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2013

J. Chen, Li, T. L. H., and Anitescu, M., “A Parallel Linear Solver for Multilevel Toeplitz Systems with Possibly Several Right-Hand Sides”, 2013.
J. Walker, Merzari, E., Obabko, A. V., Fischer, P. F., and Siegel, A. R., “Accurate Prediction of the Wall Shear Stress in Rod Bundles with the Spectral Element Method at High Reynolds Numbers”, International Journal of Heat and Fluid Flow , 2013.
J. W. Larson and Wild, S. M., “Non-intrusive Termination of Noisy Optimization”, Optimization Methods and Software, vol. 28, no. 5, pp. 993-1011, 2013.

2012

L. Zamboni, Cherchi, A., Barreiro, M., and Kurcharski, F., “Dynamic of the Impact of ENSO Flavors on Precipitation over La Plata Basin”, 2012.
A. Wilke, Harrison, T., Wilkening, J., Field, D., Glass, E. M., Kyrpides, N., Mavrommatis, K., and Meyer, F., “The M5nr: A Novel Non-Redundant Database Containing Protein Sequences and Annotations from Multiple Sources and Associated Tools”, BMC Bioinformatics, vol. 13, no. 1, 2012.
Z. Insepov, Rest, J., Yacout, A. M., Ye, B., Yun, D., Kuksin, A. Y., Norman, G. E., Stegailov, V. V., and Yanilkin, A. V., “Atomistic and Kinetic Simulations of Radiation Damage in Molybdenum”, in Materiasl Research Society (MRS) Proceedings, vol. 1444, 2012.
J. J. More' and Wild, S. M., “Estimating Derivatives of Noisy Simulations”, ACM Transactions on Mathematical Software (TOMS), vol. 38, no. 3, 2012.
L. Curfman McInnes, Smith, B. F., Zhang, H., and R. Mills, T., “Hierarchical and Nested Krylov Methods for Extreme-Scale Computing”, 2012.
V. M. Zavala and Anitescu, M., “Scalable Nonlinear Programming via Exact Differentiable Penalty Functions and Trust-Region Newton Methods”, 2012.
J. M. Wozniak, Armstrong, T. G., Wilde, M., Katz, D. S., Lusk, E. L., and Foster, I. T., “Scalable Data Flow Programming for Many-Task Applications”, 2012.
E. M. Glass and Meyer, F., “Analysis of Metagenomics Data”, Bioinformatics for High Throughput Sequencing, 2012.
S. T. Choi, “Minimal Residual Methods for Complex Symmetric, Skew Symmetric, and Skew Hermitian Systems”, 2012.
M. Anitescu, Chen, J., and Wang, L., “A Matrix-Free Approach for Solving the Parametric Gaussian Process Maximum Likelihood Problem”, SIAM Journal on Scientific Computing, vol. 34, no. 1, pp. A240-A262, 2012.
S. Xiao, Balaji, P., Zhu, Q., Thakur, R., Coghlan, S. M., Lin, H., Wen, G., Hong, J., and Feng, W., “VOCL: An Optimized Environment for Transparent Virtualization of Graphics Processing Units”, in 1st Innovative Parallel Computing, San Jose, CA, 2012.
J. W. Larson, “Visualizing Climate Variability with Time-Dependent Probability Density Functions, Detecting it with Information Theory”, Procedia Computer Science, vol. 9, pp. 917-926, 2012.
Y. Peng, Knight, C., Blood, P., Crosby, L., and Voth, G. A., “Extending Parallel Scalability of LAMMPS and Multiscale Reactive Molecular Simulations”, 2012.
D. E. Keyes, McInnes, L. Curfman, Woodward, C., Gropp, W. D., Myra, E., and Pernice, M., “Multiphysics Simulations: Challenges and Opportunities”, 2012.
N. Goldberg, Kim, Y., Leyffer, S., and Veselka, T., “Adaptively Refined Dynamic Program for Linear Spline Regression”, 2012.
J. Chen, Wang, L., and Anitescu, M., “A Fast Summation Tree Code for Matern Kernel”, SIAM Journal on Scientific Computing, vol. 36, no. 1, pp. A289-A309, 2012.
M. McCourt, Rognlien, T. D., McInnes, L. Curfman, and Zhang, H., “Improving Parallel Scalability for Edge Plasma Transport Simulations with Neutral Gas Species”, 2012.