#! @PERL@ -w
# -*- Mode: perl; -*-
$abs_mpich2srcdir = "@abs_mpich2srcdir@";
# 
# (C) 2006 by Argonne National Laboratory.
#     See COPYRIGHT in top-level directory.
#
#
# Set some defaults
$includedir = ".";
$skipAction = 0;
$makefilebase = "Makefile.base";
$ranliblib    = 1;   # only set to 0 on systems where ar 
                     # computes a symbol table index.  Also see RANLIBNEEDED
                     # environment variable
$useinclude = 0;     # set to 1 to make the Makefiles refer to a single
                     # base makefile.
$include_list = "";
$vpath_config = 0;   # set to 1 for @VPATH@
$nocomments = 0;     # set to 1 to exclude comments from the source file
$commonmake = "";    # Common entries for each generated Makefile
$maint_targets = 1;  # set to 0 for distribution versions
$maint_perf_targets = 0; # set to 1 to get extra targets to aid in 
                         # performance tuning.  These may cause problems
                         # if the generated files are sometimes used
                         # in preference to the original source files,
                         # so this is not the default
$verbose = 0;        # set to 1 to get more information
$am_a = "";          # set to _a for automake style input
$do_dependencies = "dynamic"; # set to no, static, or dynamic to attempt
                              # to generate dependency information 
			      # use "ignore" to produce a target (for
			      # recursive ops) but no actions
$dependenciesDummy = "no";    # set to yes to create a dummy target for
                              # dependencies
$makeInclude = "include";     # set to the include command to use.
                              # This is more robust if it ignores missing files
                              # (e.g., the gnumake "-include")
$gCheckForTargets = 0;        # Set to 1 to look for files not included
                              # in the Makefile.sm
$gSubdirSMVarsSeen = "";      # Set to contain the names of variables in
                              # Makefile.sm that override variables for 
                              # a subdirectory
@subdirsSMVars = ();          # Stack used with gSubdirSMVarsSeen

$smrootdir = "";              # Location of simplemake - this will override 
                              # the automatic setting if used.

# makeBlockSep is used to deliniate blocks of code in the generated makefile
# to enhance readability
$makeBlockSep = 
"# --------------------------------------------------------------------------\n";

# Set the names for the autoconf and autoheader program, along with 
# the optional args and the argument used to specify the include dir for
# autoconf/autoheader (autoconf 2.57 changed the command-line interface
# without maintaining backward compatibility)
if (defined($ENV{"AUTOCONF"})) { 
    $autoconf_prog = $ENV{"AUTOCONF"};
}
else {
    $autoconf_prog = "autoconf";
}
if (defined($ENV{"AUTOHEADER"})) { 
    $autoheader_prog = $ENV{"AUTOHEADER"};
}
else {
    $autoheader_prog = "autoheader";
}
if (defined($ENV{"CHECKTARGETS"})) {
    $gCheckForTargets = 1;
}
$autoconf_args = ""; # Extra arguments for autoconf
$acincdir_arg = "-l";

$do_sharedlibs  = 1; # set to 1 the generate targets for shared libraries
$found_sharedlib = 0;# set to 1 if a specific shared library target is found

$root_tags = 1;      # set to 1 to create a tags file in the root dir
$local_tags = 0;     # set to 1 to create a tags file in the local dir
#$do_libmember = 0;   # set to 1 to generate library member rules in makefiles
$do_docs = 1;        # set to 1 to generate documentation

$convert_Ldir_to_relative = 1; # set to 1 to convert -Ldir to ../../lib 
                     # relative to the rootdir
#
# The following two symbols are defined for future use in generating
# the dependency information for programs that are created.  This
# allows us to ensure that test programs are rebuilt if we rebuild the 
# libraries
#$project_libs = "";  # name of the libraries that are created by
#                     # this project
#$project_libdir = "";# name of the directory (may contain ROOTDIR) in which
#                     # the libraries are created                    
#
# Perhaps a better approach is to provide
# <program>_DEPS = other program dependencies
# DEPSALL = dependencies for *all* programs

$make_depend = "gcc -MM -MT '_$$*.o $$*.o'";  
           # Set to command to create dependency list.  Include the
           # Profiling objects (_xxx.o).  If gcc includes -MF, we can
           # output directly: -MF '.deps/$*.d'
$fixup_autoconf_cd = 0; # set to 1 to (partially) fixup configure for
                        # pathnames that contain blanks
$autoconf = "autoconf"; # Name of autoconf program to use
$autoconf_version = ""; # Require a specific version
$configure_has_config_headers = "no";
#
$quietmake = "@";       # set to "" for echo commands, @ to suppress them
$quietLine = "@";       # set to "" to make the clean targets echo commands
#
# Defaults for building MPICH
$doc_heading = "MPI";
#%doc_extra   = ();  # for kinds html, man, latex
#
# Set to 1 if make doesn't handle time stamps properly (some makes, including
# some versions of gnumake, improperly and inconsistently 
# handle comparisons of less than a second 
$fixup_for_timestamps = 0;
# Set a default sleepTime.
$sleepTime = 1;
$useSleepFast = 1;
# The sleep amount should be parameterized.  One developer at IBM 
# needed 10 seconds, not 1, because of the variation in file system times
# between the local machine and the file server. The environment
# variable INTERDIR_SLEEP , for inter-directory sleep, sets both the
# time and selects the use of slow sleep

if (defined($ENV{'INTERDIR_SLEEP'})) {
    $sleepTime = $ENV{'INTERDIR_SLEEP'};
    $useSleepFast = 0;
    $fixup_for_timestamps = 1; 
}

$SleepSlow = "sleep $sleepTime";
$SleepFast = "perl -e \'\$\$now=time;\$\$now-=10;utime \$\$now, \$\$now, \"LIB\";\'";

# Set the default (it can be overridden by the command line)
if ($useSleepFast) {
    $Sleep = $SleepFast;
} 
else {
    $Sleep = $SleepSlow;
}

# Check environment variable to see if ranlib is needed.
if (defined($ENV{"RANLIBNEEDED"})) {
    my $val = $ENV{"RANLIBNEEDED"};
    if ($val eq "YES" || $val eq "yes" || $val == 1) {
	$ranliblib = 1;
    }
    elsif ($val eq "NO" || $val eq "no" || $val == 0) {
	$ranliblib = 0;
    }
}

#
# Output File end-of-line character
$newline = "\n";

$create_configure_input = 1;  # Changes file.sm to file.in .  Set to 0
                              # for file.sm to file .
$smdir=$0;         # directory containing simplemake
if ($smdir =~/^[^\/]/) {
    $curpwd = $ENV{'PWD'};
    #chomp($curpwd = `pwd`);
    #print "curdir = $curpwd\n";
    #print "\$0 = $0\n";
    $smdir = $curpwd . "/$0";
}
$smdir =~ s/\/?simplemake$//;
#print "smdir = $smdir\n";

$debug = 0;                 # General debugging
$debug_dirs = 0;            # Debug the choice of directories
$debug_confdir = 0;         # Track the directory containing the controlling
                            # configure.in
$gDebugWhy = 0;             # Provide an explanation of why certain
                            # targets are created
$gDebugSubdirVar = 0;       # Track changes to internal variables that 
                            # apply to a subdirectory
$debugConfigHeaderDepend = 0;    # Print the config header targets added to
                                 # makefile.in's
# Allow us to set the debug variables from the environment:
if (defined($ENV{"DEBUG"})) { $debug = 1; }
if (defined($ENV{"DEBUG_DIRS"})) { $debug_dirs = 1; }
if (defined($ENV{"DEBUG_CONFDIR"})) { $debug_confdir = 1; }
if (defined($ENV{"DEBUG_SUBDIRVAR"})) { $gDebugSubdirVar = 1; }

# Initialize global variables used in informal modules
&printInit();

$quiet = 0;

%libdir = ();
#
# While simplemake doesn't support ext->other (e.g., .c to .s), 
# the rules have been added.
%extrules = ( 'c:o' => '$(C_COMPILE) -c $<', 
	      'f:o' => '$(F77_COMPILE) -c $<',
	      'cxx:o' => '$(CXX_COMPILE) -c $<',
	      'cpp:o' => '$(CXX_COMPILE) -c $<',
	      's:o' => '$(AS_COMPILE) $<',
	      'f90:o' => '$(F90_COMPILE) -c $<',
# Assembler *output* definitions
	      'c:s' => '$(C_COMPILE) -S $<',
	      'f:s' => '$(F77_COMPILE) -S $<',
# C preprocessor *output* definitions.  We don't use cpp as the 
# output suffix to avoid conflicts with C++ 
	      'c:txt' => '$(CPP) $(INCLUDES) $(CPPFLAGS) $< >$*.txt',
	      'F:txt' => '$(CPP) $(INCLUDES) $(CPPFLAGS) $<  >$*.txt',
	      'cxx:txt' => '$(CXXCPP) $(INCLUDES) $(CPPFLAGS) $< >$*.txt',
# Program from source rules
	      'c:' => '$(C_COMPILE) -o $* $< $(LDFLAGS) $(LIBS)',
	      'f:' => '$(F77_COMPILE) -o $* $< $(LDFLAGS) $(LIBS)',
	      'f90:' => '$(F90_COMPILE) -o $* $< $(LDFLAGS) $(LIBS)',
              'cxx:' => '$(CXX_COMPILE) -o $* $< $(LDFLAGS) $(LIBS)',
# LaTeX definitions
	      'tex:dvi' => 'latex $<',
	      'dvi:ps' => 'dvips $<',
	      'dvi:pdf' => 'dvipdfm $<',
# Shared object definitions	      
# To avoid overwritting the .o file, we use a specific output file name
# Note that many compilers insist that that file have a .o extension,
# so we change the *name*.  We us _s for the shared lib intermediates
	      'c:lo' => '$(C_COMPILE_SHL) -c $< -o _s$*.o
	@mv -f _s$*.o $*.lo', 
	      'f:lo' => '$(F77_COMPILE_SHL) -c $< -o _s$*.o
	@mv -f _s$*.o $*.lo',
	      'cxx:lo' => '$(CXX_COMPILE_SHL) -c $< -o _s$*.o
	@mv -f _s$*.o $*.lo',
	      'cpp:lo' => '$(CXX_COMPILE_SHL) -c $< -o _s$*.o
	@mv -f _s$*.o $*.lo',
	      'f90:lo' => '$(F90_COMPILE_SHL) -c $< -o _s$*.o
	@mv -f _s$*.o $*.lo',
## This has an MPICH-specific definition that we should eventually generalize
## We use -o on the compile line to keep from overwriting the .o file;
## this improves the behavior when weak symbols are not supported
## We use _ for the profiling lib intermediates
#              'c:pf' => '${C_COMPILE} -c $< -o _$*.o
	     );

# When we are building profiled versions, we use a separate ext rule
%extrules_with_profile = %extrules;
# PROFILE_DEF_MPI is set when needed to create the profiling libraries.
#$extrules_with_profile{'c:o'} =~ s/-c/-c \@PROFILE_DEF_MPI\@/;
#print "rule = $extrules_with_profile{'c:o'}\n" if $debug;

# Definitions for each extension (these are the defs needed for each ext->o
# extension)
%extdef = ( 'c:o'   => 'CC              = @CC@
CFLAGS          = @CFLAGS@ $(MPICH2_MAKE_CFLAGS)
C_COMPILE       = $(CC) $(DEFS) $(INCLUDES) $(CFLAGS) $(CPPFLAGS)',
	    'f:o'   => 'FC              = @FC@
FFLAGS          = @FFLAGS@
F77_COMPILE     = $(FC) $(FFLAGS) $(F77INCLUDES)',
	    'cxx:o' => 'CXX             = @CXX@
CXXFLAGS        = @CXXFLAGS@
CXX_COMPILE     = $(CXX) $(DEFS) $(INCLUDES) $(CXXFLAGS) $(CPPFLAGS)',
	    'cpp:o' => 'CXX             = @CXX@
CXXFLAGS        = @CXXFLAGS@
CXX_COMPILE     = $(CXX) $(DEFS) $(INCLUDES) $(CXXFLAGS) $(CPPFLAGS)',
	    'cs:o'  => 'CSHARP          = @CSHARP@
CSFLAGS         = @CSFLAGS@
CSHARP_COMPILE  = $(CSHARP) $(DEFS) $(INCLUDES) $(CSFLAGS) $(CPPFLAGS)',
	    's:o'   => 'AS              = @AS@
AS_COMPILE      = $(AS)',
	    'f90:o'   => 'F90              = @F90@
F90FLAGS        = @F90FLAGS@
F90_COMPILE     = $(F90) $(F90FLAGS) $(F90INCLUDES)',
# Similarly, but for shared-library versions
	    'c:lo'   => 'CC_SHL          = @CC_SHL@
C_COMPILE_SHL   = $(CC_SHL) $(DEFS) $(INCLUDES) $(CFLAGS) $(CPPFLAGS)',
	    'f:lo'   => 'FC_SHL          = @FC_SHL@
F77_COMPILE_SHL = $(FC_SHL) $(FFLAGS) $(F77INCLUDES)',
	    'f90:lo'   => 'F90_SHL          = @F90_SHL@
F90_COMPILE_SHL = $(F90_SHL) $(F90FLAGS) $(F90INCLUDES)',
	    'cxx:lo' => 'CXX_SHL         = @CXX_SHL@
CXX_COMPILE_SHL = $(CXX_SHL) $(DEFS) $(INCLUDES) $(CXXFLAGS) $(CPPFLAGS)',
	    'cpp:lo' => 'CXX_SHL         = @CXX_SHL@
CXX_COMPILE_SHL = $(CXX_SHL) $(DEFS) $(INCLUDES) $(CXXFLAGS) $(CPPFLAGS)',
	   );

%extstring = ( 'c:o'    => '  CC              $<',
	       'c:'     => '  CC              $<',
	       'f:o'    => '  FC              $<',
	       'cxx:o'  => '  CXX             $<',
	       'cpp:o'  => '  CXX             $<',
	       'cs:o'   => '  CS              $<',
	       's:o'    => '  AS              $<',
	       'f90:o'  => '  F90             $<',
	       'c:lo'   => '  CC              $<',
	       'f:lo'   => '  FC              $<',
	       'f90:lo' => '  F90             $<',
	       'cxx:lo' => '  CXX             $<',
	       'cpp:lo' => '  CPP             $<',
    );

#
# Rules to build programs (.o:)
# 
# We need to include the <lang>FLAGS, because configure links programs
# that way when it tests programs.
%progrules = ( 'c' => '$(C_LINK) $(CFLAGS) $(LDFLAGS)',
	       'cxx' => '$(CXX_LINK) $(CXXFLAGS) $(LDFLAGS)',
	       'cpp' => '$(CXX_LINK) $(CXXFLAGS) $(LDFLAGS)',
	       'cs'  => '$(CSHARP_LINK) $(LDFLAGS)',
	       'f'   => '$(F77_LINK) $(FFLAGS) $(LDFLAGS)',
	       'f90' => '$(F90_LINK) $(F90FLAGS) $(LDFLAGS)',
	      );
%progdefs = ( 'c' =>   'C_LINK         = $(CC)',
	      'cxx' => 'CXX_LINK       = $(CXX)',
	      'cpp' => 'CXX_LINK       = $(CXX)',
	      'cs'  => 'CSHARP_LINK    = $(CSHARP)',
	      'f'   => 'F77_LINK       = $(FC)',
	      'f90' => 'F90_LINK       = $(F90)',
	     );

# Rules to build shared libraries (these are like programs
# Question: Do we want a common rule or separate rules for each language?
# These are out-of-date.
%shlibdefs = ( 'c' =>   'C_LINK_SHL      = @C_LINK_SHL@',
	       'cxx' => 'CXX_LINK_SHL    = @CXX_LINK_SHL@',
	       'cpp' => 'CXX_LINK_SHL    = @CXX_LINK_SHL@',
	       'f'   => 'F77_LINK_SHL    = @F77_LINK_SHL@',
	       'f90' => 'F90_LINK_SHL    = @F90_LINK_SHL@',
	     );
#%shlibrules = ( 'c' => '$(C_LINK_SHL) $(LDFLAGS)',
#	       'cxx' => '$(CXX_LINK_SHL) $(LDFLAGS)',
#	       'cpp' => '$(CXX_LINK_SHL) $(LDFLAGS)',
#	       'f'   => '$(F77_LINK_SHL) $(LDFLAGS)',
#	       'f90' => '$(F90_LINK_SHL) $(LDFLAGS)',
#	      );

#
# Directories needed.  These are the prefix etc.  Many are needed only
# at the top level, particularly for installation.  srcdir is needed only for
# VPATH builds
$srcdir_name =               "srcdir          = \@srcdir\@";
$abs_srcdir_name =           "abs_srcdir      = \@abs_srcdir\@";
$master_topsrcdir_name =     "master_top_srcdir  = \@master_top_srcdir\@";
$topsrcdir_name =            "top_srcdir      = \@top_srcdir\@";
$prefix_name =               "prefix          = \@prefix\@"; 
$exec_prefix_name =          "exec_prefix     = \@exec_prefix\@";
$bindir_name =               "bindir          = \@bindir\@";
$sbindir_name =              "sbindir         = \@sbindir\@";
$libdir_name =               "libdir          = \@libdir\@";
$includedir_name =           "includedir      = \@includedir\@";
$mandir_name =               "mandir          = \@mandir\@";
$htmldir_name =              "htmldir         = \@htmldir\@";
$docdir_name =               "docdir          = \@docdir\@";
# datarootdir is new in autoconf 2.60, and is needed for other
# dirs like mandir (much as prefix and execprefix are also needed)
$datarootdir_name =          "datarootdir     = \@datarootdir\@";
$datadir_name =              "datadir         = \@datadir\@";
$sysconfdir_name =           "sysconfdir      = \@sysconfdir\@";
$pkgconfigdir_name =         "pkgconfigdir    = \@libdir\@/pkgconfig";
$builddir_name =             "builddir        = \@builddir\@";
$abs_builddir_name =         "abs_builddir    = \@abs_builddir\@";
# top_builddir is used by libtool.  We use master_top_builddir because
# the various configure scripts need to use the root of the build (that
# is the model that we use for simplemake projects)
$top_builddir_name =         "top_builddir    = \@master_top_builddir\@";

