Publications

Darius Buntinas, Guillaume Mercier, and William Gropp, "Data Transfers Between Processes in an SMP System: Performance Study and Application to MPI," Preprint ANL/MCS-P1306-1105, November 2005. [pdf]
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D. Buntinas, G. Mercier, and W. Gropp, "Design and Evaluation of Nemesis, a Scalable, Low-Latency, Message-Passing Communication Subsystem," Technical Memorandum ANL/MCS-TM-292, November 2005. [pdf]
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M. Anitescu, D. Negrut, P. Zapol, A. El-Azab, "A Note on the Regularity of Reduced Models Obtained by Quasi-continuum-like Approaches," Preprint ANL/MCS-P1303-1105, November 2005. [pdf]
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J. Lee, R. Ross, S. Atchley, M. Beck, R. Thakur, "MPI-IO/L: Efficient Remote I/O for MPI-IO via Logistical Networking," Preprint ANL/MCS-P1304-1105, November 2005. [pdf]
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D. Buntinas, G. Mercier, and W. Gropp, "Data Transfers Between Processes in a SMP System: Performance Study and Application to MPI," Preprint ANL/MCS-P1306-1105, November 2005. [pdf]
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L. Meyer, J. Annis, M. Wilde, M. Mattoso, and I. Foster, "Planning Spatial Workflows to Optimize Grid Performance," Preprint ANL/MCS-P1308-1105, November 2005. [pdf]
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S. S. Varghese, S. H. Frankel, P. F. Fischer, "Direct Numerical Simulation of Stenotic Flows. Part 1. Steady Flow," Preprint ANL/MCS-P1309-1105, November 2005. [pdf]
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S. S. Varghese, S. H. Frankel, P. D. Fischer, "Direct Numerical Simulation of Stenotic Flows. Part 2. Pulsatile Flow," Preprint ANL/MCS-P1310-1105, November 2005. [pdf]
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E. M. Gertz and J. D. Griffin, "Support Vector Machine Classifiers for Large Data Sets," Technical Memorandum ANL/MCS-TM-289, October 2005. [pdf]
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M. Yan, G. Leaf, H. Kaper, R. Camley, and M. Grimsditch, "Spin Wave Modes in a Cobalt Square Vortex," Preprint ANL/MCS-P1293-1005, October 2005. [pdf]
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X. Zhang, J. L. Freschl, and J. M. Schopf, "Scalability Analysis of Three Monitoring and Information Systems: MDS2, R-GMA, and Hawkeye," Preprint ANL/MCS-P1294-1005,, October 2005. [pdf]
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M. G. Knepley and D. A. Karpeev, "Flexible Representation of Computational Meshes," Preprint ANL/MCS-P1295-1005, October 2005. [pdf]
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N. Maltsev, E. Glass, D. Sulakhe, A. Rodriguez, M. H. Syed, T. Bompada, Y. Zhang, and M. D, "PUMA2 - Grid-Based High-Throughput Analysis of Genomes and Metabolic Pathway," Preprint ANL/MCS-P1296-1005, October 2005. [pdf]
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G. Leaf, H. Kaper, M. Yan, V. Novosad, P. Vavassori, R. E. Camley, M. Grimsditch, "Dynamic Origin of Stripe Domains," 2005, . Also Preprint ANL/MCS-P1299-1005, October 2005. [pdf]
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D. Buntinas and W. Gropp, "Understanding the Requirements Imposed by Programming Model Middleware on a Common Communication Subsystem," Technical Memorandum ANL/MCS-TM-277, September 2005. [pdf]
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K. Amin, G. von Laszewski, M. Sosonkin, A. R. Mikler, and M. Hategan, "Ad Hoc Grid Security Infrastructure," Preprint ANL/MCS-P1286-0905, September 2005.
