Z. Wang, "Reduced Order Approximations in Uncertainty Analysis of Nuclear Engineering Applications," Preprint ANL/MCS-P2078-0412, April 2012. [pdf]
A. Mahajan, S. Leyffer, C. Kirches, "Solving Mixed-Integer Nonlinear Programs by QP-Diving," Preprint ANL/MCS-P2071-0312, March 2012. [pdf]
T. J. Tautges, J. A. Kraftcheck, N. Bertram, V. Sachdeva, and J. Magerlein, "Mesh Interface Resolution and Ghost Exchange in a Parallel Mesh Representation," Proceedings of Workshop on Large-Scale Parallel PRocessing, Shanghai, China, May 2012. Also Preprint ANL/MCS-P2058-0312, March 2012. [pdf][view online]
V. M. Zavala, "Real-Time Resolution of Conflicting Objectives in Building Energy Management: An Utopia-Tracking Approach," Preprint ANL/MCS-P2056-0312, March 2012. [pdf]
J. M. Wozniak, T. G. Armstrong, K. Maheshwari, E. L. Lusk, D. S. Katz, M. Wilde, I. T. Foster, "Turbine: A Distributed-Memory Dataflow Engine for Extreme-Scale Many-Task Applications," Proceedings SWEET 2012, Scottsdale, AZ, May 2012. Also Preprint ANL/MCS-P2057-0312, March 2012. [pdf][view online]
B. Smith, L. C. McInnes, E. Constantinescu, M. Adams, S. Balay, J. Brown, M. Knepley, H. Zhang, "PETSc's Software Strategy for the Design Space of Composable Extreme-Scale Solvers," DOE Exascale Research Conference, Portland, OR, April 2012. Also Preprint ANL/MCS-P2059-0312, March 2012. [pdf]
J. W. Larson, "Visualizing Climate Variability with Time-Dependent Probability Density Functions, Detecting it with Information Theory," Procedia Computer Science, vol. 9, June 2012, pp. 917-926. Also Preprint ANL/MCS-P2069-0312, March 2012. [pdf][view online]
N. Liu, J. Cope, P. Carns, C. Carothers, R. Ross, G. Grider, A. Crume, C. Maltzahn, "On the Role of Burst Buffers in Leadership-Class Storage Systems," Proceedings of MSST/SNAPI 2012, Pacific Grove, CA, April 2012. Also Preprint ANL/MCS-P2070-0312, March 2012. [pdf][view online]
D. Kimpe, P. Carns, K. Harms, J. M. Wozniak, S. Lang, R. Ross, "AESOP: Expressing Concurrency in High-Performance System Software," Preprint ANL/MCS-P2068-0312, March 2012. [pdf]
N. Liu, J. Cope, P. Carns, C. Carothers, R. Ross, G. Grider, A. Crume, C. Maltzahn, "On the Role of Burst Buffers in Leadership-Class Storage Systems," Proceedings of MSST/SNAPI 2012, 2012. Also Preprint ANL/MCS-P2070-0312, March 2012. [pdf][view online]
J. Akerley, M. Greiner, A. Obabko, P. Fischer, "Flow Destabilization and Heat Transfer Augmentation in an Array of Grooved Passages with Developing Flow," Preprint ANL/MCS-P2061-0312, March 2012. [pdf]
Z. Insepov, J. Rest, A. M. Yacout, B. Ye, D. Yun, A. Y. Kuksin, G. E. Norman, V. V. Stegailov, A. V. Yanilkin, "Atomistic and Kinetic Simulations of Radiation Damage in Molybdenum," Preprint ANL/MCS-P2073-0312, March 2012. [pdf]
J. Fu, M. Min, R. Latham, C. D. Carothers, "I/O Threads to Reduce Checkpoint Blocking for an Electromagnetics Solver on Blue Gene/P and Cray XK6," Preprint ANL/MCS-P2074-0312, March 2012. [pdf]
J. J. More and S. M. Wild, "Do You Trust Derivatives or Differences?*," Preprint ANL/MCS-P2067-0312, March 2012. [pdf]