%dirdefs = ( 'srcdir'     => $srcdir_name,
             'abs_srcdir' => $abs_srcdir_name,
	     'top_srcdir' => $topsrcdir_name,
	     'prefix'     => $prefix_name,
	     'exec_prefix'=> $exec_prefix_name,
	     'bindir'     => $bindir_name,
	     'sbindir'    => $sbindir_name,
	     'libdir'     => $libdir_name,
	     'includedir' => $includedir_name,
	     'master_top_srcdir' => $master_topsrcdir_name,
	     'top_builddir' => $top_builddir_name,
	     'builddir'     => $builddir_name,
	     'abs_builddir' => $abs_builddir_name,
	     'mandir'       => $mandir_name,
	     'datarootdir'  => $datarootdir_name,
	     'htmldir'      => $htmldir_name,
	     'docdir'       => $docdir_name,
	     'sysconfdir'   => $sysconfdir_name,
	     'pkgconfigdir' => $pkgconfigdir_name,
	     'datadir'      => $datadir_name,
	    );

#InstallDirFromKind maps XXX from install_XXX into the GNU name
%InstallDirFromKind = ( 'LIB' => 'libdir', 
		 'SHLIB' => 'libdir',    # SHLIB also signals library to build
		 'DLLLIB' => 'libdir',   # DLLLIB also signals library to build
		 'BIN' => 'bindir',
		 'SCRIPT' => 'bindir', 
		 'INCLUDE' => 'includedir', 
		 'MAN' => 'mandir',
		 'HTML' => 'htmldir',
		 'DOC' => 'docdir',
		 'ETC' => 'sysconfdir',
		 'DATADIR' => 'datadir',
		 'PKGCONFIG' => 'pkgconfigdir',
		);
# We add the -p switch to install for the libraries because libraries
# that require ranlib may fail if installed without preserving the
# data/time on the file.  This should work because configure looks for
# a BSD-style install.
# Sigh.  ginstall (!!!) doesn't support the -p switch.
# This means that there is no way to install a library under Darwin
# without defining INSTALL_DATA as install -p, which configure 
# does not figure out(!).  The MPICH2 configure does check for 
# whether install works with or without -p.
#
# CREATESHLIB is a special script for shared libraries
%install_methods = ( 'LIB'     => '$(INSTALL_DATA)',
		     'BIN'     => '$(INSTALL_PROGRAM) $(INSTALL_STRIP_FLAG)',
		     'SCRIPT'  => '$(INSTALL_SCRIPT)',
		     'SHLIB'   => '$(CREATESHLIB) -version-info $(ABIVERSION) --mode=install',
		     'DLLLIB'  => '$(CREATESHLIB) -version-info $(ABIVERSION) --mode=install',
		     'INCLUDE' => '$(INSTALL_DATA)',
		     'MAN'     => '$(INSTALL_DATA)',
		     'HTML'    => '$(INSTALL_DATA)',
		     'DOC'     => '$(INSTALL_DATA)',
		     'ETC'     => '$(INSTALL_DATA)',
		     'DATADIR' => '$(INSTALL_DATA)',
		     'PKGCONFIG' => '$(INSTALL_DATA)',
		    );
%uninstall_methods = ( 'SHLIB'   => '$(CREATESHLIB) --mode=uninstall',
                       'DLLLIB'  => '$(CREATESHLIB) --mode=uninstall',
                     );
# These give the directories that autoconf will require for the 
%required_dirs = ( 'libdir'      => 'exec_prefix prefix',
		   'bindir'      => 'exec_prefix prefix',
		   'mandir'      => 'prefix datarootdir',
		   'htmldir'     => 'prefix datarootdir',
		   'docdir'      => 'prefix datarootdir',
		   'includedir'  => 'prefix',
 		   'exec_prefix' => 'prefix',
		   'sysconfdir'  => 'prefix',
		   'exec_prefix' => 'prefix',
		   'pkgconfigdir'=> 'libdir exec_prefix prefix',
		   'datadir'     => 'prefix',
		  );
# etc.
#
# Remember which document types we've seen
%globaldockind = ( "html" => 0, "man" => 0, "latex" => 0 );
# Set globaldocdir to the location to use if no specific directory is
# chosen.  It may contain ROOTDIR.
$globaldocdir  = 'ROOTDIR/$dockinddirval';
# Directories for documentation 
# These may be overridden how by setting docthiskinddir
%dockinddir = ( "html" => "www/www3", 
	        "man" => "man/man3", 
	        "latex" => "doc/refman" );
%docthiskinddir = ();
# man targets for documentation
%docTargetName = ( "html" => "htmldoc",
		   "man" => "mandoc",
		  "latex" => "latexdoc" );
# doctext name to produce documentation
%doctextOptionName = ( "html" => "-html",
		       "man" => "-man",       # New version allows -man
		      "latex" => "-latex" );
$doc_namedefs   = "";
$doc_attop = 1;
#
# Rules
# (need a way to quote the rule here and unquote it when used)
#
# Need a way to substitute for additional or replacement default rules
# Other global data
$do_profilelibs   = 1; # Set to one if a profiling version of the library 
                       # should be created (required for MPI)
$found_profilelib = 0;

# Default values
$distcleanfiles = "";

@subdirs = ();
@doc_subdirs = ();

%notSimplemakeDirs = (); # This hash is used to note directories that
                         # are part of the subdirs but are not 
                         # simplemake dirs

# ---------------------------------------------------------------------------
# Global variables that describe extensions
#   Each extension has a name, related to the command-field in the
#   Makefile.sm, and must be added to this array
@KnownActions = ();
# Load any extension definitions, in this order
&SMReadDefnFiles( "maint/smlib" );
# If we're not in the root of the source directory, then 
# also read that directory.  We can use stat to check the inode numbers of the
# directories; if they are the same, the directories are the same.
# (Only read if there is a local maint/smlib directory)
@d1 = stat( "maint/smlib" );
@d2 = stat( "$abs_mpich2srcdir/maint/smlib" );
if ( (! -d "maint/smlib") || $d1[1] != $d2[1]) {
    &SMReadDefnFiles( "$abs_mpich2srcdir/maint/smlib" );
}
if (defined($ENV{"SMDIR"})) {
    &SMReadDefnFiles( $ENV{"SMDIR"} );
}
&SMReadDefnFiles( "." );
# ---------------------------------------------------------------------------
@keepargs = ();    # Used to recreate simplemake invocation for make target
$foundFile = "no";
foreach $_ (@ARGV) {
    $keepargs[$#keepargs+1] = $_;    # Add all args by default
    if (/-nocomments/) { $nocomments = 1; }
    elsif (/-v/) { $verbose = 1; }
    elsif (/-am/) { $am_a = "_a"; }
    elsif (/-libdir=([^=]*)=(.*)$/) {
	print "libdir{$1} = $2$newline" if (!$quiet);
	$libdir{$1}  = "$2/";
	# Replace with an easier-to-preserve version
	# FIXME: Replace a single $ with double $$ in $1?
	my $lname = $1;
	my $rname = $2;
	# Replace a single $ with a double $ in lname *only*
	$lname =~ s/\$/\$\$/;
	$keepargs[$#keepargs] = "-libdir=\'$lname=$rname\'";
    }
    elsif (/-common=(.*)$/) {
	$filename = $1;
	open( CD,"<$filename" ) || die "Could not open $filename\n";
	while (<CD>) {
	    s/\r//g; # Strip \r for DOS
	    $commonmake .= $_;
	}
	close(CD);
	# Replace this argument with an updated version
	if ($filename =~ /^[^\/]/) {
  	    $keepargs[$#keepargs] = "-common=\${master_top_srcdir}/$filename";
	}
    }
    elsif (/-autoconf=(.*)$/) {
	$autoconf_args = $1;
    }
    elsif (/-include=(.*)$/) {
	$include_list = $1;
    }
    elsif (/-distrib/) {
	# Turn off the maintenance targets in the distribution version
	$maint_targets = 0;
	$maint_perf_targets = 0;
	$do_docs = 0;
	# Use the robust sleep, not the fast perl version
	$useSleepFast = 0;
	$Sleep = $SleepSlow;
	# FIXME: Sleep code only used if fixup set to 1
	#$fixup_for_timestamps = 1; # make is broken
    }
    elsif (/-interdirsleep/) {
	$useSleepFast = 0;
	$fixup_for_timestamps = 1;
	if (/-interdirsleep=(\d*)/) {
	    $sleepTime = $1;
	    $SleepSlow = "sleep $sleepTime";
	}
	$Sleep = $SleepSlow;
    }
    elsif (/-perftargets/) {
	# This option enables any performance targets of interest to 
	# maintainers (currently adds options to build asm (.s) files)
	$maint_perf_targets = 1;
    }
    elsif (/-dos/) {
	$newline = "\r\n";
    }
    elsif (/-shared/) {
	$do_sharedlibs = 1;
    }
    elsif (/-noshared/) {
	$do_sharedlibs = 0;
    }
    elsif (/-docs/) {
	$do_docs = 1;
    }
    elsif (/-nodocs/) {
	$do_docs = 0;
    }
    elsif (/-vpath=?(.*)/) {
	$val = $1;
	if ($val eq "no") { $vpath_config = 0; } 
	else { $vpath_config = 1; }
    }
    elsif (/-depend=static/) {
	$do_dependencies = "static";
    }
    elsif (/-depend/) {
	$do_dependencies = "dynamic";
    }
    elsif (/-nodepend/) {
	$do_dependencies = "no";
    }
    elsif (/-rootdir=(.*)$/) {
        $rootdirpath = $1;
	$#keepargs--;  # remove this entry (it is explicitly recreated)
    }
    elsif (/-distcleanfiles=(.*)/) {
	# extra files to remove in this directory
	if ($distcleanfiles ne "") { $distcleanfiles .= " "; }
	$distcleanfiles .= $1;
    }
    elsif (/-checktargets/) {
	$gCheckForTargets = 1;
    }
    elsif (/-configdir=(.*)/) {
	# Use this option to specify the location of the configure
	# that controls the Makefile.in in this directory.
	# This is normally used when rebuilding a single Makefile.in
	# from a Makefile.sm .
	$last_config_dir = $1;
	$#keepargs--;  # remove this entry (it is explicitly recreated)
    }
    elsif (/-debugdirs/) {
	$debug_dirs = 1;
    }
    elsif (/-debug/) {
	$debug = 1;
    }
    elsif (/-smvar_([\w_]*)=(.*)/) {
	# Allow the command-line to override internal variables
	my $varname = $1;
	my $varvalue   = $2;
	$${varname} = $varvalue;
    }
    elsif (/-quietmake/) { $quietmake = "@"; }
    elsif (/-noquietmake/) { $quietmake = ""; }
    elsif (/-quiet/) { $quiet = 1; }
    elsif (/-docheading=(.$)/) { $doc_heading = $1; }
    elsif (/-docdestdir=(.*)/) { $globaldocdir = $1; }	   
    elsif (/-docnamedefs=(.*)/) { $doc_namedefs = $1; }	   
    elsif (/-smroot=(.*)/) { $smrootdir = $1; $smdir = $1; }
    elsif (/-help/) {
	&printHelp;
	exit 0;
    }
    else {
	$#keepargs--;  # Remove filename from list
	$foundFile = "yes";
	&ProcessFile ( $_ );
    }
}


# If there is no argument and the default filename, then process it
print "found file = $foundFile\n" if $debug;
if ($foundFile ne "yes" && -s "Makefile.sm") {
    print "about to process file\n";
    &ProcessFile( "Makefile.sm" );
}


# Check that gcc is available if we need it
if ($do_dependencies eq "static") {
    if ($make_depend =~ /gcc\s.*-MM/) { 
	# (we use the pattern match to allow other options)
	# This was | 2>&1 but the redirect should go before the pipe.
	if (open (TFD, "gcc --version 2>&1 |" )) {
	    close TFD;
	}
	else {
	    $do_dependencies = "no";
	}
    }
    # insert check here.  Perhaps we should try #include <stdio.h>?
}

# Routines
# =========================================================================
# Read Makefile.sm
sub ReadMfile {
    my $Mfile = $_[0];
    my $linecount = 0;
    open (MFILE,"<$Mfile" ) || die "Could not open $Mfile in $curdir\n";
    &ClearVars;
    while (<MFILE>) {
	$linecount++;
	s/\r//g;              # Remove \r for DOS
	$origline = $_;
	# Remove trailing newline (we had trouble with chomp on DOS)
        #chomp;
        s/[\r\n]*$//;

        # Handle continuation lines
        while (s/\\$//) {  # Match and remove a trailing \
	    if (eof(MFILE)) {
		print STDERR "Unexpected EOF in $curdir$Mfile\n";
		last;
	    }
	    $nextline = <MFILE>;
	    $nextline =~ s/\r//g; # Remove \r for DOS
	    $linecount++;
	    $origline .= $nextline;
	    #chomp $nextline;
	    $nextline =~ s/[\r\n]*$//; 
            $_ .= $nextline;
        }

	# Check for portability problems
	# Check for a blank line that starts with a tab
	if (/^\t\s*$/) {
	    print STDERR "File $curdir$Mfile contains a blank line beginning with a tab\nat line $linecount.  Some make programs will fail with a syntax error.\n";
	}
	if (/^\t#/) {
	    print STDERR "File $curdir$Mfile contains a comment line beginning with a tab\nat line $linecount.  Some make programs will fail if this comment is part\nof a command script in a target\n";
	}

	# Look for commands that are defined by extensions.  These are
	# of the form
	#    name_COMMAND
	# where COMMAND is all uppercase.  "name" may itself be of the form
        #    name_subcommand
        # an example is
        #   libfoo_la_SOURCES
        # where the command is SOURCES and the subcommand is la
	# We allow the names to include make variables and autoconf 
	# variables
	if (/^([@\${}\(\)\w-]+)_([A-Z]+)\s*=(.*)/) {
	    my $name    = $1;
	    my $command = $2;
	    my $value   = $3;
	    # See if this is a known extension command
	    my $fcnName = "Action" . $command;
	    if (defined(&$fcnName)) {
		# This is an extension.  Invoke its function
		print "Executing $fcnName for $_\n" if $debug;
		$skipAction = 0;
		&$fcnName( $_ );
		$origline = "";
		# skip the processing of this line for the default commands
		if (!defined($skipAction) || $skipAction == 1) {
		    next;
		}
	    }
	}