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R. Padmanabhan, W. McCune, and R. Veroff, "Lattice Laws Forcing Distributivity Under Unique Complementation," Preprint ANL/MCS-P1287-0905, September 2005. [pdf]
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N.Desai, R.Bradshaw, S.Matott, S.Bittner, S.Coghlan, R.Evard, C.Lueninghoener, T.Leggett, J.-P.Navarro, G.Rackow, C.Stacey, T. Stacey, "A Case Study in Configuration Management Tool Deployment," Preprint ANL/MCS-P1288-0905, September 2005. [pdf]
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S. J. Benson and Y. Ye, "DSDP5: Software for Semidefinite Programming," 2005, . Also Preprint ANL/MCS-P1289-0905, September 2005. [pdf]
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S. Leyffer, "A Complementarity Constraint Formulation of Convex Multiobjective Optimization Problems," Preprint ANL/MCS-P1290-0905, September 2005. [pdf]
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I. Foster, V. Nefedova, L. Liming, R. Ananthakrishnan, R. Madduri, L. Pearlman, O. Mulmo, M. Ahsant, "Streamlining Grid Operations: Definition and Deployment of a Portal-based User Registration Service," Preprint ANL/MCS-P1291-0905, September 2005. [pdf]
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S. J. Benson, "Parallel Semidefinite Programming and Combinatorial Optimization," Preprint ANL/MCS-P1292-0905, September 2005. [pdf]
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S. Leyffer, "The Return of the Active Set Method," Preprint ANL/MCS-P1277-0805, August 2005. [pdf]
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D. Negrut, R. Rampalli, G. Ottarsson, A. Sajdak, "On the use of the HHT Method in the Context of Index 3 Differential Algebraic Equations of Multibody Dynamics," Preprint ANL/MCS-P1278-0805, August 2005. [pdf]
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S. Bhowmick, D. Kaushik, L. McInnes, B. Norris, P. Raghavan, "Parallel Adaptive Solvers in Compressible PETSc-FUN3D Simulations," Preprint ANL/MCS-P1279-0805, August 2005. [pdf]
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D. Negrut, M. Anitescu, T. Munson, and P. Zapol, "Simulating Nanoscale Processes in Solids using DFT and the Quasicontinuum Method," Preprint ANL/MCS-P1280-0805, August 2005. [pdf]
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L. Yang, J. M. Schopf, C. L. Dumitrescu, and I. Foster, "Statistical Data Reduction for Efficient Application Performance Monitoring," Preprint ANL/MCS-P1281-0805, August 2005. [pdf]
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J. G. Kim, E. C. Hunke, and W. H. Lipscomb, "A Sensitivity Analysis and Parameter Tuning Scheme for Global Sea Ice Modeling," Preprint ANL/MCS-P1282-0805, August 2005. [pdf]
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L. McInnes, B. Norris, I. Veljkovic, "Computational Quality of Service in Parallel CFD," Preprint ANL/MCS-P1283-0805, August 2005. [pdf]
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T. S. Munson and P. D. Hovland, "The FeasNewt Benchmark," Preprint ANL/MCS-P1284-0805, August 2005. [pdf]
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N. Desai, E. Lusk, R. Bradshaw, "MPISH2: Unix Integration for MPI Programs," Preprint ANL/MCS-P1269-0705, July 2005. [pdf]
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D. Buntinas and W. Gropp, "Designing a Common Communication Subsystem," Preprint ANL/MMCS-P1270-0705, July 2005. [pdf]
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R. Latham, R. Ross, R. Thakur, B. Toonen, "Implementing MPI-IO Shared File Pointers without File System Support," Preprint ANL/MCS-P1272-0705, July 2005. [pdf]
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C. Falzone, A. Chan, E. Lusk, and W. Gropp, "Collective Error Detection for MPI Collective Operations," Preprint ANL/MCS-P1273-0705, July 2005.