D. Buntinas, "Scalable Distributed Consensus to Support MPI Fault Tolerance," Lecture Notes in Computer Science, vol. 6960, Springer, September 2011, pp. 325-328. Also Preprint ANL/MCS-P2027-0212, February 2012. [pdf]
J. Dinan, P. Balaji, J. R. Hammond, S. Krishnamoorthy, V. Tipparaju, "Supporting the Global Arrays PGAS Model Using MPI One-Sided Communication," Preprint ANL/MCS-P2023-0212, February 2012. [pdf]
J. Jenkins, P. Balaji, J. Dinan, N. F. Samatova, R. Thakur, "Enabling Fast, Non contiguous GPU Data Movement in Hybrid MPI+GPU Environments," Preprint ANL/MCS-P2028-0212, February 2012. [pdf]
R. Kettimuthu, L. Lacinski, M. Link, K. Pickett, S. Tuecke, I. Foster, "Instant GridFTP," Preprint ANL/MCS-P2052-0212, February 2012. [pdf]
S. Xiao, P. Balaji, Q. Zhu, R. Thakur, S. Coghlan, H. Lin, G. Wen, J. Hong, W. Feng, "VOCL: An Optimized Environment for Transparent Virtualization of Graphics Processing Units," Preprint ANL/MCS-P2029-0212, February 2012. [pdf]
Z. Insepov, S. V. Starikov, D. Yun, A. M. Yacout, "Multiscale Simulation Models of Xe Bubble Formation in Irradiated Mo," Preprint ANL/MCS-P2047-0212, February 2012. [pdf]
A. Kannan and S. M. Wild, "Benefits of Deeper Analysis in Simulation-Based Groundwater Optimization Problems," Preprint ANL/MCS-P2043-0212, February 2012. [pdf]
F. M. Hoffman, J. W. Larson, R. T. Mills, B. J. Brooks, A. R. Ganguly, W. W. Hargrove, J. Huang, J. Kumar, R. R. Vatsavai, "Data Mining in Earth System Science (DMESS 2011)," Procedia Computer Science, vol. 4, June 2011, pp. 1450-1455. Also Preprint ANL/MCS-P2046-0212, February 2012. [pdf][view online]
A. Wilke, J. Wilkening, E. M. Glass, N. L. Desai, F. Meyer, "Porting the MG-RAST Metagenomic Data Analysis Pipeline to the Cloud," Concurrency and Computation: Practice & Experience, vol. 23, no. 17, December 2011, pp. 2250-2257. Also Preprint ANL/MCS-P2050-0212, February 2012. [pdf][view online]
J. M. Salazar, U. Diwekar, E. Constantinescu, and V. M. Zavala, "Stochastic Optimization Approach to Water Management in Cooling-Constrained Power Plants," Preprint ANL/MCS-P2026-0212, February 2012. [pdf]
A. Wilke, T. Harrison, J. Wilkening, D. Field, E. M. Glass, N. Kyrpides, K. Mavrommatis, F. Meyer, "The M5nr: A Novel Non-Redundant Database Containing Protein Sequences and Annotations from Multiple Sources and Associated Tools," Preprint ANL/MCS-P2044-0212, February 2012. [pdf]
T. G. Armstrong, J. M. Wozniak, M. Wilde, K. Maheshwari, D. S. Katz, M. Ripeanu, E. L. Lusk, I. T. Foster, "ExM: High Level Dataflow Programming for Extreme-Scale Systems," Proceedings of HotPar'12, 2012. Also Preprint ANL/MCS-P2045-0212, February 2012. [pdf][view online]
Z. Insepov, A. Kuksin, J. Rest, S. Starikov, A. Yanilkin, A. M. Yacout, B. Ye, D. Yun, "Simulation of Ion Irradiation of Nuclear Materials and Comparison with Experiment," Preprint ANL/MCS-P2051-0212, February 2012. [pdf]
P. Balaji, D. Buntinas, D. Kimpe, "Fault Tolerance Techniques for Scalable Computing," Preprint ANL/MCS-P2037-0212, February 2012. [pdf]
N. Goldberg, S. Leyffer, T. Munson, "A New Perspective on Convex Relations of Sparse SVM," Preprint ANL/MCS-P2049-0212, February 2012. [pdf]