        # Look for reserved forms:
        #lib([\w-]*)_SOURCES = names
        #lib([\w-]*)_DIR = name
	#install_local_DIR = name(s)
        #SUBDIRS = names
        #DOC_SUBDIRS = names
	#DOCDESTDIRS = kind:dir [, kind:dir ]*
	# Also keep track of Makefile usages:
	#target: ...
	#variable = value
	#.SUFFIXES:value
	# Using the _a_ in the library lines is necessary to distinguish
	# between libraries and programs that start with lib...
        if (/^lib([@\${}\(\)\w-]+)_a_SOURCES\s*=\s*(.*)$/) {
            $libname   = $1;
            $libsource = $2;
            $libraries{ $libname } = $libsource;
	    # Keep a number for each library; this is used for
	    # alternate targets used to handle filesystem timestamp problems
	    $libnum{$libname} = $libcount++;
	    # Add to targets
	    $libloc = &GetLibLoc( $libname );
	    $alltargets[$#alltargets+1] = "${libloc}lib$libname.a";
	    &LibraryTimestampTarget( "${libloc}lib$libname.a", 
				     ".libstamp" . $libnum{$libname} );
	    # Shared libraries should not be built unconditionally.  
	    # Instead of adding them to the alltargets, add them
	    # to a allshlibtargets
	    # FIXME: Sometimes, we want to use a separate library
	    # for the shared library (e.g., for the C++ bindings)
	    # while using a single library for the static linking.
	    # here is where we would do that, using a special
	    # mapping of library name to shared library name
	    if ($do_sharedlibs && !defined($libNotShared{$libname})) {
	    	$allshlibtargets[$#allshlibtargets+1] = 
		    "${libloc}lib$libname.la";
		$dirs_seen{'top_builddir'} = 1;   # For libtool
		$libnum{$libname.".la"} = $libcount++;
	    }
	    # Keep track of source types
	    &FindSrcTypes( $libsource );
	    # Keep track of source files
	    &SaveSrcNames( $libsource );
        }
	# In some cases, there is a library that should only be built as
	# a non-shared library (e.g., built with Fortran)
        elsif (/^lib([@\${}\(\)\w-]*)_a_NOSHARED\s*$/) {
	    print "Adding $1 as not-shared\n" if $debug;
	    $libNotShared{$1} = 1;
	}
	# Using the _so_ in the library lines is necessary to distinguish
	# between libraries and programs that start with lib...
        # This target is used for libraries that are *always* needed
	# as shared libraries (e.g., they are used only in a dynamic
	# link context).  No _so_DIR for these yet because stand-alone
	# shared libraries are usually contained within a single
	# directory.
        elsif (/^lib([@\${}\(\)\w-]*)_so_SOURCES\s*=\s*(.*)$/) {
	    $found_sharedlib = 1;
            $libname = "$1";
            $libsource = $2;
            $shared_libraries{ $libname } = $libsource;
	    # Add to targets
	    $libloc = &GetLibLoc( $libname );
	    $allshlibtargets[$#allshlibtargets+1] = "${libloc}lib$libname.\@SHLIB_EXT\@";
	    $dirs_seen{'top_builddir'} = 1;   # For libtool
	    # Keep track of source types
	    &FindSrcTypes( $libsource );
	    # Keep track of source files
	    &SaveSrcNames( $libsource );
	    # We need to include .lo as a necessary suffix.
        }
	elsif (/^ALTCOMPILE_([\$\(\)\{\}\w_]+)_SOURCES\s*=\s*(.*)$/) {
	    # Provide a hook to specify the name of an alternate
	    # compiler to use for some special files.
	    # For example, if you want to use pgcc or xlc for most of
	    # the MPICH build, but need to use gcc for some asm (inline
	    # assembler) support.
	    # FIXME: NOT YET IMPLEMENTED
	    my $altCompiler = $1;
	    my $altSources = $2;
	    # We use two hashes: one by compiler, list all sources to
	    # be compiled with that compiler, and one by individual 
	    # source files.
	    $altCompile{$altCompiler} .= "$altSources ";
	    foreach my $source (split(/\s+/, $altSources)) {
		$altCompileSources{$source} = $altCompiler;
	    }
	}
        elsif (/^lib([@\${}\(\)\w-]*)_so_EXPORTS\s*=\s*(.*)$/) {
            $libname = "$1";
            $libexports = $2;
            $shared_libraries_exports{ $libname } = $libexports;
        }
        elsif (/^lib([@\${}\(\)\w-]*)_so_LIBS\s*=\s*(.*)$/) {
	    # Specify dependent libraries for a shared library
	    # (Some systems require knowledge of all of the libraries
	    # needed when creating a shared library.)
            $libname = "$1";
            $dependentlibs = $2;
            $shared_libraries_libs{ $libname } = $dependentlibs;
        }
        elsif (/^lib([@\${}\(\)\w-]*)_a_DIR\s*=\s*(\S+)\s*$/) {
	    # This is an extension over automake.  It makes it easy
	    # to modify a library in a different directory
	    # Add a trailing / because this way we can unconditionally
	    # specify the library directory
	    print "Setting libdir{$1} to $2/\n" if $debug;
            $libdir{$1}  = "$2/";
        }
	elsif (/^install_local_DIR\s*=\s*(.*)\s*$/) {
	    $install_local_dirs = $1;
	}
	elsif (/^doc_([\w-]*)_SOURCES\s*=\s*(.*)\s*$/) {
	    # Lowercase the type
	    $docsrc{lc($1)} = $2;
	    $globaldockind{lc($1)} = 1;
	    # Add any autoconf dir in $doc_namedefs
	    &LookForAutoconfDirs( $doc_namedefs );
	}
	elsif (/^doc_([\w-]*)_DIR\s*=\s*(.*)\s*$/) {
	    # Lowercase the type
	    $docdir{lc($1)} = $2;
	}
	elsif (/^profilelib_([@\${}\(\)\w-]*)_SOURCES\s*=\s*(.*)\s*$/) {
	    # proflib_<oldname>_SOURCES = files
	    $profile_library_sources{$1} = $2;
	    $found_profilelib = 1;
	}
	elsif (/^profilelib_([@\${}\(\)\w-]*)\s*=\s*(.*)\s*$/) {
	    # proflib_<oldname> = <newname>
	    $profile_libraries{$1} = $2;
	    $profile_libraries_basename{$2} = $1;
	    $libnum{$2} = $libcount++;
	    if ($do_sharedlibs) {
		$libnum{$2.".la"} = $libcount++;
	    }
	    $found_profilelib = 1;
	}
	elsif (/^EXT_(\w+)_([\{\}\$\w]+)_SOURCES\s*=\s*(.*)/) {
	    # This is the extension hook for EXT_foo_name_SOURCES = data
	    # We can't just use foo_name_SOURCES because we allow
	    # programs to be defined that way (foo_name with SOURCES)
	    my $optype = $1;
	    my $opname = $2;
	    my $opsources = $3;
	    &CallModule( $optype, $opname, $opsources );
	}
	elsif (/^install_([\w-]*)\s*=\s*(.*)\s*$/) {
	    $install_files{$1} .= "$2 ";
	}
	elsif (/^installdir_([\w-]*)\s*=\s*(.*)\s*$/) {
	    $install_dirs{$1} .= "$2 ";
	}
	elsif (/^optinstall_([\w-]*)\s*=\s*(.*)\s*$/) {
	    # This is for files that will be installed only if present
	    $optinstall_files{$1} .= "$2 ";
	    if ($1 eq "DLLLIB") {
		my $libname = $2;
		$libname =~ s/\.\@SHLIB_EXT\@//;
		$libname =~ s/^\s*lib//;
	    	$alldlllibtargets[$#alldlllibtargets+1] = 
		    "${libloc}lib$libname.la";
	    }

	}
	elsif (/^optinstalldirs_([\w-]*)\s*=\s*(.*)\s*$/) {
	    # This is for files that will be installed only if present
	    $optinstall_dirs{$1} .= "$2 ";
	}
        elsif (/^SUBDIRS\s*=\s*(.*)\s*\r?$/) {
	    # The \r is used to remove any \r in DOS-style files
            @subdirs = split(/\s+/,$1);
	    $subdirs_has_autoconf = 0;
	    $smmakevars{'SUBDIRS'} = $1;
        }
	elsif (/^SUBDIRS_(\w+)\s*=\s*(.*)\s*/) {
	    # use SUBDIRS_acname = realname to say that the
	    # autoconf variable acname, used in SUBDIRS, can
	    # have any of the values realname
	    $subdir_autoconf_vars{$1} = $2;
	    $subdir_optionals .= " $2";
	    # Also add as a make variable because other
	    # parts of the code will look for it as a raw variable.
	    $makevars{"SUBDIRS_$1"} = $2;
	}
        elsif (/^DOC_SUBDIRS\s*=\s*(.*)\s*\r?$/) {
	    # The \r is used to remove any \r in DOS-style files
            @doc_subdirs = split(/\s+/,$1);
	    $smmakevars{'DOC_SUBDIRS'} = $1;
        }
	elsif (/^DOCDESTDIRS\s*=\s*(.*)\s*\r?$/) {
	# kind:dir [, kind:dir ]*
	    $smmakevars{'DOCDESTDIRS'} = $1;
	    for $pair (split(/,\s*/,$1)) {
		$pair =~ /(.*):(.*)/;
		$docthiskinddir{$1} = $2;
	    }
        }
	elsif (/^INSTALL_SUBDIRS\s*=\s*(.*)\s*\r?$/) {
	    @install_subdirs = split(/\s+/,$1);
	    $smmakevars{'INSTALL_SUBDIRS'} = $1;
	}
	elsif (/^NOTSIMPLEMAKE_SUBDIRS\s*=\s*(.*)\s*\r?$/) {
	    foreach my $dir (split(/\s+/,$1)) {
		$notSimplemakeDirs{$dir} = 1;
	    }
	}
        elsif (/^EXTRA_PROGRAMS\s*=\s*(.*)\s*$/) {
	    foreach $program (split(/\s+/,$1)) {
		$extra_programs{$program} = 1;
	    }
	    $smmakevars{'EXTRA_PROGRAMS'} = $1;
	}
        elsif (/^EXTRA_LIBS\s*=\s*(.*)\s*$/) {
	    foreach $lib (split(/\s+/,$1)) {
		$extra_libs{$lib} = 1;
	    }
	    $smmakevars{'EXTRA_LIBS'} = $1;
	}
	elsif (/^TAGS_DIRS\s*=\s*(.*)\s*$/) {
	    # Keep track of tags dirs
	    @tags_dirs = split( /\s+/,$1);
	    $smmakevars{'TAGS_DIRS'} = $1;
	}
	elsif (/^EXTRA_DIRS\s*=\s*(.*)\s*$/) {
	    @extra_dirs = split( /\s+/,$1);
	    $smmakevars{'EXTRA_DIRS'} = $1;
	}
	elsif (/^OTHER_DIRS\s*=\s*(.*)\s*$/) {
	    @other_dirs = split( /\s+/,$1);
	    $smmakevars{'OTHER_DIRS'} = $1;
	}
	elsif (/^EXTERNAL_LIBS\s*=\s*(.*)\s*$/) {
	    foreach $lib (split(/\s+/,$1)) {
		$external_libraries{$lib} = 1;
	    }
	    $smmakevars{'EXTERNAL_LIBS'} = $1;
	}
	elsif (/^(\w+)\s*\+=\s*(.*)\s*$/){
	    # Use this form to prepend values to some of the 
	    # autoconf generated names, e.g., to change
	    # LIBS = \@LIBS\@ 
	    # to
	    # LIBS = \@EXAMPLE_LIBS\@ \@LIBS\@
	    # use
	    # LIBS += \@EXAMPLE_LIBS\@
	    $varname = $1;
	    $varvalue = $2;
	    $PrependVar{$1} = $2;
	}
	elsif (/^(\w*)_ADD\s*=\s*(.*)\s*$/) {
	    # This lets us define "nameAdd = value" by
	    # adding "name_ADD = value" to the makefile.sm
	    # We Could use the smvar form or the prepend form, but
	    # this gives us a slightly cleaner and more controled
	    # way (used for now only with docargs_ADD)
	    $varname = $1 . "Add";
	    $varvalue = $2;
	    $${varname} = $varvalue;
	}
	elsif ($nocomments && /^\s*#/) {
	       ;
	   }
	elsif (/^smvar_(\w+)\s*=\s*(.*)/) {
	    # Allow the user to override any simplemake variable 
	    # E.g.,
	    # smvar_autoconf = /foo/bar/fixedac
	    # causes simplemake to replace "autoconf" with "/foo/bar/fixedac"
	    $varname = $1;
	    $value   = $2;
	    # Save old values
	    $simplemake_vars{$varname} = $$varname;
	    $$varname = $value;
	    print STDERR "setting $varname to $value\n" if $debug;
	}
	elsif (/^smvarSubdir_(\w+)\s*=\s*(.*)/) {
	    my $varname = $1;
	    my $varvalue = $2;
	    if ($varname =~ /;/ || $varvalue =~ /;/) {
		print STDERR "smvarSubdir_$varname=$varvalue must not contain a semicolon\n";
		print STDERR "This command will be ignored\n";
	    }
	    else {
		# Save the name with the CURRENT value, then update the
		# value
		my $oldvalue = "";
		if (defined($$varname)) {
		    $oldvalue = $$varname;
		}
		if ($oldvalue =~ /;/) {
		    print STDERR "Cannot use smvarSubdir_$varname to replace a value that includes a semicolon (current value is $oldvalue)\n";
		}
		else {
		    $gSubdirSMVarsSeen .= "$varname=$oldvalue;";
		    $$varname = $varvalue;
		}
	    }
	}	    
	elsif (/^noinst/) {
	    # Automake target to identify some programs/libraries as
	    # not to be installed.
	    # Skip for now
	    ;
	}
	elsif (/^([\w-]*)_SOURCES\s*=\s*(.*)\s*$/) {
	    # programs
	    $pgm = $1;
	    $pgmsrc = $2;
	    $programs{$pgm} = $pgmsrc;
	    # Add to targets
	    $alltargets[$#alltargets+1] = $pgm;
	    # Keep track of source types
	    &FindSrcTypes( $pgmsrc );
	    # Keep track of source files
	    &SaveSrcNames( $pgmsrc );
	    # Find program source type
	    $pgmsrctype{$pgm} = &FindPgmSrcType( $pgm, $pgmsrc );
	}
	elsif (/^([\w-]*)_LDADD\s*=\s*(.*)\s*$/) {
	    $pgm_ldadd{$1} = $2;
	}
	elsif (/^LDADD\s*=\s*(.*)\s*$/) {
	    $ldadd_all = $1;
	}
	elsif (/^([\w-]*)_DEPADD\s*=\s*(.*)\s*$/) {
	    $pgm_depadd{$1} = $2;
	}
	elsif (/^DEPADD\s*=\s*(.*)\s*$/) {
	    $depadd_all = $1;
	}
	elsif (/^([\w-]+)\s*=\s*(.*)\s*$/) {
	    $other_vars .= "$origline";
	    # Save all variable names
	    $makevars{$1} = $2;
	    # Look for special autoconf directory names
	    &LookForAutoconfDirs( $_ );
	}
	elsif (/^([^:\s]*)\s*:(.*)$/) {
	    # Remember user-defined targets.
	    $usertargets{$1} = $_;
	    $other_text .= "$origline";
	    # We could copy lines until we saw a blank line
	    if ($1 eq ".SUFFIXES") { $ExplicitSuffixes .= $2; }
	    # Look for special autoconf directory names
	    &LookForAutoconfDirs( $_ );
	    &LookForSuffixes( $_ );
	    &LookForVariables( $_ );
	}
	else {
	    $other_text .= "$origline";
	    # Look for special autoconf directory names
	    if (!/^\s*#/) {
	        &LookForAutoconfDirs( $_ );
	    }
	    &LookForVariables( $_ );
	}
    $origline = "";
    }

    # For the simplemake maint target, see if smdir references 
    # any of the autoconf directories (so that we'll include the 
    # appropriate lines in the Makefile.in header)
    if ($maint_targets && $smdir && $smdir ne "") {
	&LookForAutoconfDirs( $smdir );
    }

}

sub WriteMfile {
    $maxline = 80;
    $output_filename = $_[0];
    # Write out the generated Makefile
    unlink $output_filename . ".new";
    open( FD, ">$output_filename.new" ) || die "Could not open $output_filename\n.new";

    print FD "# This $output_filename created by simplemake.  Do not edit$newline$newline";
    if ($output_filename =~ /Makefile\.in/) {
	print FD "# \@configure_input\@$newline";
    }
    # Ensure that the default target takes us to "all"
    print FD "$newline$makeBlockSep";
    print FD "all: all-redirect$newline$newline";
    # Autoconf sets a number of directories that some tools (such as libtool)
    # may rely on.  
    if ($useinclude) {
	printMakeVariable( FD, "SHELL", "\@SHELL\@" );
        print FD "include $includedir/$makefilebase$newline";
	# Print out variables before generated targets
	print FD $other_vars;
	print FD "$newline";
    }
    else {
	# We may want to break DefaultRules into a pre and post version
	&DefaultVariables;

	# Other variables
	
	# Print out variables before generated targets
	print FD $other_vars;
	print FD "$newline";

	# If there were any uses of the smmakevars, add them to the
	# output here
	my $sawvar = 0;
	foreach my $var (keys(%vars_seen)) {
	    if (defined($smmakevars{$var})) {
		print FD "$var = ";
		my $contline = "";
		foreach my $varline (split(/\n/,$smmakevars{$var})) {
		    print FD "$contline$varline";
		    $contline = "\\$newline\t";
		}
		print FD $newline;
		$sawvar = 1;
	    }
	}
	if ($sawvar) { print FD $newline; }

        &DefaultRules;
    }

    &SMInvokeAction( "OutputHeader" );

    # Generate the all-redirect: target (libraries, programs, and 
    # anything specified by all-local)
    &TargetAll;

    # Output the generated targets.  First, the libraries and the shared 
    # libraries
    &TargetLibraries;
    if ($do_sharedlibs) {
	&TargetSharedLibraries( \%libraries );
	if (defined($optinstall_files{'SHLIB'})) {
	    &CreateOptInstallSHLibs( 'SHLIB' );
	}
	if (defined($optinstall_files{'DLLLIB'})) {
	    print STDOUT "DLLLIB target in $curdir\n" if $debug;
	    &CreateOptInstallSHLibs( 'DLLLIB' );
	}
    }

    # Handle any specifically requested shared libraries (ones that
    # have no static counterpart)
    if (%shared_libraries) {
	# If any shared libraries were requested...
	&TargetSharedLibraries( \%shared_libraries );
	foreach $libname (keys(%shared_libraries)) {
	    &TargetSharedLibraryFinal( "lib$libname.la", "lib$libname.\@SHLIB_EXT\@", "." );
	}
    }

    if ($do_profilelibs && $found_profilelib) {
	&print_make_endline( FD );
	print FD $makeBlockSep;
	&TargetProfileLibraries;
	print FD $makeBlockSep;
    }

    # Coverage analysis
    &TargetGcov;

    # Next, the programs
    &TargetPrograms;

    # Documentation
    &TargetDocs;

    print FD $makeBlockSep;
    &TargetInstall;
    print FD $makeBlockSep;

    # This is ugly, but we need to tell the install target when we're at
    # the top for the documentation.  This should be promoted to 
    # a more general sense of "at the top" for all areas.
    $doc_attop = 0;

    if ($do_dependencies ne "no") {
	if ($do_dependencies eq "static") {
	    &TargetDependenciesStatic;
	}
	elsif ($do_dependencies eq "ignore") {
	    # Add a null target so that recursive targets work
	    print FD "dependencies:$newline";
	}
	else {
	    &TargetDependenciesDynamic;
	}
    }
    elsif ($dependenciesDummy eq "yes") {
	print FD "# Dummy target$newline";
	print FD "dependencies:$newline$newline";
    }


    # Tags
    print FD $makeBlockSep;
    &TargetTags;
    print FD $makeBlockSep;

    # Unrecognized lines go here
    print FD $other_text;

    # Add a final target, used by gnumake
    print FD "${newline}FORCE_TARGET:${newline}${newline}";

    close FD;

    &ReplaceIfDifferent( $output_filename, $output_filename . ".new" );

    # FIXME: Make the file read only
    # ($dev,$ino,$mode) = stat $output_filename
    # Modifiy $mode to remove write permissions
    # use chmod $mode $output_filename
    # to change permissions

    # If the user overrode any variables, restore them here
    foreach $varname (keys(%simplemake_vars)) {
	print STDERR "Restoring $varname to $simplemake_vars{$varname}\n" if $debug;
	$$varname = $simplemake_vars{$varname}
    }
}

