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2013

A. Wilke, Glass, E. M., Bischof, J., Braithwaite, D., D'Souza, M., Gerlach, W., Harrison, T., Keegan, K. P., Matthews, H., Paczian, T., Tang, W., Trimble, W. L., Wilkening, J., Desai, N. L., and Meyer, F., “MG-RAST A Technical Report and Manual for Version 3.3.6”, ANL/MCS-TM-333, 2013.
S. Devoid and Desai, N. L., “Poncho: Enabling Smart Administration of Full Private Clouds”, in 27th Large Installation System Administraction Conference, Washington, D.C., 2013.
W. Tang, Wilkening, J., Desai, N. L., Gerlach, W., Wilke, A., and Meyer, F., “A Scalable Data Analysis Platform for Metagenomics”, in The Proceedings of the 2013 IEEE International Conference on Big Data, Santa Clara, CA, 2013.
Z. Zhou, Lan, Z., Tang, W., and Desai, N. L., “Reducing Energy Costs for IBM Blue Gene/P via Power-Aware Job Scheduling”, in Job Scheduling Strategies for Parallel Processors Workshop (JSSPP 2013), Boston, MA, 2013.
A. Wilke, Bischof, J., Harrison, T., Brettin, T., D'Souza, M., Gerlach, W., Matthews, H., Paczian, T., Wilkening, J., Glass, E. M., Desai, N. L., and Meyer, F., “A RESTful API for Accessing Microbial Community Data for MG-RAST”, 2013.
A. Wilke, Glass, E. M., Bartels, D., Bischof, J., Braithwaite, D., D'Souza, M., Gerlach, W., Harrison, T., Keegan, K. P., Matthews, H., Kottmann, R., Paczian, T., Tang, W., Trimble, W. L., Yilmaz, P., Wilkening, J., Desai, N. L., and Meyer, F., “A Metagenomics Portal for a Democratized Sequencing World”, Methods enzymol., vol. 531, pp. 487-523, 2013.

2011

L. Ramakrishnan, Campbell, S., Canon, R. S., Declerck, T., Sakrejda, I., Coghlan, S. M., Zbiegiel, P. T., Bradshaw, R., Desai, N. L., and Liu, A., “Magellan: Experiences from a Science Cloud”, in Proc. ScienceCloud2011, San Jose, CA, 2011.
A. Wilke, Wilkening, J., Glass, E. M., Desai, N. L., and Meyer, F., “Porting the MG-RAST Metagenomic Data Analysis Pipeline to the Cloud”, Concurrency and Computation: Practice and Experience, vol. 23, no. 17, pp. 2250-2257, 2011.
W. Tang, Desai, N. L., Vishwanath, V., Buettner, D., and Lan, Z., “Job Coscheduling on Coupled High-End Computing Systems”, in Proc. 40th International Conference on Parallel Processing Workshops, 2011.

2010

J. A. Gilbert, Meyer, F., Antonopoulos, D. A., Balaji, P., C. Brown, T., Brown, C. T., Desai, N. L., Eisen, J. A., Evers, D., Field, D., Feng, W., Huson, D., Jansson, J., Knight, R., Knight, J., Kolker, E., Konstantindis, K., Kostka, J., Kyrpides, N., Mackelprang, R., McHardy, A., Quince, C., Raes, J., Sczyrba, A., Shade, A., and Stevens, R. L., “The Terabase Metagenomics Workshop and the Vision of an Earth Microbiome Project”, Stand. Genomics Sci., vol. 3, no. 3, p. 6, 2010.

2009

P. Balaji, Naik, H., and Desai, N. L., “Understanding Network Saturation Behavior on Large-Scale Blue Gene/P Systems”, in Proceedings of the 2009 15th International Conference on Parallel and Distributed Systems, 2009.
J. Wilkening, Wilke, A., Desai, N. L., and Meyer, F., “Using Clouds for Metagenomics: A Case Study”, in IEEE Cluster 2009, New Orleans, Louisiana, USA, 2009.
N. L. Desai, Buntinas, D., Buettner, D., Balaji, P., and Chan, A., “Improving Resource Availability by Relaxing Network Allocation Constraints on the Blue Gene/P”, in 2009 International Conference on Parallel Processing, Vienna, Austria, 2009.
D. Buettner, Desai, N. L., Lan, Z., and Tang, W., “Fault-Aware Utility-Based Job Scheduling on BlueGene/P Systems”, in 2009 IEEE Conference on Cluster Computing (Cluster 2009), New Orleans, LA, 2009.

2008

N. L. Desai, Bradshaw, R., and Lusk, E. L., “Disparity: Scalable Anomaly Detection for Clusters”, in 37th International Conference on Parallel Processing - Workshops, Portland, OR, 2008.

2007

N. L. Desai, Lusk, E. L., Buettner, D., Cherry, A., and Voran, T., “Simulating Failures on Large-Scale Systems”, in 37th International Conference on Parallel Processing - Workshops, IEEE, 2007.
N. L. Desai, Bradshaw, R., Lueninghoener, C., Cherry, A., Coghlan, S. M., and Scullin, W., “Petascale System Management Experiences”, in Proceedings of the 22nd Large Installation System Administration Conference, San Diego, CA, 2007.
N. L. Desai, Balaji, P., Sadayappan, P., and Islam, M., “Are Nonblocking Networks Really Needed for High-End-Computing Workloads?”, presented at the 12/2007, 2007.
N. L. Desai, Lusk, E. L., Cherry, A., and Voran, T., “The Computer as Software Component: A Mechanism for Developing and Testing Resource Management Software”, in Cluster Computing 2007, Austin, TX, 2007.

2006

N. L. Desai, Bradshaw, R., Hagedorn, J., and Lueninghoener, C., “Directing Change Using Bcfg2,”, 2006.