N. Goldberg, S. Leyffer, I. Safro, "Optimal Response to Epidemics and Cyber Attacks in Networks," Preprint ANL/MCS-P1992-0112, January 2012. [pdf]
P. Balaprakash, S. M. Wild, P. D. Hovland, "An Experimental Study of Global and Local Search Algorithms in Empirical Performance Tuning," 10th International Meeting on High-Performance Computing for Computational Science (VECPAR 2012), 2012. Also Preprint ANL/MCS-P1995-0112, January 2012. [pdf]
J. Chen, P. Hovland, T. Munson, J. Utke, "An Integer Programming Approach to Optimal Derivative Accumulation," Preprint ANL/MCS-P1994-0112, January 2012. [pdf]
A. Mametjanov, B. Norris, X. Zeng, B. Drewniak, J. Utke, M. Anitescu, P. Hovland, "Applying Automatic Differentiation to the Community Land Model," Advances in Algorithmic Differentiation, Proceedings of the 6th International Conference on Automatic Differentiation (AD'12), vol. 87, Fort Collins, CO, Springer, January 2012, pp. 47-57. Also Preprint ANL/MCS-P1993-0112, January 2012. [pdf]
S. H. K. Narayanan, B. Norris, P. Hovland, A. Gebremedhin, "Implementation of Partial Separability in a Source-to-Source Transformation AD Tool," Proceedings of AD2012, the 6th International Conference on Automatic Differentiation, 2012. Also Preprint ANL/MCS-P1997-0112, January 2012. [pdf]
Kim, S. J.; Woo Son, S.; Kandemir, M.; Liao, W.; Thakur, R.; Choudhary, A., "Dynamic Tracing of Parallel I/O Activity in HPC Applications," Preprint ANL/MCS-P2007-0112, January 2012. [pdf]
J. A. Reed, J. Utke, H. S. Abdel-khalik, "Combining Automatic Differentiation Methods for High Dimensional Nonlinear Models," Preprint ANL/MCS-P2014-0112, January 2012. [pdf]
Laurent Hascoet and Jean Utke, "Handling Pointers and Dynamic Memory," Preprint ANL/MCS-P2013-0112, January 2012. [pdf]
H. Cole-Mullen, A. Lyons, J. Utke, "Storing Versus Recomputation on Multiple DAGs," Preprint ANL/MCS-P2015-0112, January 2012. [pdf]
I. Safro, P. Sanders, C. Schulz, "Advanced Coarsening Schemes for Graph Partitioning," Experimental Algorithms, Lecture Notes in Computer Science, vol. 7276, Bordeaux, France, Springer-Verlag, June 2012, pp. 369-380. Also Preprint ANL/MCS-P2016-0112, January 2012. [pdf][view online]
L. Zamboni, A. Cherchi, M. Barreiro, F. Kurcharski, "Dynamic of the Impact of ENSO Flavors on Precipitation over La Plata Basin," Preprint ANL/MCS-P2009-0112, January 2012. [pdf]
E. Gawlik, T. Munson, J. Sarich, S. M. Wild, "The TAO Linearly-Constrained Augmented Lagrangian Method for PDE-Constrained Optimization," Preprint ANL/MCS-P2003-0112, January 2012. [pdf]
M. McCourt, T. D. Rognlien, L. C. McInnes, H. Zhang, "Improving Parallel Scalability for Edge Plasma Transport Simulations with Neutral Gas Species," Preprint ANL/MCS-P2018-0112, January 2012. [pdf]
J. Brown, M. G. Knepley, D. A. May, L. C. McInnes, B. Smith, "Composable LInear Solvers for Multiphysics," Preprint ANL/MCS-P2017-0112, January 2012. [pdf]
N. A. Best, J. W. Elliott, I. T. Foster, "Synthesis of a Complete Land Use/Land Cover Data Set for Conterminous United States," Preprint ANL/MCS-P1998-0112, January 2012. [pdf]
T. Munson, J. Sarich, S. Wild, S. Benson, L. C. McInnes, "TAO 2.0 Users Manual," Technical Memorandum ANL/MCS-TM-322, January 2012. [pdf]