#
# ===========================================================================
# Output files may contain either a set of default rules, written by this
# routine, or an include of a set of base rules.
#
sub DefaultVariables {
    # SHELL must be in uppercase for Make to use it as the shell to
    # execute commands with.
    printMakeVariable( FD, "SHELL", "\@SHELL\@" );

    # Library definitions
    if (scalar(%libraries)) {
	# Add ar, ranlib definitions if there are any library targets.
	printMakeVariable( FD, "AR", "\@AR\@" );
	printMakeVariable( FD, "RANLIB", "\@RANLIB\@" );
    }
    if ($do_sharedlibs) {
	if (defined($optinstall_files{'SHLIB'}) ||
	    defined($optinstall_files{'DLLLIB'})) {
	    # Add the definition of libtool in case we're using
	    # libtool to provide the shared library.
	    printMakeVariable( FD, "LIBTOOL", "\@LIBTOOL\@" );
	    printMakeVariable( FD, "CREATESHLIB", "\@CREATESHLIB\@" );
	    printMakeVariable( FD, "ABIVERSION", "\@ABIVERSION\@" );
	    printMakeVariable( FD, "LIBS", "\@LIBS\@" );
	    printMakeVariable( FD, "LDFLAGS", "\@LDFLAGS\@" );
	    print FD "$shlibdefs{'c'}$newline";
	}
	elsif ($found_sharedlib) {
	    # No install target, but a shared library is being built
	    # Add the definition of libtool incase we're using
	    # libtool to provide the shared library.
	    printMakeVariable( FD, "LIBTOOL", "\@LIBTOOL\@" );
	    printMakeVariable( FD, "CREATESHLIB", "\@CREATESHLIB\@" );
	    printMakeVariable( FD, "LIBS", "\@LIBS\@" );
	    printMakeVariable( FD, "LDFLAGS", "\@LDFLAGS\@" );
	    print FD "$shlibdefs{'c'}$newline";
	    printMakeVariable( FD, "MKDIR_P", "\@MKDIR_P\@" );
	}
    }

    if (scalar(%install_files) || scalar(%optinstall_files)) { 
	print FD "INSTALL         = \@INSTALL\@$newline";
	print FD "INSTALL_PROGRAM = \@INSTALL_PROGRAM\@$newline";
        print FD "INSTALL_SCRIPT  = \@INSTALL_SCRIPT\@$newline";
	print FD "INSTALL_DATA    = \@INSTALL_DATA\@$newline";
	printMakeVariable( FD, "MKDIR_P", "\@MKDIR_P\@" );
    }

    # Directory definitions
    %dir_added = ();
    foreach $dir (keys(%dirs_seen)) {
	if (!defined($dir_added{$dir})) {
	    print FD "$dirdefs{$dir}$newline";
	    $dir_added{$dir} = 1;
	    if (defined($required_dirs{$dir})) {
		foreach $rdir (split(/\s+/,$required_dirs{$dir})) {
		    if (!defined($dir_added{$rdir})) {
			print FD "$dirdefs{$rdir}$newline";
			$dir_added{$rdir} = 1;
		    }
		}
	    }
	}
    }
    if (scalar(%install_files) || scalar(%optinstall_files)) {
	if (!defined($dir_added{'prefix'})) {
	    $dir_added{'prefix'} = 1;
	    print FD "$dirdefs{'prefix'}$newline";
	}
    }
    foreach $dir (keys(%install_files),keys(%optinstall_files)) {
	# Handle the derived dirs for the install directories
	$dir = $InstallDirFromKind{$dir};
	if (!defined($required_dirs{$dir})) {
	    print STDERR "Warning: No entry $dir in required_dirs\n"; 
	}
	foreach $rdir (split(/\s+/,$required_dirs{$dir})) {
	    if (!defined($dir_added{$rdir})) {
		print FD "$dirdefs{$rdir}$newline";
		$dir_added{$rdir} = 1;
	    }
	}
    }
    foreach $dir (keys(%install_files),keys(%optinstall_files)) {
	$dir = $InstallDirFromKind{$dir};
	if (!defined($dir_added{$dir})) {
	    #$resultdir = $dirdefs{$dir};
	    if (!defined($dirdefs{$dir})) {
		print STDERR "Warning: no entry $dir in dirdefs\n";
	    }
	    print FD "$dirdefs{$dir}$newline";
	    $dir_added{$dir} = 1;
	}
    }

    &InstallDocDirs;

    # Miscellaneous.  This needs to be improved.  This is really needed
    # only for some targets
    # The definition of DEFS is the same as for Automake
    if (defined($ext_seen{"c"}) || defined($ext_seen{"cxx"}) ||
	defined($ext_seen{"cpp"})) {
	if (!defined($makevars{'DEFS'})) {
	    printMakeVariable( FD, "DEFS", "\@DEFS\@ -I. -I\${srcdir}" );
	}
	# What to do about includes?  If they were set explicitly,
	# don't use the default.
	if (!defined($makevars{"INCLUDES"})) {
	    printMakeVariable( FD, "INCLUDES", $include_list );
        }
	if (!defined($makevars{"CPPFLAGS"})) {
	    printMakeVariable( FD, "CPPFLAGS", "\@CPPFLAGS\@" );
	}
    }
    # Add the LIBS if there are any programs to build
    if (scalar(%pgmlinktypes)) {
	if (!defined($makevars{"LIBS"})) {
	    printMakeVariable( FD, "LIBS", "\@LIBS\@" );
	}
    }

    # If there are subdirs, we need make.  Also needed by 
    #    shared library support
    #    profile library support
    #    postambles
    #    local targets
    #    install (but a subset of subdir)
    # so we always add MAKE (originally checked for $#subdirs >= 0
    # and $#doc_subdirs >= 0)
    if (! defined($makevars{"MAKE"}) ) {
	printMakeVariable( FD, "MAKE", "\@MAKE\@" );
    }

    # Add any standard definitions
    if ($commonmake ne "") {
	print FD "$commonmake$newline";
    }

    # Definitions for each possible program type seen
    $any_prog_def = 0;
    foreach $ext (keys(%ext_seen)) {
	print "ext seen is :$ext:\n" if $debug;
	$extkey = "$ext:o";
	if (defined($extdef{$extkey})) {
	    foreach $line (split(/\n/,$extdef{$extkey})) {
		# Check for an override
		if ($line =~ /^(\w+)(\s*)=(.*)/) {
		    my $var = $1;
		    my $spacing = $2;
		    my $value = $3;
		    if (defined($makevars{$var})) { 
			print "Using override definition of $var\n" if $debug;
			next; 
		    }
		    if (defined($PrependVar{$var})) {
			$line = "$var$spacing= " . $PrependVar{$var} . " $value";
		    }
		}
		print FD "$line$newline";
	    }
	}
	if (defined($pgmlinktypes{$ext})) {
	    # Allow the user to override the definition
	    my $def = $progdefs{$ext};
	    if ($def =~ /(\S+)\s*=.*/) {
		$def = $1;
	    }
	    if (!defined($makevars{$def})) {
		print FD "$progdefs{$ext}$newline";
	    }
	    $any_prog_def = 1;
	}
	if ($do_sharedlibs || $found_sharedlib) {
	    if ($#allshlibtargets >= 0) {
		# Only add the libtool definition if there are targets that
		# may need it.
		printMakeVariable( FD, "LIBTOOL", "\@LIBTOOL\@" );
		# We only need CREATESHLIB to finish off the library
		if (%shared_libraries) {
		    printMakeVariable( FD, "CREATESHLIB", "\@CREATESHLIB\@" );
		}
	    }
	    $extkey = "$ext:lo";
	    if (defined($extdef{$extkey})) {
		print FD "$extdef{$extkey}$newline";
	    }
	    else {
		print FD $newline;
	    }
		
	}
    }
    if ($any_prog_def) {
	# These are special definitions that are shared by all 
	# pgmlink types
	if (!defined($makevars{"LDFLAGS"})) {
	    my $otherflags = "";
	    if (defined($PrependVar{'LDFLAGS'})) {
		$otherflags = $PrependVar{'LDFLAGS'};
	    }
	    print FD "LDFLAGS     = $otherflags \@LDFLAGS\@ $ldadd_all$newline";
	}
    }
    print FD "$newline";
#    foreach $ext (keys(%pgmlinktypes)) {
#    }

    if ($vpath_config) {
        print FD '@VPATH@'; print FD "$newline";
    }
    else {
	# Some make programs require a specific directory, not a make
	# variable, in the VPATH specification
        print FD "VPATH = .:\@srcdir\@$newline";
    }

    &VariableDocs;
}

sub DefaultRules {

    # Add the compilation rules.  Include only those needed for the
    # given files.  Remove all default suffix rules
    if (scalar(%ext_seen)) {
	$suffixes = ".o";
	if ($maint_perf_targets && !($suffixes =~ /\.s/)) {
	    $suffixes .= " .s";
	}
	if ($do_sharedlibs || $found_sharedlib) { 
	    $suffixes .= " .lo";
	}
    }
    foreach $ext (keys(%ext_seen)) {
	$suffixes .= " .$ext";
    }
    
    # Finally, update suffixes from any other source.  Currently, this
    # handles the suffixes for document generation.
    &SuffixDocs;

    print FD ".SUFFIXES:$newline";
    # Grrr.
    # OSF1 make complains if there are no suffix items.  To make it happy,
    # *always* add .o .c
    if ("$suffixes $ExplicitSuffixes" ne " ") {
	print FD ".SUFFIXES: $suffixes $ExplicitSuffixes$newline";
    }
    else { 
	print FD "# Some make programs complain if no suffixes are set$newline";
	print FD ".SUFFIXES: .c .o$newline";
    }

    # To make it easier to build programs, conditionally add a 
    # default "build program" rule from the seen sourcecode extensions
    foreach $ext (keys(%ext_seen)) {
	# Skip any rules for .o files that we've seen
	if ($ext eq "o") { next; }
	# If we overrode the default rule for this key, then skip that
	# as well
	if (defined($usertargets{".$ext.o"})) { next; }
	print FD ".$ext.o:$newline";
	if ($found_profilelib) {
	    # Use a special rule when building the non-profile-lib version
	    $extkey = "$ext:o";
	    # COMMAND PRINTING
	    if (defined($extstring{$extkey})) {
		&PrintVerboseOptionCommand( "$extrules_with_profile{$extkey}",
					    "-", "$extstring{$extkey}" );
	    }
	    else {
		print FD "\t$extrules_with_profile{$extkey}$newline";
	    }	    
	}
	else {
	    $extkey = "$ext:o";
	    if (defined($extrules{$extkey})) {
		# COMMAND PRINTING
		if (defined($extstring{$extkey})) {
		    &PrintVerboseOptionCommand( "$extrules{$extkey}", "-",
						"$extstring{$extkey}" );
		}
		else {
		    print FD "\t$extrules{$extkey}$newline";
		}
	    }
	    else {
		print FD $newline;
	    }
	}
	if ($do_sharedlibs || $found_sharedlib) {
	    $extkey = "$ext:lo";
	    print FD ".$ext.lo:$newline";
	    if (defined($extrules{$extkey})) {
		# COMMAND PRINTING
		if (defined($extstring{$extkey})) {
		    # the lo rules have newlines in them, so we need to escape them,
		    # as well as remove any @ prefixes
		    my $escaped_rule = $extrules{$extkey};
		    $escaped_rule =~ s/$newline(\t+)\@*/ ; \\$newline$1echo /g;
		    &PrintVerboseOptionCommand( "$extrules{$extkey}", "-",
						"$extstring{$extkey}" );
		}
		else {
		    print FD "\t$extrules{$extkey}$newline";
		}
	    }
	}
	# For maintainers, make it easy to create the asm versions
	if ($maint_perf_targets) {
	    $extkey = "$ext:s";
	    if (defined($extrules{$extkey})) {
		print FD ".$ext.s:$newline";
		print FD "\t$extrules{$extkey}$newline";
	    }
	}
	if ($maint_targets) {
	    # Add the target that applies the preprocessor to the source file
	    $extkey = "$ext:txt";
	    if (defined($extrules{$extkey})) {
		print FD ".$ext.txt:$newline";
		print FD "\t$extrules{$extkey}$newline";
	    }
	}

	$extkey = "$ext:";
	# We may want to make this conditional, only generating it
	# when desired.
	if (defined($extrules{$extkey})) {
	    print FD ".$extkey$newline";
	    # COMMAND PRINTING
	    if (defined($extstring{$extkey})) {
		&PrintVerboseOptionCommand( "$extrules{$extkey}", "-", 
					    "$extstring{$extkey}" );
	    }
	    else {
		print FD "\t$extrules{$extkey}$newline";
	    }
	}
    }
    
    # Other generic rules.  Currently, only for documents
    &RuleDocs;

    # Configure update targets
    if ( -s "configure.in" && $maint_targets ) {
	# Convert ROOTDIR as necessary
	$aargs = $autoconf_args;
	if (!$rootdirpath || $rootdirpath eq "") {
	    $aargs =~ s/ROOTDIR/\./;
	}
	else {
	    #chomp( $rootdir =  $rootdirpath );
	    ( $rootdir =  $rootdirpath ) =~ s/[\r\n]*$//; # David added
		#strip( $rootdir = $rootdirpath );
	    $aargs =~ s/ROOTDIR/$rootdir/;
	}
	$aargs =~ s/\/\//\//;
	$autoconf_deps="";
	print "macro loc arg is $aargs\n" if $debug_confdir;
	# If there is a -l dir in the autoconf_args, then add that to the
	# dependencies (We use $acincdir_arg incase autoconf 2.57 is used,
	# in which case the argument is -I or -B, or in case autoconf 2.58
	# or later is used, in which case the argument may be changed again.
	# Argh.  In autoconf 2.59, -B doesn't work
	if ($aargs =~ /$acincdir_arg\s*([\.\/\w]*)/) {
	    $macroloc = $1;
	    # HACK.  If we've messed up the location, don't include it
	    if (-s "$macroloc/aclocal.m4") {
		$autoconf_deps .= "$macroloc/aclocal.m4";
		# Extract includes from aclocal.m4
		open (AFD, "<$macroloc/aclocal.m4" );
		while (<AFD>) {
		    if (/^\s*builtin\(include,([\w-]*\.m4)\)\s*$/) {
			$filename = "$macroloc/$1";
			$autoconf_deps .= " $filename";
		    }
		}
		close (AFD);
	    }
	}
	# Extract includes from configure.in
	open (AFD, "<configure.in" );
	while (<AFD>) {
	    if (/^\s*builtin\(include,([\w\-\/\.]*\.m4)\)\s*$/)
	    {
		$filename = $1;
		if (-s "$filename")
		{
		    $autoconf_deps .= " $filename";
		}
		elsif (($filename =~ /[^\.\/]+/) && defined($macroloc) && -s "$macroloc/$filename")
		{
		    $autoconf_deps .= " $macroloc/$filename";
		}
	    }
	}
	close (AFD);
	#
	print FD "$newline";
	$header_depend="";
	if ($configure_has_config_headers ne "no") {
	    $header_depend="\${srcdir}/$configure_has_config_headers ";
	    if ($debugConfigHeaderDepend) {
		print "Adding $header_depend to configure target\n";
	    }
	}
	&print_make_longline( FD,  "$header_depend \${srcdir}/configure: \${srcdir}/configure.in $autoconf_deps" );
	&print_make_setpos( 8 );
	&FindWorkingAutoconf ;
	# Use autoheader only if AC_CONFIG_HEADER is in the configure file
	# 
	# With Autoconf 2.57, there is a "cache" that like all automake
	# caches, isn't reliable and must be removed 
#	&print_make_longline( FD, "\t\@if [ -d autom4te.cache ] ; then rm -rf autom4te.cache ; fi" );
	# With some versions of autoconf, this cache has the version
	# number in it (!)
	&print_make_longline( FD, "\t\@rm -rf autom4te*.cache" );
	if ($configure_has_config_headers ne "no") {
	    &print_make_longline( FD,  "\t(cd \${srcdir} && $autoheader_prog $aargs && \\$newline\t$autoconf $aargs )" );
	}
	else {
	    &print_make_longline( FD,  "\t(cd \${srcdir} && $autoconf $aargs )" );
	}
	if ($fixup_autoconf_cd) {
	    # This is needed for DOS in case the pwd contains blanks
	    print FD "\t( cd \${srcdir} && sed -e 's/cd *\$\$ac_popdir/cd \"\$\$ac_popdir\"/g' configure > c.tmp ; mv -f c.tmp configure ; chmod a+x configure)$newline";
	}
    }
    if ($maint_targets && $smdir && $smdir ne "") {
	# FIXME: make smdir take a value from the Makefile.in (e.g,
	# $(top_abs_src)/maint instead of the location where it 
	# was originally run.
	print FD "$newline";
	print FD $makeBlockSep;
	print FD "\${srcdir}/Makefile.in: \${srcdir}/Makefile.sm$newline";
	print FD "\t( cd \${srcdir} && $smdir/simplemake \\$newline";
	if ($rootdir) {
	    print FD "\t-rootdir=$rootdir \\$newline";
	}
	print STDOUT "last_config_dir is $last_config_dir in $curdir\n" if $debug_confdir;
	if (defined($last_config_dir) && $last_config_dir ne "") {
	    print FD "\t-configdir=$last_config_dir \\$newline";
	}
	foreach $curarg (@keepargs) {
	    # Skip some special cases
	    if ($curarg =~ /^-smvar_doc_attop=0/) { next; }
	    # Must handle $ specially
	    $tmparg = $curarg;
#	    # FIXME: Should this be s/../g (change all instances)?
#	    $tmparg =~ s/\$/\\\$\$/;
	    if ($tmparg =~ /\s/) {
		print FD "\t\"$tmparg\" \\$newline";
	    }
	    else {
		print FD "\t$tmparg \\$newline";
	    }
	}
	if ($lcurdir && defined($autoconf_files_by_dir{$lcurdir})) {
	    print FD "\t-distcleanfiles=\"$autoconf_files_by_dir{$lcurdir}\" \\$newline";
	}
	print FD "\t-smvar_doc_attop=0 \\$newline";
	print FD "\t\tMakefile.sm )$newline";
	print FD "Makefile: \${srcdir}/Makefile.in$newline";

	# The following does not always work correctly.  There may be 
	# problem in handling jumps between directories
	my $real_last_config_dir = $last_config_dir;
	if (defined($makefile_configdir)) {
	    $real_last_config_dir = $makefile_configdir;
	    print "Replacing last config dir with $real_last_config_dir\n";
	}
	
	my $topdir = &GetPathToParent( $curdir, $real_last_config_dir );
 	print "last config dir = $real_last_config_dir, topdir = $topdir\n" if $debug_confdir;
 	if ($topdir eq "") {	
 	    $topdir = ".";
 	}

	# We need to use the enclosing configure, not always the top-level
	# configure.  Thus, we need to keep track of the directory of the
	# current configure, and the path to get to that configure.
	# We also allow this step to fail; for example, the 
	# config.status may already have been removed.
	# Further, to make the clean step cleaner, we test for the 
	# config.status file before trying to run it (using a simple
	# test -x config.status && ... works, but still generates noise
	# about ignoring a failing step.

