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2013

A. Wilke et al., MG-RAST A Technical Report and Manual for Version 3.3.6. 2013.
W. Tang, J. Wilkening, N. L. Desai, W. Gerlach, A. Wilke, and F. Meyer, “A Scalable Data Analysis Platform for Metagenomics”, in The Proceedings of the 2013 IEEE International Conference on Big Data, Santa Clara, CA, 2013.
Z. Zhou, Z. Lan, W. Tang, and N. L. Desai, “Reducing Energy Costs for IBM Blue Gene/P via Power-Aware Job Scheduling”, in Job Scheduling Strategies for Parallel Processors Workshop (JSSPP 2013), Boston, MA, 2013.
A. Wilke et al., “A Metagenomics Portal for a Democratized Sequencing World”, Methods enzymol., vol. 531, pp. 487-523, 2013.

2011

L. Ramakrishnan et al., “Magellan: Experiences from a Science Cloud”, in Proc. ScienceCloud2011, San Jose, CA, 2011.
A. Wilke, J. Wilkening, E. M. Glass, N. L. Desai, and F. Meyer, “Porting the MG-RAST Metagenomic Data Analysis Pipeline to the Cloud”, Concurrency and Computation: Practice and Experience, vol. 23, no. 17, pp. 2250-2257, 2011.
W. Tang, N. L. Desai, V. Vishwanath, D. Buettner, and Z. Lan, “Job Coscheduling on Coupled High-End Computing Systems”, in Proc. 40th International Conference on Parallel Processing Workshops, 2011.

2010

J. A. Gilbert et al., “The Terabase Metagenomics Workshop and the Vision of an Earth Microbiome Project”, Stand. Genomics Sci., vol. 3, no. 3, p. 6, 2010.

2009

P. Balaji, H. Naik, and N. L. Desai, “Understanding Network Saturation Behavior on Large-Scale Blue Gene/P Systems”, in Proceedings of the 2009 15th International Conference on Parallel and Distributed Systems, 2009.
J. Wilkening, A. Wilke, N. L. Desai, and F. Meyer, “Using Clouds for Metagenomics: A Case Study”, in IEEE Cluster 2009, New Orleans, Louisiana, USA, 2009.
N. L. Desai, D. Buntinas, D. Buettner, P. Balaji, and A. Chan, “Improving Resource Availability by Relaxing Network Allocation Constraints on the Blue Gene/P”, in 2009 International Conference on Parallel Processing, Vienna, Austria, 2009.
D. Buettner, N. L. Desai, Z. Lan, and W. Tang, “Fault-Aware Utility-Based Job Scheduling on BlueGene/P Systems”, in 2009 IEEE Conference on Cluster Computing (Cluster 2009), New Orleans, LA, 2009.

2008

N. L. Desai, R. Bradshaw, and E. L. Lusk, “Disparity: Scalable Anomaly Detection for Clusters”, in 37th International Conference on Parallel Processing - Workshops, Portland, OR, 2008.

2007

N. L. Desai, R. Bradshaw, C. Lueninghoener, A. Cherry, S. M. Coghlan, and W. Scullin, “Petascale System Management Experiences”, in Proceedings of the 22nd Large Installation System Administration Conference, San Diego, CA, 2007.
N. L. Desai, P. Balaji, P. Sadayappan, and M. Islam, “Are Nonblocking Networks Really Needed for High-End-Computing Workloads?”, presented at the 12/2007, 2007.
N. L. Desai, E. L. Lusk, A. Cherry, and T. Voran, “The Computer as Software Component: A Mechanism for Developing and Testing Resource Management Software”, in Cluster Computing 2007, Austin, TX, 2007.
N. L. Desai, E. L. Lusk, D. Buettner, A. Cherry, and T. Voran, “Simulating Failures on Large-Scale Systems”, in 37th International Conference on Parallel Processing - Workshops, IEEE, 2007.

2006

N. L. Desai, R. Bradshaw, J. Hagedorn, and C. Lueninghoener, Directing Change Using Bcfg2. 2006.

2005

N. L. Desai, A. Lusk, R. Bradshaw, and E. L. Lusk, “MPISH: A Parallel Shell for MPI Programs”, in 19th IEEE International Parallel and Distributed Processing Symposium, Denver, CO, 2005.
N. L. Desai et al., A Case Study in Configuration Management Tool Deployment. 2005.