S. Mohanty, R. Jain, S. Majumdar, T. J. Tautges, and M. Srinivasan, "Coupled Field-Structural Analysis of HTGR Fuel Brick Using Abaqus," Preprint ANL/MCS-P2008-0112, January 2012. [pdf]
K. A. Pruitt, S. Leyffer, A. M. Newman, and R. J. Braun, "Optimal Design and Dispatch of Distributed Generation Systems," Preprint ANL/MCS-P2004-0112, January 2012. [pdf]
J. Brown, M. G. Knepley, D. A. May, L. C. McInnes, B. Smith, "Composable Linear Solvers for Multiphysics," Preprint ANL/MCS-P2017-0112, January 2012. [pdf]
D. Kim, J. W. Larson, K. Chiu, "Malleable Model Coupling with Prediction," Proceedings of the The 12th IEEE/ACM International Symposium on Cluster, Cloud and Grid Computing (CCGRID 2012), Ottawa, Canada, Proceedings of the The 12th IEEE/AC, May 2012. Also Preprint ANL/MCS-P1984-1211, December 2011. [pdf][view online]
J. A. Insley, U. Paliath, A. Gupta, "Turbulent Mixing Noise from Jet Exhaust Nozzles," Proceedings of the 2011 companion on High Performance Computing Networking, Storage, and Analysis Companion, Seattle, Washington, ACM, November 2012, pp. 143-144. Also Preprint ANL/MCS-P1990-1211, December 2011. [pdf][view online]
A. N. Adhikari, J. Peng, M. Wilde, J. Xu, K. F. Freed, T. R. Sosnick, "Modeling Large Regions in Proteins: Applications to Loops, Termini and Folding," Protein Science, vol. 21, no. 1, January 2012, pp. 107-121. Also Preprint ANL/MCS-P1976-1111, November 2011. [pdf]
M. Kortelainen, J. McDonnell, W. Nazarewicz, P.-G. Reinhard, J. Sarich, N. Schunck, M.V. Stoitsov, S.M. Wild, "Nuclear Energy Density Optimization: Large Deformations," Phys. Rev. C, vol. 85, no. 2, , pp. 024304. Also Preprint ANL/MCS-P1977-1111, November 2011. [pdf][view online]
N. Liu, C. Carothers, J. Cope, P. Carns, R. Ross, "Model and Simulation of Exascale Communication Networks," Journal of Simulation, March 2012. Also Preprint ANL/MCS-P1937-0911, September 2011. [pdf][view online]
T. O. Delmont, E. Prestat, K. P. Keegan, M. Faubladier, P. Robe, I. M. Clark, E. Pelletier, P. R. Hirsch, F. Meyer, J. A. Gilbert, D. Le Paslier, P. Simonet, and T. M. Vogel, "Structure, Fluctuation and Magnitude of a Natural Grassland Soil Metagenome," ISME Journal, February 2012. Also Preprint ANL/MCS-P1945-0911, September 2011. [pdf][view online]
J. Leigh, A. Johnson, L. Renambot, V. Vishwanath, T. Peterka, N. Schwarz, "Visualization of Large-Scale Distributed Data," Data Intensive Distributed Computing, 2012. Also Preprint ANL/MCS-P1907-0611, June 2011. [pdf]
J. Larson and S. M. Wild, "Non-intrusive Termination of Noisy Optimization," Optimization Methods and Software, 2012. Also Preprint ANL/MCS-P1887-0511, May 2011. [pdf]
E. M. Glass and F. Meyer, "Analysis of Metagenomics Data," Bioinformatics for High Throughput Sequencing, Springer, January 2012. Also Preprint ANL/MCS-P1856-0311, March 2011. [pdf]
E. M. Constantinescu and A. Sandu, "Extrapolated Multirate Methods for Differential Equations with Multiple Time Scales," Journal of Scientific Computing, Springer US, October 2012, pp. 1-17. Also Preprint ANL/MCS-P1796-1010, October 2010. [pdf]