	$ignore_step = "-";

	if ($topdir ne ".") {
	    print FD "\t-cd $topdir && \\$newline";
	    $ignore_step = "";
	}
	$relcurdir = $curdir;
	if ($real_last_config_dir) {
	    my $quoted_dir = quotemeta $real_last_config_dir;
	    $relcurdir =~ s/^$quoted_dir//;
	}
	print STDOUT "curdir is $curdir and relcurdir is $relcurdir\n" if $debug_confdir;

	print FD "\t${ignore_step}if [ -x config.status ] ; then CONFIG_FILES=${relcurdir}Makefile CONFIG_HEADERS= \${SHELL} ./config.status ; fi$newline";
	print FD $makeBlockSep;
    }
    # The following are general targets that can be used to run a program
    # specified on the make command line
    &TargetInit( "apply" );
    print FD "\n";
    print FD "\t\$(ACTION) \$(ACTION_INPUT)$newline";
    # ToDo: we could control the subdirectories over which the recursion
    # is applied.
    &RecursiveOp( "apply" );
    &TargetPostamble( "apply" );
    
    # Clean targets
    &TargetClean;
}

#
# ===========================================================================
#
# Look at a list of source files and determine the source types
#
# Eventually, make this $ext_seen{$extension} = 1, 
# then generate code by using keys(%ext_seen).  Allows general
# extensions and simpler handling of rules (like adding .F and .f90 )
sub FindSrcTypes {
    my $source = $_[0];
    my $files = "";
    foreach my $sym (split(/\s+/,$source)) {
	print STDERR "Is $sym a make variable?\n" if $debug;
	$vsym = $sym;
	if ($vsym =~ /\$[\{\(]?(\w*)[\}\)]?/) {
	    $vsym = $1;
	}
	if (defined($makevars{$vsym})) {
	    print STDERR "yes, value is $makevars{$vsym}\n" if $debug;
	    $files .= " $makevars{$vsym}";
	}
	else {
	    $files .= " $sym";
	}
    }
    foreach my $file (split(/\s+/,$files)) {
	($name,$ext) = split('\.',$file);
	if (defined($ext) && $ext ne "") {
	    $ext_seen{$ext} = 1;
	}
    }
}

# Save all conventional sources
# This is only approximate.
# We want to allow source files to be specified through other 
# variables (e.g., ${Foo_sources}).
# Globals: regular_sources, regular_headers
sub SaveSrcNames {
    my $source = $_[0];
    my @files;
    my $file;
    # First, expand the source variable
    #print STDERR "Got $source ...\n";
    foreach $file (split(/\s+/,$source)) {
	#print STDERR "Checking $file ...\n";
	# Substitute for any make variables (1 level of substitution)
	$file = &ExpandMakeVars( $file );
	foreach $name (split(/\s+/,$file)) {
	    $files[$#files+1] = $name;
	}
    }
    
    foreach $file (@files) {
	($name,$ext) = split( '\.',$file);
	if (defined($ext)) {
	    if (defined($extrules{"$ext:o"})) {
		$regular_sources .= " $file";
		$sources{$file} = 1;
	    }
	    elsif ($ext eq "h") {
		# FIXME: need to handle other header extensions; 
		# e.g., MPICH2 uses .i as well
		$regular_headers .= " $file";
		$headers{$file} = 1;
	    }
	}
    }
}

#
# Find the name of the source file that matches the program.
# If none found, use c as the type
sub FindPgmSrcType {
    $pgm = $_[0];
    $pgmsrc = $_[1];
    # Also keep track of the types seen
    my %exttypes;
    my $firstext = "";
    foreach $file (split(/\s+/,$pgmsrc)) {
	($name,$ext) = split('\.',$file);
	if ($name eq $pgm) {
	    $pgmlinktypes{$ext} = 1;
	    return $ext;
	}
	else {
	    $exttypes{$ext} = 1;
	    if ($firstext eq "") { $firstext = $ext; }
	}
    }
    if (defined($exttypes{"c"})) {
	$pgmlinktypes{"c"} = 1;
	return "c";
    }
    elsif (defined($exttypes{"cxx"})) {
	$pgmlinktypes{"cxx"} = 1;
	return "cxx";
    }
    elsif (defined($exttypes{"f90"})) {
	$pgmlinktypes{"f90"} = 1;
	return "f90";
    }
    else {
	$pgmlinktypes{$firstext} = 1;
	return $firstext;
    }
}

sub ClearVars {
    # Extensions seen is a property of the makefile
    %ext_seen = ();
    # We include abs_srcdir because it is useful to know and some
    # steps may conditionally need it (so we may not know that we also
    # need abs_srcdir until it is too late to add it)
    # We include abs_builddir because it is useful to have the
    # build directory around (particularly for the TAGS step)
    %dirs_seen = ( "srcdir" => 1, "abs_srcdir" => 1, "abs_builddir" => 1 );
    $other_vars = "";
    $other_text = "";
    $regular_sources = "";
    #$header_sources = "";
    $regular_headers = "";
    %sources = ();
    %headers = ();

    # Targets
    @alltargets = ();   # implicit targets 
    @allshlibtargets = (); # implicit shared library targets
    @alldlllibtargets = (); # implicit dynamically loaded library targets
    %altalltargets = ();   # related targets to items in alltargets
    %usertargets = ();  # explicit, user-defined targets
    %extra_programs = ();
    %extra_libs     = ();
    %libraries = ();
    $libcount = 0;
    %libnum    = ();    # Gives number associated with library
    %shared_libraries = ();
    %shared_libraries_exports = ();
    %shared_libraries_libs = ();
    %profile_libraries = ();
    %profile_libraries_basename = (); # inverse of profile_libraries
    %profile_library_sources = ();
    %install_files = ();
    @install_subdirs = ();
    %install_dirs = ();
    %optinstall_files = ();
    $install_local_dirs = "";
    $gIssuedInstallLocal = 0;
    %libNotShared = ();
    %external_libraries = ();
    $found_profilelib = 0;
    $found_sharedlib  = 0;
    $InitSharedLibraryFinal = 0;
    %programs = ();
    %pgm_ldadd = ();
    $ldadd_all = "";
    %pgm_depadd = ();
    $depadd_all = "";
    %altCompile = ();
    %altCompileSources = ();

    $gSubdirSMVarsSeen = "";

    # Variables
    # makevars are variables seen in the Makefile.sm
    # addedMakeVars are variables that have been added to the output
    # Makefile.in
    %PrependVar = ();
    %makevars = ();
    %addedMakeVars = ();
    # smmakevars are variables that have been defined as SM variables.
    %smmakevars = ();
    # vars_seen is a hash of the variables used in the makefile
    %vars_seen = ();
    # Information about program targets
    %pgmlinktypes = ();
    # Other directories
    @subdirs = ();
    %notSimplemakeDirs = ();
    %subdir_autoconf_vars = ();
    $subdir_optionals = "";
    @doc_subdirs = ();
    $docargsAdd = "";
    %docthiskinddir = ();
    @extra_dirs = ();
    @tags_dirs  = ();
    @other_dirs = ();
    $subdirs_has_autoconf = 0;
    # Suffix definitions
    $ExplicitSuffixes = "";
    $suffixes = "";

    # Document sources and directories
    %docdir = ();
    %docsrc = ();
    # These may be overriden on a file by file basis
    $autoconf = $autoconf_prog; # Name of autoconf program to use
    $autoconf_version = ""; # Any version is allowed
    # We cannot clear config_headers here because we may still
    # need to know that the configure in the current directory
    # has a header file, and this routine to clear vars is called for
    # every file.
    #$configure_has_config_headers = "no";
    %simplemake_vars = ();

    # For any extensions, clear their global variables.
    &SMInvokeAction( "Clear" );

}	

#
# Expand all of the make variables in an expression.  This
# lets users use targets like
# libmpich_SOURCE_a = ${MPI_SOURCES}
sub ExpandMakeVars {
    # look for ${\w*} and replace with the value of $makevars{$1}
    my $line = $_[0];
    print "Looking at $line\n" if $debug;

    if (!defined($line)) { return ""; }

    my $after = "";
    my $processed = "";
    while ($line =~ /([^\$]*)\$([{\(])(\w+)([}\)])(.*)/) {
	my $before = $1;
	my $lb   = $2;
	my $mvar = $3;
	my $rb   = $4;
	$after   = $5;
	print "replacing \$$lb$mvar$rb\n" if $debug;
	# Rescan the replacement in case it contains a variable.
	# Undefined variables are left in place
	if (defined($makevars{$mvar})) {
	    $processed .= $before;
	    $line = $makevars{$mvar} . $after;
	}
#	elsif (defined($dirdefs{$mvar})) {
#	    $processed .= $before;
#	    $line = $dirdefs{$mvar} . $after;
#	}
	else {
	    $processed .= $before . "\$$lb$mvar$rb";
	    $line      = $after;
	}
    }
    $processed .= $line;
    print "expanded to $processed\n" if $debug;
    return $processed;
}

#
# ===========================================================================
@config_dir = ();    # Stack of the location of the most recently seen
                     # configure script.  Used to create targets that
                     # need to run config.status from that directory.

$last_config_dir = "";

#
# ===========================================================================

# These next two routines let us print out the file being processed only
# when we need to (e.g., before an error message).
$curFilename = "";
$curFilenamePrinted = 0;
sub ResetFileName { 
    $curFilename = $_[0];
    $curFilenamePrinted = 0;
}
sub ShowFileName {
    if ($curFilenamePrinted) { return; }
    print "Processing $curdir$file\n" if (!$quiet && $debug_dirs);
    $curFilenamePrinted = 1;
}

sub ProcessFile {
    $file = $_[0];

    $gSubdirSMVarsSeen = "";

    # FIXME: curdir?
    if (!$curdir) { $curdir = ""; }
    &ResetFileName( "$curdir$file" );
    print "Processing $curdir$file\n" if (!$quiet && $debug_dirs);
    $configure_has_config_headers = "no";
    if (-s "configure.in") {
	&ReadAutoconf;
	print "Found configure.in in $curdir, set last_config_dir to $curdir\n" if $debug_confdir;
	if ($curdir eq "") { $last_config_dir = "."; }
	else {	$last_config_dir = $curdir; }
    }
    &ReadMfile( $file );
    $output_name = $file;
    if ($create_configure_input) {
	$output_name =~ s/\.sm$/.in/;
    }
    &WriteMfile( $output_name );
    
    if ($gCheckForTargets) {
	&checkForTargets();
    }

    # Process any subdirectories
    # The list of directories to process comes from the variables
    # defined in the Makefile.sm.  The following is the list
    my @dirs = (@subdirs,@other_dirs,@doc_subdirs,@tags_dirs);
    # Get a local copy of the "notsimplemake" hash
    my %notSimplemake = %notSimplemakeDirs;
    # First, check for names that are replaced by autoconf (e.g., @name@)
    # in the names of the directories.  For those variables, there should
    # be a corresponding SUBDIRS_name variable in the makefile that lists
    # *all* directories to which @name@ may be expanded by configure.
    my @actdirs = ();
    foreach my $dir (@dirs) {
	$sdir = $dir;
	print "Checking $sdir\n" if ($debug_dirs);
	if ($sdir =~ /@([^@]*)@/) {
	    $subst_name = $1;
	    $subdirs_has_autoconf = 1;
	    #print "Found $subst_name\n";
	    # Look up the special name
	    $var_name = "SUBDIRS_$subst_name";
	    #print "varname is $var_name\n";
	    if (defined( $makevars{$var_name} )) {
		# Concatenate the value of the variable name to the list
		# of directories
		@actdirs = ( @actdirs, split( /\s+/, $makevars{$var_name} ) );
	    }
	}
	else {
            $actdirs[$#actdirs+1] = $dir;
        }
    }

    # Push the saved subdir vars onto a stack, to be popped at the end.
    print "Saving $gSubdirSMVarsSeen\n" if $gDebugSubdirVar && ($gSubdirSMVarsSeen ne "");
    $subdirsSMVars[$#subdirsSMVars+1] = $gSubdirSMVarsSeen;
    
    # For each of the directories, process it.
    M: foreach my $dir (@actdirs) {
	if ($dir eq ".") { next M; }
	if ($dir =~ /\.\./ || $dir =~ /.\/./) {
	    # Skip directory changes that aren't simple
	    &ShowFileName;
	    print "$dir has .. in it (skipping)\n";
	    print "Current dir is $curdir\n" if $debug;
	    next M;
	    #exit(1);
	}
	if (! -d $dir) { 
	    my $ldir = `pwd`;
	    if (!defined($notSimplemake{$dir})) {
		&ShowFileName;
		print "Directory $curdir$dir does not exist\n"; 
		print "(Current location is $ldir)\n";
	    }
	    next M; }
	if (! -s "$dir/$file") { 
	    if (!defined($notSimplemake{$dir})) {
		print "File $curdir$dir/$file does not exist\n"; 
	    }
	    next M; }
	chdir $dir || die "Cannot change to directory $dir\n";
	$curdir .= "$dir/";
	$curdir = &CleanCurDir( $curdir );
	if ($dir =~ /\.\./) {
	    &ShowFileName;
	    print "changed to a non-obvious dir = $dir\n";
	    my $ldir = $dir;
	    while ($ldir =~ /^\.\.\//) {
		$rootdirpath =~ s/\.\.\/$//;
		$ldir =~ s/^\.\.\///;
	    }
	    while ($ldir =~ /^[^\/]+\//) {
		$rootdirpath .= "../";
		$ldir =~ s/^[^\/]+\///;
	    }
	    if ($ldir =~ /\S+/) {
		$rootdirpath .= "../";
	    }		
	}
	else {
	    $rootdirpath .= "../";
	}
	print "rootdir = $rootdirpath\n" if $debug_confdir;
	print "curdir = $curdir\n" if $debug_confdir;
	# Remember the last place that we saw a configure; push and
	# pop for each file that we process.
	$config_dir[$#config_dir+1] = $last_config_dir; 
	print "config stack has depth $#config_dir\n" if $debug_confdir;
	print "relative path to configure dir is " . &GetPathToParent( $curdir, $last_config_dir ) . "\n" if $debug_confdir;
	&ProcessFile( $file );
	$last_config_dir = $config_dir[$#config_dir]; $#config_dir--;
	print "after processing, last_config_dir = $last_config_dir\n" if $debug_confdir;
	print "config stack has depth $#config_dir\n" if $debug_confdir;
	$rootdirpath =~ s/\.\.\/$//;
	chdir "..";
	$curdir =~ s/[^\/]*\/$//;
	$curdir = &CleanCurDir( $curdir );
    }
    # End of processing directories

    # Restore any variables that were changed for the scope of this directory
    # subtree (emulate a stack; don't trust perls dynamic scoped local)
    my $subdirvars = $subdirsSMVars[$#subdirsSMVars]; $#subdirsSMVars--;
    if (!defined($subdirvars)) {
	print STDERR "subdirsSMVars stack count = $#subdirsSMVars in $curdir\n";
	print STDERR "previous value is $subdirsSMVars[$#subdirsSMVars]\n";
    }
    foreach my $varstring (split(/;/,$subdirvars)) {
	if ($varstring =~ /(\w+)=(.*)/s) {
	    my $varname = $1;
	    my $varvalue = $2;
	    print "Restoring $$varname to $varvalue in $curdir\n" if $gDebugSubdirVar;
	    $$varname = $varvalue;
	}
	elsif ($varstring ne "") {
	    print STDERR "Internal Error: varstring = $varstring\n";
	}
    }			       
}

sub ListTargets {
  foreach $target (@alltargets) {
      # Skip the extra programs
      if (defined($extra_programs{$target})) { next; }
      if (defined($extra_libs{$target})) { next; }
      # Add any alternate target (used for targets in other directories
      # to work around timestamp problems).
      if (defined($altalltargets{$target})) {
	  print_make_line( FD, " " . $altalltargets{$target} );
      }
      print_make_line( FD,  " $target" );
  }
}