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B. Allcock, A. Chervenak, I. Foster, C. Kesselman, M. Livny, "Data Grid Tools: Enabling Science on Big Distributed Data," Preprint ANL/MCS-P1274-0705, July 2005. [pdf]
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W. Allcock, J. Bresnahan, R. Kattimuthu, M. Link, C. Dumitrescu, I. Raicu, I. Foster, "The Globus Striped GridFTP Framework and Server," Preprint ANL/MCS-P1275-0705, July 2005. [pdf]
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B. Norris, "Software Architecture Issues in Scientific Component Development," Preprint ANL/MCS-P1276-0705, July 2005. [pdf]
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W. E. Allcock, "Programming with the Globus Toolkit GridFTP Client Library," Preprint ANL/MCS-P1285-0705, July 2005. [pdf]
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M. M. Strout, J. Mellor-Crummey, P. Hovland, "Representation-Independent Program Analysis," Preprint ANL/MCS-P1255-0605, June 2005. [pdf]
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G. von Laszewski and D. Kodeboyina, "A Repository Service for Grid Workflow Components," Preprint ANL/MCS-P1256-0605, June 2005. [pdf]
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K. Amin and G. von Laszewski, "Quality Assured Ad Hoc Grids," Preprint ANL/MCS-P1257-0605, June 2005. [pdf]
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D. E. Stewart and M. Anitescu, "Optimal Control of Systems with Discontinuous Differential Equations," Preprint ANL/MCS-P1258-0605, June 2005. [pdf]
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G. von Laszewski and M. Hategan, "Workflow Concepts of the Java CoG Kit," J. of Grid Comput., vol. 3, no. 3, Springer Netherlands, 2005, pp. 239-258. Also Preprint ANL/MCS-P1259-0605, June 2005. [pdf]
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T. Munson, "Optimizing the Quality of Mesh Elements," Preprint ANL/MCS-P1260-0605, June 2005. [pdf]
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Y. Zhao, M. Wilde, I. Foster, J. Voeckler, J. Dobson, T. Jordan, E. Quigg, "Virtual Data Grid Middleware Services for Data-Intensive Science," Preprint ANL/MCS-P1261-0605, June 2005. [pdf]
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R. Ross, R. Thakur, A. Choudhary, "Achievements and Challenges for I/O in Computational Science," J. Phys.: Conf. Ser., vol. 16, 2005, pp. 501-509. Also Preprint ANL/MCS-P1262-0605, June 2005.
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H. Zhang, B. Smith, M. Sternberg, and P. Zapol, "SIPs: Shift-and-Invert Parallel Spectral Transformations," ACM TOMS, vol. 33, no. 2, ACM, 2005, . Also Preprint ANL/MCS-P1263-0605, June 2005. [pdf]
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P. D. Hovland, B. Norris, M. M. Strout, S. Bhowmick, and J. Utke, "Sensitivity Analysis and Design Optimization through Automatic Differentiation," Preprint ANL/MCS-P1264-0605, June 2005. [pdf]
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L. Wos and M. Spinks, "The Arrival of Automated Reasoning," Preprint ANL/MCS-P1265-0605, June 2005. [pdf]
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W. Gropp and R. Thakur, "An Evaluation of Implementation Options for MPI One-Sided Communication," Preprint ANL/MCS-P1266-0605, June 2005. [pdf]
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P. F. Fischer,, "Anistropic Diffusion in a Toroidal Geometry," J. Phys. Conf. Series, vol. 16, 2005, pp. 446-455. Also Preprint ANL/MCS-P1268-0605, June 2005. [pdf]
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M. Anitescu and W. J. Layton, "Sensitivities in Large Eddy Simulation and Improved Estimates of Turbulent Flow Functionals," SIAM J. Sci. Comput., vol. 29, no. 4, Society for Industrial and Applied Mathematics, 2005, pp. 1650-1667. Also Preprint ANL/MCS-P1251-0505, May 2005. [pdf]
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G. von Laszewski, "The Grid-Idea and Its Evolution," Preprint ANL/MCS-P1253-0505, May 2005. [pdf]