#
# Add to a target the designate operation in all subdirs (except for .)
#     &RecursiveOp( "target" [, optional array of directories, [checkMakefile] ] );
# If the array of directories is not included, (@extra_dirs,@subdirs) 
# is used.  These are the arrays maintined by simplemake of the 
# directories set by EXTRA_DIRS and SUB_DIRS.  The "optional array"
# is passed by name (i.e., the name of the array is passed, not the array
# itself).
#
# The third argument allows you to only execute the test if the
# Makefile is present.  This is used in the distclean targets and 
# may be useful elsewhere.
#
# Special notes:
#    For a small number of directories, use a simpler (non loop) approach
#    
sub RecursiveOp {
    my $target = $_[0];
    my $subdirname = $_[1];
    my $checkForMakefile = $_[2];
    my $addDirs = $_[3];
    my $skipDirs = $_[4];
    my $forThreashold = 3;

    if (!defined($checkForMakefile) || $checkForMakefile eq "") {
	$checkForMakefile = 0;
    }
    # Get the optional arrays
    if (defined($subdirname) && $subdirname ne "") {
	@dirs = @$subdirname;
    }
    else {
	@dirs = (@extra_dirs, @subdirs);
    }
    if (defined($addDirs) && $addDirs ne "") {
	foreach $dir (split(/\s+/,$addDirs)) {
	    $dirs[$#dirs+1] = $dir;
	}
    }

    # If notDirs is defined, then remove all matches from the @dirs array
    if (defined($notDirs) && $notDirs ne "") {
	my %skipHash = ();
	foreach $dir (split(/\s+/,$notDirs)) {
	    $skipHash{$dir} = 1;
	}
	my @newdirs = ();
	foreach $dir (@dirs) {
	    if (defined($skipHash{$dir})) { next; }
	    $newdirs[$#newdirs + 1] = $dir;
	}
	@dir = @newdirs;
    }

    # Entries that are shell or autoconf variables have unknown count.
    # 
    my $dirlistHasVariable = 0;
    foreach $dir (@dirs) {
	if ($dir =~ /@[^@]*@/) {
	    $dirlistHasVariable = 1;
	}
	elsif ($dir =~ /\$/) {
	    $dirlistHasVariable = 1;
	}
    }

    print "n dirs = $#dirs\n" if $debug;
    if ($#dirs == 0 && $dirs[0] eq ".") { return; }
    if ($#dirs >= $forThreashold || $subdirs_has_autoconf ||
	$dirlistHasVariable) { 
        print FD "\tfor dir in";
        foreach $dir (@dirs) {
	    if ($dir ne ".") { print FD " $dir"; }
	    if ($dir =~ /@[^@]*@/) {
		$subdirs_has_autoconf = 1;
	    }	    
        }
	# We may also want to check if subdirs is *only* autoconf; 
	# if not, we don't need the -
	if ($subdirs_has_autoconf) {
	    # Add a - incase there is a problem
	    print FD " - ; do \\$newline";
	    print FD "\t\tif [ \"\$\$dir\" = \"-\" ] ; then break ; fi ; \\$newline";
        }	
	else {
	    print FD " ; do \\$newline";
	}
	if ($checkForMakefile) {
	    print FD "\t\tif [ ! -s \$\$dir/Makefile ] ; then continue ; fi ;\\$newline";
	}
	if (defined($notDirs) && $notDirs ne "" && $dirlistHasVariable) {
	    foreach $ndir (split(/\s+/,$notDirs)) {
		print FD "\t\tif [ \"\$\$dir\" = \"$ndir\" ] ; then continue ; fi ;\\$newline";
	    }
	}
	print FD "\t\t(cd \$\$dir && \${MAKE} $target ) ; done$newline";
    }
    elsif ($#dirs >= 0) {
	foreach $dir (@dirs) {
	    # Skip . and any empty names
	    if ($dir ne "." && $dir =~ /\S/) {
		if ($checkForMakefile) {
		    print FD "\tif [ -s $dir/Makefile ] ; then (cd $dir && \${MAKE} $target ) ; fi$newline";
		}
		else {
		    print FD "\t(cd $dir && \${MAKE} $target )$newline";
		}
	    }
	}
    }
}

# A version of RecuriveOps for optional directories; this is careful
# to check for existence of both the directory and the Makefile
# RecursiveOpForOptionalDirs( dirs, target, checkmake )
sub RecursiveOpForOptionalDirs {
    my $subdirs = $_[0];
    my $target = $_[1];
    my $checkForMakefile = $_[2];

    my $forThreshold = 3;

    if ($subdirs ne "") {
	# Count the number of directories
	my @sdirs = split(/\s+/,$subdirs);
	if ($#sdirs >= $forThreshold) {
	    print FD "\t-\@for dir in $subdirs ; do \\$newline";
	    print FD "\t    if [ -s \$\$dir/Makefile ] ; then \\$newline";
	    print FD "\t      (cd \$\$dir && \${MAKE} $target ;) ; fi ; \\$newline";
	    print FD "\tdone$newline";
	}
	else {
	    foreach my $dir (@sdirs) {
		if ($dir ne "." && $dir =~ /\S/) {
		    if ($checkForMakefile) {
			print FD "\tif [ -s $dir/Makefile ] ; then (cd $dir && \$(MAKE) $target ) ; fi$newline";
		    }
		    else {
			print FD "\t(cd $dir && \$(MAKE) $target )$newline";
		    }
		}
	    }
	}
    }
}

#
# Return the directory in which the named library should be in
sub GetLibLoc {
    my $libname = $_[0];
    
    my $libloc = "";
    if (defined($libdir{$libname})) {
	$libloc = $libdir{$libname};
	my $rootdir;
	if (!defined($rootdirpath)) {
	    $rootdir = "."
	    }
	else {
	    $rootdir = $rootdirpath;
	    $rootdir =~ s/\r?\n?$//; # strip off any newlines
	}
	$libloc =~ s/ROOTDIR/$rootdir/;
	# Remove duplicated //
	$libloc =~ s/\/\//\//;
    }

    return $libloc;
}


#
# Look for autoconf directory variables that are used 
sub LookForAutoconfDirs {
    $line = $_[0];
    print "Looking at $line\n" if $debug;
    # Look for \$\{\w*\} and \$\(\w*\) 
    while ($line =~ /^[^\$]*\$(.*)/) {
	$line = $1;
	if ($line =~ /^\$\w+(.*)/) {
	    # This is a shell variable; skip it
	    $line = $1;
	}
	elsif ($line =~ /^[\{\(](\w+)[\}\)](.*)/) {
	    $varname = $1;
	    $line    = $2;
	    print "Found $varname in line\n" if $debug;
	    # Look for varname in the known names; add to dirs_seen
	    if (defined($dirdefs{$varname})) {
		print "Adding $varname to dirs_seen\n" if $debug;
		$dirs_seen{$varname} = $varname;
	    }
	}
	else {
	    last;
	}
    }
}

#
# Look for make variables that are used 
sub LookForVariables {
    $line = $_[0];
    print "Looking at $line\n" if $debug;
    # Look for \$\{\w*\} and \$\(\w*\) 
    while ($line =~ /^[^\$]*\$(.*)/) {
	$line = $1;
	if ($line =~ /^\$\w+(.*)/) {
	    # This is a shell variable; skip it
	    $line = $1;
	}
	elsif ($line =~ /^[\{\(](\w+)[\}\)](.*)/) {
	    $varname = $1;
	    $line    = $2;
	    print "Found $varname in line\n" if $debug;
	    $vars_seen{$varname} = 1;
	}
	else {
	    last;
	}
    }
}

sub LookForSuffixes {
    $line = $_[0]; 
    while ($line =~ /^[^\.]*\.(\w*)\s*(.*)$/) {
	$suffix = $1;
	$line   = $2;
	# For now, only check for suffixes that lead to .o files.
	# Later we can check the keys of extdef to see if they
	# match /$ext:.*/
	if (defined($extdef{"$suffix:o"})) {  
	    $ext_seen{$suffix} = 1;
	}
    }
}

#
# ===========================================================================
# The "all" target.
#
# Output the target list.  If there are extra_programs or 
# extra_libs, note that.
# FIXME: there needs to be way to specify other local targets
# beyond the implicitly determined ones.  This needs to allow
# for both pre and post implicit target values
#
sub TargetAll {
    print_make_line( FD,  "all-redirect:" );
    if ($#subdirs > -1) {
	# If there are subdirectories, we must descend into them.
	# This branch does that, after adding the dependencies for the
	# target (if any).
	&TargetPreamble( "all" );
	print_make_endline( FD );
	# Now add the steps for the subdirectories
	$has_dot = 0;
	foreach $dir (@extra_dirs, @subdirs) {
	    if ($dir eq ".") {
		if (scalar(@alltargets) || 
		    defined($usertargets{"all-local"})) {
		    $has_dot = 1;
		    print FD "\t\${MAKE} all-local$newline";
		}
	    }
	    elsif ($dir =~ /@([^@]*)@/) {
		# May be a replaced variable
		print FD "\t${quietmake}for dir in $dir - ; do \\$newline";
		print FD "\t\tif [ \"\$\$dir\" = \"-\" ] ; then break ; fi ; \\$newline";
		print FD "\t\tif ( cd \$\$dir && \${MAKE} all ) ; then : ; else exit 1; fi \\$newline";
		print FD "\tdone$newline";
	    }
	    else {
		print FD "\t${quietmake}(cd $dir && \${MAKE} all )$newline";
	    }
	}
	# If subdirs has no dot but there are local targets, add an 
	# implicit dot to the end.
	if (!$has_dot && $#alltargets > -1) {
	    $has_dot = 1;
	    print FD "\t\${MAKE} all-local$newline";
	}
	
	if ($has_dot && !defined($usertargets{"all-local"})) {
	    # Add the default definition of all-local for the case where
	    # a . is in the SUBDIR line
	    print_make_line( FD, "all-local:" );
	    &ListTargets;
	    # ListTargets does *not* end the line
	    print_make_endline( FD );
	    # Add generation of shared libraries if necessary
	    &TargetAllCommandsForSharedLibs;
	    &TargetAllCommandsForDLLLibs;
	}
	
	#  Create the final shared library (typically .so) from the .la file
	if (defined($optinstall_files{'SHLIB'})) {
	    # Conditionally create the shared libraries.
	    print FD "\t\@if [ \"\@ENABLE_SHLIB\@\" != \"none\" ] ; then \\\n";
	    foreach $libspec (split(/\s+/,$optinstall_files{'SHLIB'})) {
		if (defined($extra_libs{$libspec})) { next; }
		# Be careful of library names that are related to
		# the profile library (those libraries are built
		# as part of the "master" library name build)
		my $baselibname = $libspec;
		$baselibname =~ s/^.*\///g;
		$baselibname =~ s/^lib//;
		$baselibname =~ s/\..*//;
		# We need to be careful about the optional files, since
		# the prerequisites may not exist
		# We could either test on the conditions under which
		# the optional files should exist (this is probably the
		# best option), or we can coordinate with the
		# target that we invoke for each case.  We'll do the
		# latter for now and consider adding an optional predicate
		# that can be supplied for each OPTINSTALL item.
		if (!defined($profile_libraries_basename{$baselibname})) {
		    print "Building sharedlib library $baselibname (from $libspec) as part of all-redirect\n" if $gDebugWhy;
		    # Get the condition
		    my $prereq = $libspec;
		    $prereq =~ s/\.\@SHLIB_EXT\@/.la/;
		    print FD "\t    if [ -s $prereq ] ; then \\\n";
		    print FD "\t        echo \"make $libspec\" ;\\\n";
		    print FD "\t        \${MAKE} $libspec ; \\\n";
		    print FD "\t    fi ; \\\n";
		}
	    }
	    print FD "\tfi\n";
	}
	if (defined($optinstall_files{'DLLLIB'})) {
	    #print STDOUT "in optinstall_files dlllib\n";
	    # Conditionally create the dynamically loadable shared libraries.
	    print FD "\t\@if [ \"\@BUILD_DLLS\@\" = \"yes\" ] ; then \\\n";
	    foreach $libspec (split(/\s+/,$optinstall_files{'DLLLIB'})) {
		# Be careful of library names that are related to
		# the profile library (those libraries are built
		# as part of the "master" library name build)
		my $baselibname = $libspec;
		$baselibname =~ s/^.*\///g;
		$baselibname =~ s/^lib//;
		$baselibname =~ s/\..*//;
		# We need to be careful about the optional files, since
		# the prerequisites may not exist
		# We could either test on the conditions under which
		# the optional files should exist (this is probably the
		# best option), or we can coordinate with the
		# target that we invoke for each case.  We'll do the
		# latter for now and consider adding an optional predicate
		# that can be supplied for each OPTINSTALL item.
		if (!defined($profile_libraries_basename{$baselibname})) {
		    print "Building sharedlib library $baselibname (from $libspec) as part of all-redirect\n" if $gDebugWhy;
		    # Get the condition
		    my $prereq = $libspec;
		    $prereq =~ s/\.\@SHLIB_EXT\@/.la/;
		    print FD "\t    if [ -s $prereq ] ; then \\\n";
		    print FD "\t        echo \"make $libspec\" ;\\\n";
		    print FD "\t        \${MAKE} $libspec ; \\\n";
		    print FD "\t    fi ; \\\n";
		}
	    }
	    print FD "\tfi\n";
	}
	&TargetPostamble( "all" );
    }
    else {
	# This is a leaf, so we can list the dependencies.  
	&TargetPreamble( "all" );
	if (defined($usertargets{"all-local"})) {
	    # Add all-local as a target
	    print_make_line( FD, " all-local " );
	}
	&ListTargets;
	if ($found_profilelib) {
	    print_make_endline( FD );
	    # Add a conditional step
	    print FD "\t\@if [ -n \"\@NO_WEAK_SYM\@\" ] ; then \\\n";
	    foreach my $lib (keys(%profile_libraries)) {
		my $proflib = $profile_libraries{$lib};
		my $libstamp = ".libstamp" . $libnum{$proflib};
#		my $libloc = &GetLibLoc( $lib );
#		my $fullname = "${libloc}lib$proflib.a";
#		print FD "\t    \${MAKE} $fullname ; \\\n";
		print FD "\t    \${MAKE} $libstamp || exit 1; \\\n";
	    }
	    print FD "\tfi";
	}
	print_make_endline( FD );
	&TargetAllCommandsForSharedLibs;
	&TargetAllCommandsForDLLLibs;
	&TargetPostamble( "all" );
    }
    print_make_endline( FD );
} # TargetAll
# ---------------------------------------------------------------------------
# Routines to provide standard extensions through -preamble, -postamble,
# and -local
# -preamble allows you to *ADD* a step to be performed before the other
# dependencies, -postamble adds a step after the target is formed
#
# To ensure uniform handling of -preamble, the routine TargetInit( name )
# outputs the target and the preamble.
sub TargetInit {
    my $name = $_[0];
    print FD "$name: ";
    &TargetPreamble( $name );
}
sub TargetPreamble {
    my $name = $_[0];
    $name .= "-preamble";
    if (defined($usertargets{$name})) { 
	print FD " $name";
    }
}
sub TargetPostamble { 
    my $name = $_[0];
    $name .= "-postamble";
    if (defined($usertargets{$name})) { 
	print FD "\t\${MAKE} $name$newline";
    }
}
# --------------------------------------------------------------------------
# Helper routines for the implementation of the "all" target.  Two
# complications here are that the handling of leaf Makefile.sm (those with 
# no SUBDIRS) and non-leaf Makefile.sm are different for the "all" target.
# (a better long-term solution may be to redesign the handling of the all
# target).
# --------------------------------------------------------------------------

# Add the commands to build shared libraries if any are defined 
# (either explicitly or because we generate shared libraries for all
# libraries).
sub TargetAllCommandsForSharedLibs {
    if ($do_sharedlibs && $#allshlibtargets >= 0) {
	# Add a conditional step
	print FD "\t\@if [ \"\@ENABLE_SHLIB\@\" != \"none\" ] ; then \\\n";
	foreach $shlib (@allshlibtargets) {
	    if (defined($extra_libs{$shlib})) { next; }
	    # Get the library stamp name from the lib name
	    my $libbase = $shlib;
	    if ($shlib =~ /.*\/lib([^\/]*)/) {
		$libbase = $1;
	    }
	    my $libstamp = $shlib;
	    if (defined($libnum{$libbase})) {
		$libstamp = ".libstamp" . $libnum{$libbase};
	    }
	    print FD "\t    \${MAKE} $libstamp || exit 1; \\\n";
	}
	if ($found_profilelib) {
	    print FD "\t    if [ -n \"\@NO_WEAK_SYM\@\" ] ; then \\\n";
	    foreach my $lib (keys(%profile_libraries)) {
		my $proflib = $profile_libraries{$lib};
		my $libloc = &GetLibLoc( $lib );
		my $fullname = "${libloc}lib$proflib.la";
		my $libstamp = ".libstamp" . $libnum{$proflib.".la"};
		print FD "\t        \${MAKE} $libstamp || exit 1; \\\n";
#		print FD "\t        \${MAKE} $fullname ; \\\n";
	    }
	    print FD "\t    fi ; \\\n";
	}
	print FD "\tfi\n";
    }
}

sub TargetAllCommandsForDLLLibs {
    if ($do_sharedlibs && $#alldlllibtargets >= 0) {
	# Add a conditional step
	print FD "\t\@if [ \"\@BUILD_DLLS\@\" = \"yes\" ] ; then \\\n";
	foreach $shlib (@alldlllibtargets) {
	    # Get the library stamp name from the lib name
	    my $libbase = $shlib;
	    if ($shlib =~ /.*\/lib([^\/]*)/) {
		$libbase = $1;
	    }
	    my $libstamp = $shlib;
	    if (defined($libnum{$libbase})) {
		$libstamp = ".libstamp" . $libnum{$libbase};
	    }
	    print FD "\t    \${MAKE} $libstamp || exit 1; \\\n";
	}
	print FD "\tfi\n";
    }
}

# --------------------------------------------------------------------------
#
# ===========================================================================
# The "clean" target
# 
# Produces clean:, distclean:, and maintainerclean:
# If clean-local, distclean-local, or maintainer-clean-local were defined, 
# they are included in the dependency lists
# 
# The default for quietLine makes the clean lines quiet (no echo of the
# command).
#
# Notes:
# The clean target is relatively easy, because it involves only files
# created *after* the configure step.  
# The distclean and maintainer-clean steps are more complicated, because
# there is some interaction with the generated steps.  In particular,
# distclean must remove Makefile, but once the makefiles are gone, 
# you can't execute another make step.  If you run maintainer-clean first,
# the the dependencies on Makefile:Makefile.in:Makefile.sm will force
# a reconstruction of some of the files that were just removed.
# Thus, we need to separate from the distclean and maintainer-clean targets
# the steps that remove the makefiles.  Thus, we have the
# following intermediate targets:
#    remove-makefile
#    remove-genmakefiles
# To simplify the construction of the targets, we use internal targets.
# Thus, distclean becomes:
# distclean: clean distclean-local distclean-xxx remove-makefile
#
# and maintainer-clean becomes
# maintainer-clean: clean maintainer-clean-local distclean-local \
#     distclean-xxx maintainer-clean-xxx remove-genmakefiles
# 
#
#
sub TargetClean {
    my $otherMakefiles = "";

    $programnames = join( ' ', keys(%programs));
    &TargetInit( "clean" );
    if (defined($usertargets{"clean-local"})) { print FD " clean-local"; }
    print FD "$newline";
    print FD "\t-${quietLine}rm -f *.o \${srcdir}/*.o $programnames$newline";
    &LibraryTimestampClean;
    # Add Windows names of executables
    if ($programnames ne "") {
	print FD "\t-${quietLine}rm -f";
	foreach $name (split(/\s+/,$programnames)) {
	    print FD " $name.exe";
	}
	print FD "$newline";
	# Remove core files, including core files with process numbers 
	# (produced by some versions of Linux)
	print FD "\t-${quietLine}rm -f core core.[0-9]*$newline";
    }

    # Output this in all cases to clear any old files.  
    # (Don't make this conditional because it is important to remove
    # these files even if we're not building for enabling shared libraries
    # this time around.
    print FD "\t-${quietLine}rm -f *.lo \${srcdir}/*.lo$newline";

    # Clean coverage analysis files
    &GcovClean;

    # We can put a hook here to add additional clean targets.  For 
    # the moment, we'll add an MPICH-2 specific target for this
    if ($programnames ne "") {
	# Testing of parallel program may produce log files.  This will remove
	# any existing irlog files
	print FD "\t-${quietLine}rm -f *.irlog*$newline";
    }

    if ($maint_perf_targets) {
	# In this case, we want to remove any generated asm files, 
	# to prevent them from being used in preference to the 
	# original (e.g., C) source file
	my $input_sources;
	if ($regular_sources =~ /\S/) {
	    $input_sources = $regular_sources;
	}
	elsif (defined($makevars{'SOURCES'})) {
	    $input_sources = $makevars{'SOURCES'};
	}
	if (defined($input_sources)) {
	    my $clean_files = "";
	    foreach my $file (split(/\s+/,$input_sources)) {
		if ($file =~ /(.*)\.([^\.]+)/) {
		    my $base = $1;
		    my $ext  = $2;
		    if ($ext ne "s") {
			$clean_files .= " $base.s";
		    }
		}
	    }
	    if ($clean_files ne "") {
		print FD "\t-${quietLine}rm -f $clean_files$newline";
	    }
	}
    }

    # For any extensions, handle the clean actions
    &SMInvokeAction( "OutputClean", FD );

    # Finally, execute make clean in any subdirs
    &RecursiveOp( "clean" );
    &TargetPostamble( "clean" );

    # --------------------------------------------
    # distclean target
    &TargetInit( "distclean" );
    print FD " clean";
    if (defined($usertargets{"distclean-local"})) { 
	print FD " distclean-local";
    }
    print FD " distclean-xxx remove-makefile";
    &TargetPostamble( "distclean" );

    print FD "$newline";
    
    print FD "distclean-xxx:$newline";
    # RecursiveOp uses extra_dirs,subdirs; the "1" forces it to check
    # for the existence of the Makefile
    &RecursiveOp( "distclean", "", 1 );

    # Add clean of local libraries
    foreach $lib (keys(%extra_libs)) {
	print FD "\t-${quietLine}rm -f $lib$newline";
	if ($do_sharedlibs && !defined($libNotShared{$lib})) {
	    my $libshared = $lib;
	    $libshared =~ s/\.a/.la/;
	    print FD "\t-${quietLine}rm -f $libshared$newline";
	}
    }

    # Remove any local files last (in case this file is one of them)
    $rmfile = "";
    if (!$curdir) { $curdir = ""; }
    $lcurdir = $curdir;
    $lcurdir =~ s/\/$//;
    if (defined($autoconf_files_by_dir{$lcurdir})) {
	$rmfile = $autoconf_files_by_dir{$lcurdir};
	# Remove the Makefile.in from this list because it will
	# be handled separately
	if ($rmfile =~ /Makefile.in/) {
	    $otherMakefiles .= "Makefile.in ";
	    $rmfile =~ s/Makefile.in\s*//;
	}
	print FD "\t-${quietLine}rm -f $rmfile$newline";
	# Remove the configure cache that autoconf 2.57+ adds
	print FD "\t-${quietLine}rm -rf autom4te*.cache$newline";
    }
    if ($configure_has_config_headers ne "no") {
	# Add the AC_CONFIG_HEADER file, if any.
	print FD "\t-${quietLine}rm -f $configure_has_config_headers$newline";
    }
    # Handle files that aren't part of subdirs
    if (defined($autoconf_files_by_dir_orig{$lcurdir})) {
        my $otherfiles = $autoconf_files_by_dir_orig{$lcurdir};
	foreach $dir (@subdirs) {
	    $otherfiles =~ s/ $dir\/\S*//g;
	}
	$otherfiles =~ s/^\s*//;
	# Is there anything left?
	if ($otherfiles =~ /\S+/) {
	    print FD "\t-${quietLine}rm -f $otherfiles$newline";
	}
    }
    
    # For any extensions, handle the clean actions
    &SMInvokeAction( "OutputDistClean", FD );

    # Another difficulty are the optional directories.  For example,
    # a SUBDIRS = foo \@bar\@ 
    # line (without the \, included since the simplemake.in file is
    # itself processed with autoconf)
    &RecursiveOpForOptionalDirs( $subdir_optionals, "distclean", 1 );

    &DistCleanDependencies;

    if ($distcleanfiles ne "") {
	print FD "\t-${quietLine}rm -f $distcleanfiles$newline";
    }
    print FD "\t-${quietLine}rm -f TAGS$newline";

    # --------------------------
    if ($maint_targets) {
	# Should maintainer-clean also perform a distclean?
	# No, because distclean needs to remove the Makefiles, and 
	# this target needs to remove entries that have dependencies
	# (e.g., the Makefile : Makefile.in : Makefile.sm dependency)
	&TargetInit( "maintainer-clean" );
	if (defined($usertargets{"maintainer-clean-local"})) {
	    print FD " maintainer-clean-local";
	}
	print FD " distclean-xxx remove-genmakefiles";
	&TargetPostamble( "maintainer-clean" );
	print FD "$newline";

	# For any extensions, handle the clean actions
	&SMInvokeAction( "OutputMaintainerClean", FD );

	&RecursiveOp( "maintainer-clean" );
	# Remove the file that simplemake creates
	$otherMakefiles .= " $output_name";
	#print FD "\t-rm -f $output_name$newline";
	# eventually, this should also invoke distclean, but it must
	# do that only once (not recursively) and only after all other
	# uses of the Makefile, since distclean removes the Makefile
	# Directories containing autoconf should include an rm of configure

	# This should also remove any files that will be created with
	# autoheader.  We'll need to check for files that are created
	# by autoheader, not just rely on the AC_CONFIG_HEADER command,
	# since some headers may be created by hand.  We'll ignore
	# this for now, since we uniformly use autoheader (and
	# simplemake runs autoheader if it finds AC_CONFIG_HEADER)
	if ($configure_has_config_headers ne "no") {
	    print FD "\t-rm -f ";
	    foreach $file (split(/\s+/,$configure_has_config_headers)) {
		print FD "$file.in ";
	    }
	    print FD "$newline";
	}
	# We also need to remove configure and autom4ate/ if present
    }
    &TargetRmMakefiles( $otherMakefiles );

}

#
# Generate the makefile removal targets
# TargetRmMakfiles( otherMakefiles )
#
# These are *NOT* recursive targets because they are local to the
# particular directory.
sub TargetRmMakefiles {
    my $otherMakefiles = $_[0];
    print FD "remove-makefile:$newline";
    print FD "\trm -f Makefile$newline";
    print FD "remove-genmakefiles:$newline";
    print FD "\trm -f $otherMakefiles Makefile$newline";
}
#
# Generate the core part of the distclean target
sub TargetDistclean {
}
#
# ===========================================================================
# Libraries
#
# We want to generate either a generic "update library from object files"
# or "update library member" for makes that support that feature (this 
# is normally used only for the maintenance target).

#
# LibraryBuild ( libname, libloc, libfiles, lib extension, member extension )
# FIXME: Not quite right.  Need to include the update command as well as ways
# to handle the "special extensions", both for the library (e.g., .a vs. .la)
# and members (e.g., .o vs .lo)
sub LibraryBuild {
    my $libname = $_[0];
    my $libloc  = $_[1];
    my $sourcefiles = $_[2];
    my $libext = $_[3];
    my $memext = $_[4];

    if (!$dolib_member) {
	&print_make_line( FD, "${libloc}lib$libname.$libext: " );
    }
    # Handle any variables in the lib line
    if (!defined($sourcefiles)) { 
	print STDERR "Warning: no source files in library $libname in LibraryBuild\n";
    }
    $sourcefiles = &ExpandMakeVars($sourcefiles);
    foreach $sourcefile (split(/\s+/,$sourcefiles)) {
	$ext = "";
	$obj = "";
	if ($sourcefile =~ /(.*)\.([^\.]*)/) {
	    $obj = "$1.$memext";
	    $ext = $2;
	}
	else {
	    # Don't warn about autoconf variables (see below)
	    if (! ($sourcefile =~ /^\@/) ) { 
		print STDERR "Sourcefile is $sourcefile\n";
	    }
	}
	# The special case for an extension of h handles the case where the
	# .h files are derived, and hence have special rules for creating
	# them.  We also ignore autoconf variables (eventually, we might
	# want to insist that valid values for that autoconf variable be
	# available).
	if ( (!defined($extrules{"$ext:o"}) && ($ext ne "h") &&
	      ! ($sourcefile =~ /^\@/))) { 
	    # Sometimes we use our own rules for building objects.
	    # We allow the user to specify the object files rather than
	    # the source files
	    if ($ext ne "o") {
		print STDERR "Unknown extension $ext for $sourcefile for library $libname\n";
	    }
	}
	
	if ($dolib_member) {
	    &print_make_line( FD, "${libloc}lib$libname.$libext($obj): $obj" );
	    &print_make_endline( FD );
	    # COMMAND PRINTING
	    &PrintVerboseOptionCommand( "\${AR} cr ${libloc}lib$libname.$libext \$?", "  AR" );
	}
	else {
	    if ($ext ne "h") {
		&print_make_line( FD, "$obj " );
	    }
	}
    }
    &SMInvokeAction( "OutputLibDependencies", $lib, $libloc, $memext );
    if (!$dolib_member) {
        &print_make_endline( FD );
	&PrintVerboseOptionCommand( "\${AR} cr ${libloc}lib$libname.$libext \$?",
				    "  AR" );
    }
}

sub TargetLibraries {
    foreach $lib (keys(%libraries)) {
	my $libloc = &GetLibLoc( $lib );
	if (!defined($libraries{$lib})) { next; }

	my $sourcefiles = &ExpandMakeVars($libraries{$lib});

	&BuildSpecialObjs( $sourcefiles, "o" );

	&LibraryTimestampPrefix( $lib, $libloc );
	&LibraryBuild( $lib, $libloc, $sourcefiles, "a", "o" );
	# Add any additional actions for this library.
	&SMInvokeAction( "OutputLib", $lib, $libloc );
        if ($ranliblib) {
	    # COMMAND PRINTING
	    &PrintVerboseOptionCommand( "\${RANLIB} ${libloc}lib$lib.a", "-",
					"  RANLIB          lib$lib.a" );
	}
	# To handle timestamp problems with recursive makes, add a delay
	&LibraryTimestampFix( $lib, $libloc )
    }
}

#
# Fix for problems with timestamps.  If the file is not local (not
# obviously in the current directory), then apply one of the fixes
#
# LibraryTimestampTarget - Save additional target name in altalltargets hash
#                          (used in ListTargets)
# LibraryTimestampPrefix - Additional target for the library
# LibraryTimestampFix - Fix *after* all other operations
# LibraryTimestampClean - Add clean commands for library timestamps
sub LibraryTimestampTarget {
    my ($fulllibname,$libstamp) = @_;
    my $expandedFullName = &ExpandMakeVars( $fulllibname );
    if ($expandedFullName =~ /^\.\./ && !$fixup_for_timestamps) {
	$altalltargets{$fulllibname} = $libstamp;
    }
}
sub LibraryTimestampPrefix {
    my ($lib, $libloc) = @_;

    my $expandedlibloc = &ExpandMakeVars( $libloc );

    if ($expandedlibloc =~ /^\.\./) {
	if (!$fixup_for_timestamps) {
	    my $num = "";
	    if (defined($libnum{$lib})) {
		$num = $libnum{$lib};
	    }
	    &print_make_line( FD, ".libstamp$num " );
	}
    }
}
sub LibraryTimestampFix {
    my ($lib,$libloc) = @_;
    my $expandedlibloc = &ExpandMakeVars( $libloc );
    if ($expandedlibloc =~ /^\.\./) {
	if ($fixup_for_timestamps) {
	    my $SleepText = $Sleep;
	    my $fulllibname = $libloc . "lib$lib.a";
	    $SleepText =~ s/LIB/$fulllibname/;
            print FD "\t$SleepText$newline"; 
        } else {
	    if (defined($libnum{$lib})) {
		my $num = "";
		$num = $libnum{$lib};
		print FD "\tdate > .libstamp$num\n";
	    }
	}
    }
}  

sub LibraryTimestampClean {
    if ($libcount > 0) {
	print FD "\t-${quietLine}rm -f ";
	for( my $i=0; $i<$libcount; $i++) {
	    print FD ".libstamp$i ";
	}
	print FD "\n";
    }
}

#
# This routine provides targets for object files that require special
# rules (such as the altcompiler)
sub BuildSpecialObjs
{
    my ($sourcefiles,$memext) = @_;
    # Handle the special case of different compiler required 
    # for compiling some files
    # EXPERIMENTAL
    if (%altCompileSources) {
	foreach $sourcefile (split(/\s+/,$sourcefiles)) {
	    if (defined($altCompileSources{$sourcefile})) {
		if ($sourcefile =~ /(.*)\.([^\.]*)/) {
		    $obj = "$1.$memext";
		    $ext = $2;
		}
		else {
		    # Don't warn about autoconf variables (see below)
		    if (! ($sourcefile =~ /^\@/) ) { 
			print STDERR "Sourcefile is $sourcefile\n";
		    }
		}
		my $altcompiler = $altCompileSources{$sourcefile};
		&print_make_line( FD, "$obj: \$(srcdir)/$sourcefile" );
		&print_make_endline( FD );
		&print_make_line( FD, "\t$altcompiler -c \$(srcdir)/$sourcefile" );
		&print_make_endline( FD );
	    }
	}
    }
}
# --------------------------------------------------------------------------

# This code is similar to TargetLibraries.
sub TargetProfileLibraries {
    $found_source_files = 0;
    foreach $lib (keys(%profile_libraries)) {
	$proflib_name = $profile_libraries{$lib};
	$libloc = &GetLibLoc( $lib );
	# Take the sources from the base library unless 
	# they were explicitly listed
	if (defined($profile_library_sources{$lib})) {
	    $sourcefiles = $profile_library_sources{$lib};
	}
	else {
            $sourcefiles = $libraries{$lib};
	}
	$sourcefiles = &ExpandMakeVars( $sourcefiles );
	# FIXME: Use LibraryBuild here
	# Use the library stamp
	my $libstamp = ".libstamp" . $libnum{$proflib_name};
	print FD "$libstamp: ";
	#&print_make_line( FD, "${libloc}lib$proflib_name.a: " );
        foreach $sourcefile (split(/\s+/,$sourcefiles)) {
	    $found_source_files = 1;
            $obj = $sourcefile;
            # Convert to object file
	    $ext = $sourcefile;
	    $ext =~ s/^.*\.//g;
	    if ($ext eq "f") { 
		# Ignore Fortran source files (setbotf.f in mpich2)
		next;
	    }
	    elsif (defined($extrules{"$ext:o"})) {
		$obj =~ s/\.$ext/\.o/g;
		$obj = "_" . $obj;
	    }
	    else {
		# Be silent on .h files
		if ($ext ne "h") {
		    print STDERR "Unknown extension $ext for $sourcefile for profile library $proflib_name\n";
		}
	    }
	    &print_make_line( FD, "$obj " );
        }
	&print_make_endline( FD );
	if ($found_source_files) {
	    # Add these files as objects to the archive
	    # COMMAND PRINTING
	    &PrintVerboseOptionCommand( "\${AR} cr ${libloc}lib$proflib_name.a \$?",
					"  AR" );
	    if ($ranliblib) { 
		# COMMAND PRINTING
		&PrintVerboseOptionCommand( "\${RANLIB} ${libloc}lib$proflib_name.a", 
					    "-", "  RANLIB          lib$proflib_name.a" );
	    }
	    # To handle timestamp problems with recursive makes, 
	    # add a delay
	    &LibraryTimestampFix( $proflib_name, $libloc );
	}

	if ($do_sharedlibs) {
	    my $libstamp = ".libstamp" . $libnum{$proflib_name.".la"};
	    print FD "$libstamp: ";
	    #&print_make_line( FD, "${libloc}lib$proflib_name.la: " );
	    foreach $sourcefile (split(/\s+/,$sourcefiles)) {
		$found_source_files = 1;
		$obj = $sourcefile;
		# Convert to object file
		$ext = $sourcefile;
		$ext =~ s/^.*\.//g;
		if ($ext eq "f") { 
		    # Ignore Fortran source files (setbotf.f in mpich2)
		    next;
		}
		elsif (defined($extrules{"$ext:o"})) {
		    $obj =~ s/\.$ext/\.lo/g;
		    $obj = "_" . $obj;
		}
		else {
		    # Be silent on .h files
		    if ($ext ne "h") {
			print STDERR "Unknown extension $ext for $sourcefile for profile library $proflib_name\n";
		    }
		}
		&print_make_line( FD, "$obj " );
	    }
	    &print_make_endline( FD );
	    if ($found_source_files) {
		# Add these files as objects to the archive
		# COMMAND PRINTING
		&PrintVerboseOptionCommand( "\${AR} cr ${libloc}lib$proflib_name.la \$?",
					    "  AR" );
		# To handle timestamp problems with recursive makes, 
		# add a delay
		&LibraryTimestampFix( $proflib_name.".la", $libloc );
	    }
	}
	