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C. S. Verma, P. F. Fischer, S. E. Lee, and F. Loth, "An All-Hex Meshing Strategy for Bifurcation Geometries in Vascular Flow Simulation," 2005, . Also Preprint ANL/MCS-P1254-0505, May 2005. [pdf]
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M. Anitescu, P. Tseng, S. Wright,, "Elastic-Mode Algorithms for Mathematical Programs with Equilibrium Constraints: Global Convergence and Stationarity Properties," 2005, . Also Preprint ANL/MCS-P1242-0405, April 2005. [pdf]
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S. Leyffer and T. Munson, "Solving Multi-Leader-Follower Games," Preprint ANL/MCS-P1243-0405, April 2005. [pdf]
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D. Rosenberg, A. Fournier, P. Fischer, and N. Pouquet, "Geophysical-Astrophysical Spectral-Element Adaptive Refinement (GASpAR): Object-oriented h-adaptive code for geophysical fluid dynamics simulation," 2005, . Also Preprint ANL/MCS-P1245-0405, April 2005. [pdf]
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M. Anitescu, "Mathematical Programs with Equilibrium Constraints and Applications to Control," Preprint ANL/MCS-P1247-0405, April 2005. [pdf]
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J. M. Schopf, M. D'Arcy, N. Miller, L. Pearlman, I. Foster, C. Kesselman, "Monitoring and Discovery in a Web Services Framework: Functionality and Performance of the Globus Toolkit's MDS4," 2005, . Also Argonne Report ANL/MCS-P1248-0405, April 2005. [pdf]
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I. Foster, "Service-Oriented Science," Preprint ANL/MCS-P1249-0405, April 2005. [pdf]
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K. Amin, G. von Laszewski, M. Hategan, R. Al-Ali, O. Rana, D. Walker, "An Abstraction Model for a Grid Execution Framework," Preprint ANL/MCS-P1250-0405, April 2005. [pdf]
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L. Yang, J. M. Schopf, and I. Foster,, "Improving Parallel Data Transfer Times Using Predicted Variances in Shared Networks," Preprint ANL/MCS-P1234-0305, March 2005. [pdf]
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R. Ross, R. Latham, W. Gropp, R. Thakur, B. Toonen, "Implementing MPI-IO Atomic Mode Without File System Support," Preprint ANL/MCS-P1235-0305, March 2005. [pdf]
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H. G. Kaper and S. Tipei, "DISSCO: A Unified Approach to Sound Synthesis and Composition," Preprint ANL/MCS-P1236-0305, March 2005. [pdf]
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M. Hereld and R. L. Stevens, "Pixel-Aligned Warping for Multi-Projector Tiled Displays," Preprint ANL/MCS-P1237-0305, March 2005. [pdf]
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T. Disz, M. Kubal, R. Olson, R. Overbeek, R. Stevens, "Challenges in Large Scale Distributed Computing: Bioinformatics," Preprint ANL/MCS-P1238-0305, March 2005. [pdf]
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L. F. Diachin, P. Knupp, T. Munson, and S. Shontz, "A Comparison of Two Optimization Methods for Mesh Quality Improvement," Preprint ANL/MCS-P1239-0305, March 2005. [pdf]
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A. P. Craig, R. L. Jacob, B. Kauffman, T. Bettge, J. Larson, E. Ong, C. Ding, Y. He, "Cp16: The New Extensible, High-Performance Parallel Coupler for the Community Climate System Model," Preprint ANL/MCS-P1222-0205, February 2005. [pdf]
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A. Zagaris, H. G. Kaper, T. J. Kaper, "Two Perspectives on Reduction of Ordinary Differential Equations," Preprint ANL/MCS-P1223-0205, February 2005. [pdf]
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E. Lusk, N. Desai, R. Bradshaw, A. Lusk, R. Butler, "An Interoperability Approach to System Software, Tools, and Libraries for Clusters," Preprint ANL/MCS-P1224-0205, February 2005. [pdf]
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R. Jacob, J. Larson, and E. Ong, "MxN Communication and Parallel Interpolation in CCSM3 Using the Model Coupling Toolkit," Preprint ANL/MCS-P1225-0205, February 2005. [pdf]
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U. Naumann and J. Utke, "Source Templates for the Automatic Generation of Adjoint Code through Static Call Graph Reversal," Preprint ANL/MCS-P1226-0205, February 2005. [pdf]
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D. Sulakhe, A. Rodriguez, M. D, "GNARE: An Environment for Grid-Based High-Throughput Genome Analysis," Proc. CCGRID05, IEEE, 2005, pp. 455-462. Also Preprint ANL/MCS-P1227-0205, February 2005. [pdf]
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H. Lee, M. Hereld, R. Stevens, W. van Drongelen, "Epileptiform Activity Patterns in Coupled Neuronal Networks," 2005, . Also Preprint ANL/MCS-P1228-0205, February 2005. [pdf]
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J. Utke, U. Naumann, M. Fagan, N. Tallent, M. Strout, P. Heimbach, C. Hill, and C. Wunsch, "OpenAD/F: A Modular, Open-Source Tool for Automatic Differentiation of Fortran Codes," 2005, . Also Preprint ANL/MCS-P1230-0205, February 2005. [pdf]
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K. Keahey, I. Foster, T. Freeman, X. Zhang, and D. Galron, "Virtual Workspaces in the Grid," Preprint ANL/MCS-P1231-0205, February 2005. [pdf]
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R. Thakur, W. Gropp, B. Toonen, "Optimizing the Synchronization Operations in MPI One-Sided Communication," Preprint ANL/MCS-P1232-0205, February 2005. [pdf]
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M. Min, "Disctoninuous Galerkin Method Based on Quadrilateral Mesh for Maxwell's Equations," Preprint ANL/MCS-P1233-0205, February 2005. [pdf]
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W. McCune, R. Padmanabhan, M. A. Rose, and R. Veroff, "Automated Discovery of Single Axioms for Ortholattices," Algebra Universalis, vol. 52, no. 4, Birkhauser Basel, 2005, pp. 541-549. Also Preprint ANL/MCS-P1218-0105, January 2005. [pdf]
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N. Desai, A. Lusk, R. Bradshaw, and E. Lusk, "MPISH: A Parallel Shell for MPI Programs," Preprint ANL/MCS-P1218-0105, January 2005. [pdf]
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M. M. Strout, B. Kreaseck, and P. Hovland, "Data-Flow Analysis for MPI Programs," Preprint ANL/MCS-P1220-0105, January 2005. [pdf]
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B. Norris and I. Veljkovic, "Performance Monitoring and Analysis Components in Adaptive PDE-Based Simulations," Preprint ANL/MCS-P1221-0105, January 2005. [pdf]
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G. von Laszewski and M. Sosonkin, "A Grid Certificate Authority for Community and Ad-hoc Grids," Preprint ANL/MCS-P1216-0105, January 2005. [pdf]
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P. F. Fischer and C. P. Tzanos, "Filtered Simulations of Turbulence in a Reactor Rod Bundle Flow," Preprint ANL/MCS-P1213-0105, January 2005. [pdf]
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N. Desai, A. Lusk, R. Bradshaw, and E. Lusk, "MPISH: A Parallel Shell for MPI Programs," Preprint ANL/MCS-P1219-0105, January 2005. [pdf]
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J. N. Lyness and T. Sorevik, "Five-Dimensional K-Optimal Lattice Rules," Preprint ANL/MCS-P1244-0105, January 2005. [pdf]
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M. Beeson, R. Veroff, and L. Wos, "Double-Negation Elimination in Some Propositional Logics," Studia Logica, vol. 80, no. 2, 2002, pp. 195-234. Also Preprint ANL/MCS-P1014-1202, December 2002. [pdf]
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L. Wos, "The Flowering of Automated Reasoning," A Portrait to a Scientist: Logic, AI and Politics, A Festschrift in Honor of J. H. Siekmann, Springer, 2002, . Also Preprint ANL/MCS-P924-0102, January 2002. [pdf]
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