	# The new dependencies on the object files
        foreach $sourcefile (split(/\s+/,$sourcefiles)) {
	    $found_source_files = 1;
            $obj = $sourcefile;
            # Convert to object file
	    $ext = $sourcefile;
	    $ext =~ s/^.*\.//g;
	    if ($ext ne "c") {
		print STDERR "Unknown extension $ext for $sourcefile for profile library $proflib_name\n";
		next;
	    }
	    $obj =~ s/\.$ext/.o/;
	    $obj = "_" . $obj;
	    # Note that many makes won't replace $< in an implicit rule,
	    # so we explicitly list the source file
	    print FD "$obj: $sourcefile$newline";
	    # COMMAND PRINTING
	    &PrintVerboseOptionCommand( "\$(C_COMPILE) -c \@PROFILE_DEF_MPI\@ \$(srcdir)/$sourcefile -o $obj", "-", "  CC             -D<profiling> \${srcdir}/$sourcefile" );
	    if ($do_sharedlibs) {
		$obj =~ s/\.o/.lo/;
	        print FD "$obj: $sourcefile$newline";
	        &PrintVerboseOptionCommand( "\$(C_COMPILE_SHL) -c \@PROFILE_DEF_MPI\@ \$(srcdir)/$sourcefile -o $obj", "-", " CC           -D<profiling> \$(srcdir)/$sourcefile" );
	    }
        }
    } # foreach lib
}
#
# ===========================================================================
# The following is a cache of comments on using libtool, based on the
# targets created by automake.  
# Issues include 
#   Handling the simultaneous generation of dependency information
#    (automake assumes a GNU environment, including gnumake and gcc, unless
#    you work really, really hard)
#   
# .c.lo: (target in the automake is %.lo: %.c)  is roughly
# @echo '$(LTCOMPILE) -c $<'
# @$(LTCOMPILE) -Wp,-MD,.deps/$(*F).pp -c $<
# @sed -e 's/^\([^:]*\)\.o[\t ]*;/\1.lo \1.o :/' \ <.deps/$(*F).pp > \
#   .deps/$(*F).P; \
# tr ' ' '\012' < .deps/$(*F).pp \ 
#  | sed -e 's/^\\$$//' -e '/^$$/ d' -e '/:$$/ d' -e 's/$$/ :/' \
#  >> .deps/$(*F).P
# @rm -f .deps/$(*F).pp
#
# Most of this is used to handle the dependency generation, including
# makint the files refer to .lo and .o instead of just .o.  Also note that
# LTCOMPILE generates BOTH .o and .lo files.
# (most of this is similar to the .c.o target generated by automake
#
# Another important step is the install step, which is roughly
# install-libLTLIBRARIES: $(lib_LTLIBRARIES)
#   @$(NORMAL_INSTALL)
#   $(mkinstalldirs) $(DESTDIR)$(libdir)
#   @list='$(lib_LTLIBRARIES)'; for p in $$list ; do \
#     if test -f $$p; then \
#        echo "$(LIBTOOL) --mode=install $(INSTALL) $$p $(DESTDIR)$(libdir)/$$p" ;\
#        $(LIBTOOL) --mode=install $(INSTALL) $$p $(DESTDIR)$(libdir)/$$p ;\
#     else : ; fi ; done
# uninstall-libLTLIBRARIES:
#   @$(NORMAL_UNINSTALL)
#   @list='$(lib_LTLIBRARIES)'; for p in $$list ; do \
#        $(LIBTOOL) --mode=uninstall $(INSTALL) rm -f $(DESTDIR)$(libdir)/$$p ;\
#     done
#
# clean target for libtool adds .libs and _libs (may be directories)
# 
# NORMAL_INSTALL and UNINSTALL seem to be hooks; the base definition is :
# 
# DESTDIR is a newer automake thing to make it easier to retarget an install
# into a test directory.
#
# ---------------------------------------------------------------------------
# This routine creates the library of shared objects.  There is a separate
# step that builds the shared library (which is really a kind of partially
# linked executable).
# Pass in the name (by reference) of the list of libraries.  This allows
# us to use this routine for both the general list of libraries (for -shared, 
# which makes both static and dynamic libraries) and for the list of libraries
# that are only needed as shared libraries (e.g., Totalview and Java/SLOG
# interface libraries).
sub TargetSharedLibraries {
    # This provides a *reference* to the hash that is passed into the routine
    # See the perlsub and perlref manpages for this, and the %$libraries and
    # $$libraries used below.
    my $libraries = $_[0];

    foreach $lib (keys(%$libraries)) {
	# Skip the libraries that have no shared counterpart
	if (defined($libNotShared{$lib})) { 
	    #print "Skipping $lib\n"; 
	    next; 
	}
	$libloc = &GetLibLoc( $lib );
	$sourcefiles = &ExpandMakeVars($$libraries{$lib});
	#&BuildSpecialObjs( $sourcefiles, "lo" );

	&LibraryTimestampPrefix( $lib.".la", $libloc );
	&LibraryBuild( $lib, $libloc, $sourcefiles, "la", "lo" );
	# no ranlib step here because we can't "link" the shared library
	# until all members are added.
	&SMInvokeAction( "OutputShLib", $lib, $libloc );
	&LibraryTimestampFix( $lib.".la", $libloc )
    }
}

#
# This is the routine that creates a shared library from a library of
# shared objects.  
# This must be called from the directory containing the library.
# Still to do: provide a separate directory for the library, so 
# that a build library may be used instead
# 
# If we can't use .lo as an object extension, then after extracting,
# rename everything as .o and then build.
# TargetSharedLibraryFinal( "libmpich.la", "libmpich.so.1", dir )
#
# Note that we need to ensure that C_LINK_SHL is defined.  In turn,
# C_LINK_SHL may need CC, so we add that
#
# Another special feature: For some libraries, we may need an exports
# definition (by default, we'll export all symbols).  This is specified
# by defining the exports for a given library with a simplemake command:
# lib(name)_so_EXPORTS = filename

sub TargetSharedLibraryFinal {
    my $libname = $_[0];
    my $newlibname = $_[1];
    my $libdir = $_[2];

    my $libbasename = $libname;
    $libbasename =~ s/^lib//;
    $libbasename =~ s/\.la$//;

    #print "Checing $libbasename in Final\n";
    if (defined($libNotShared{$libbasename})) {
	#print "Skipping $libbasename in final\n";
	return;
    }

    if ($libdir eq "" || $newlibname eq "" || $libname eq "") {
	# If we don't have these names, we cannot create a valid library
	print STDOUT "Unable to create shared libary target (no directory\n\
library, or new library name)\n" if $debug;
	return;
    }
    if (!defined($ext_seen{"c"}) && $InitSharedLibraryFinal == 0) {
	# Remember that we made this definition
	$InitSharedLibraryFinal = 1;
	my $rule = $extdef{"c:o"}; 
	print FD "$rule\n";
    }

    # See if this library needs an exports list
    my $exports = "";
    if (defined($shared_libraries_exports{$libbasename})) {
	my $exportFile = $shared_libraries_exports{$libbasename};
	if ($libdir ne "." && !($exportFile =~ /^\//)) {
	    # make sure the exportFile refers to the correct location
	    $exportFile = "\$(abs_srcdir)/$exportFile";
	}
	$exports = "-export $exportFile";
    }
    my $otherlibs = "";
    if (defined($shared_libraries_libs{$libbasename})) {
	$otherlibs = $shared_libraries_libs{$libbasename};
    }
    if (!defined($usertargets{"$libdir/$newlibname"})) {
	print FD "# Build the shared library from the shared object files\n";
	print FD "$libdir/$newlibname: $libdir/$libname
\t(cd $libdir && \$(CREATESHLIB) --mode=link -version-info \"\@ABIVERSION\@\" -o $libname $exports -rpath \$(libdir) $otherlibs -ldflags \"\$(LDFLAGS)\" \$(LIBS))\n";
    }
    # If there is a profiling library, we need to build it
    # now, as part of this target, to handle the case where the
    # profiling library name might be the same as the regular name
    my $libbase = $libname;
    my $libext = ".so";
    if ($libbase =~ /lib(.*)(\..*)/) {
	$libbase = $1;
	$libext = $2;
    }
    if (defined($profile_libraries{$libbase})) {
	my $newbase = $profile_libraries{$libbase};
	$libname = "lib" . $newbase . $libext;
	if ($newlibname =~ /(.*lib)[^\/]*(\..*)/) {
	    $newlibname = $1 . $newbase . $2;
	}
	print FD "\tif [ -n \"\@NO_WEAK_SYM\@\" -a \\
\t\t\"$libbase\" != \"$newbase\" ] ; then \\\n";

	my $libbasename = $libname;
	$libbasename =~ s/^lib//;
	$libbasename =~ s/\.la$//;
	if (defined($shared_libraries_exports{$libbasename})) {
	    my $exportFile = $shared_libraries_exports{$libbasename};
	    if ($libdir ne "." && !($exportFile =~ /^\//)) {
		# make sure the exportFile refers to the correct location
		$exportFile = "\$(abs_srcdir)/$exportFile";
	    }
	    $exports = "-export $exportFile";
	}
	my $otherlibs = "";
	if (defined($shared_libraries_libs{$libbasename})) {
	    $otherlibs = $shared_libraries_libs{$libbasename};
	}

	print FD "\t(cd $libdir && \$(CREATESHLIB) --mode=link -version-info \"\@ABIVERSION\@\" -o $libname $exports -rpath \$(libdir) $otherlibs);\\\n";

	print FD "\tfi\n";
    }
}
#
# ===========================================================================
sub TargetPrograms {
    foreach $pgm (keys(%programs)) {
	# If there was a manual target, skip
	if (defined($usertargets{$pgm})) { 
	    print "Skipping generation of rule for $pgm because Makefile.sm already contains one\n";
	    next; 
	}
	&print_make_line( FD,  "$pgm: " );
	$pgmobjs = "";
	foreach $sourcefile (split(/\s+/,$programs{$pgm})) {
            $obj = $sourcefile;
            # Convert to object file
	    $ext = $sourcefile;
	    $ext =~ s/^.*\.//g;
	    if (defined($extrules{"$ext:o"})) {
		$obj =~ s/\.$ext/\.o/g;
		&print_make_line( FD, "$obj " );
		$pgmobjs .= "$obj ";
	    }
	    else {
		if ($ext ne "h") {
		    print STDERR "Unknown extension $ext for $sourcefile for program $pgm\n";
		}
	    }
        }
	# Add dependencies on libraries if requested
	$debug_lib_dependencies = 0;
	if ($convert_Ldir_to_relative) {
	    print STDERR "Checking for relative dirs\n" if $debug_lib_dependencies;
	    # convert -L dir -lname into dir/libname.a
	    $libdep = "";
	    if (defined($pgm_ldadd{$pgm})) { 
		$libdep = $pgm_ldadd{$pgm};
	    }
	    $libdep =~ s/-L\s*([\w\.\/]*)\s*-l([\w-]*)//;
	    $libdir = $1;
	    $libname = $2;
	    print STDERR "Checking $libdir and $libname\n" if $debug_lib_dependencies;
	    if (defined($libdir) && defined($libname) && 
		$libdir ne "" && $libname ne "" && 
		!defined($external_libraries{$libname})) { 
	        &print_make_line( FD, " $libdir/lib$libname.a" );
            }
	}
	$otherdep = "";
	if (defined($pgm_depadd{$pgm})) {
	    $otherdep = $pgm_depadd{$pgm};
	}
	if (defined($otherdep)) {
	    &print_make_line( FD, " $otherdep" );
	}
	if (defined($depadd_all)) {
	    &print_make_line( FD, " $depadd_all" );
	}

	# Use the link rule appropriate for this program type
	#$pgmtype = $pgmsrctype{$pgm};
	&print_make_endline( FD );
	&print_make_setpos( 8 );
	$ruleline = "\t$progrules{$pgmsrctype{$pgm}} -o $pgm $pgmobjs";
	# We really need an libs before LIBS and libs after libs.
	if (defined($pgmlibs{$pgm})) {
	    $ruleline .= " $pgmlibs{$pgm}";
	}
	if (defined($pgm_ldadd{$pgm})) {
	    $ruleline .= " $pgm_ldadd{$pgm}";
	}
	$ruleline .= " \${LIBS}";
	&print_make_longline( FD, $ruleline );
    }

}

#
# ===========================================================================
sub TargetTags {
    if (!$local_tags && !$root_tags) { return; }

    my $headerFiles = "";
    my $foundDerivedHeader = 0;
    my $sourceFiles = "";
    my $foundDerivedSource = 0;
    my $inputSources = "";

    # Generate a listing of header and source files
    $has_sources = 0;
    $has_headers = 0;
    if ($regular_sources =~ /\S/) {
	printMakeVariable( FD, "SOURCES", $regular_sources );
	$inputSources = $regular_sources;
	$has_sources = 1;
    }
    elsif (defined($makevars{'SOURCES'})) {
	if ($makevars{'SOURCES'} =~ /\S/) {
	    $has_sources = 1;
	    $inputSources = $makevars{'SOURCES'};
	}
    }
    if ($has_sources) {
	foreach my $file (split(/\s+/,$inputSources)) {
	    if (! ($file =~ /\S/)) { next; }
	    # Check that these files exist, either directly or 
	    # as a '.in' version
	    if (-s "$file.in") {
		$sourceFiles .= "\$(abs_builddir)/$file ";
		$foundDerivedSource = 1;
	    }
	    elsif (-s "$file") {
		$sourceFiles .= "$file ";
	    }
	    else {
		# Only complain about C files for now
		if ($file =~ /.*\.c$/) {
		    print STDERR "Warning: source file $file or $file.in not found in $curdir\n";
		}
	    }
	}
    }

    if ($regular_headers ne "") {
	printMakeVariable( FD, "HEADERS", $regular_headers );
	$has_headers = 1;
    }
    if (defined($makevars{'HEADERS'})) {
	$has_headers = 1;
	# Add these files to the headers variable.
	# headers is used to check on files that aren't handled by
	# simplemake
	foreach my $file (split(/\s+/,$makevars{'HEADERS'})) {
	    if (! ($file =~ /\S/)) { next; }
	    $headers{$file} = 1;
	    # Check that these files exist, either directly or 
	    # as a '.in' version
	    if (-s "$file.in") {
		$headerFiles .= "\$(abs_builddir)/$file ";
		$foundDerivedHeader = 1;
	    }
	    elsif (-s "$file") {
		$headerFiles .= "$file ";
	    }
	    else {
		print STDERR "Warning: header file $file or $file.in not found in $curdir\n";
	    }
	}
    }

    # Add a synonym for tags.
    if ($foundDerivedHeader) {
	printMakeVariable( FD, "HEADERFILES", $headerFiles );
    }
    else {
	printMakeVariable( FD, "HEADERFILES", '$(HEADERS)' );
    }
    if ($foundDerivedSource) {
	printMakeVariable( FD, "SOURCEFILES", $sourceFiles );
    }
    else {
	printMakeVariable( FD, "SOURCEFILES", '$(SOURCES)' );
    }
}
#
# The generation of documentation (e.g., manual pages) is handled 
# a little differently.  To make it easier to manage a VPATH build of
# everything, including the documentation, we:
#    Add the document output types as file extensions to SUFFIX
#    Add generic build rules (using variables for options) 
#    Create targets using variable substitution.
# For example, to add html output (this shows *only* the document rules)
#
# .SUFFIXES: .c .html 
# .c.html:
# \tdoctext -html $(DOCTEXT_OPTIONS) $<
# HTML: ${mpi_sources:.c=.html}
#
# In addition, we may need to generate a document target even if there are
# no files in this directory *if* there are subdirectories (the usual
# recursive target).
#
# Temporary repository:
# the doctext line from MPICH1
#	$doctext -ext 3 -mpath ../../man/man3 -I pubinc -heading MPI \
#		 -quotefmt /home/MPI/mansrc/fortnotes \
#		 -ignore EXPORT_MPI_API \
#	         /home/MPI/mansrc/errnotes *.c ; \
#
# SuffixDocs: Add any suffix rules for this directory
sub SuffixDocs { 
    # global: do_docs, suffixes, docsrc
    if (! $do_docs) { return; }
    foreach my $kind (keys(%docsrc)) {
	if ($docsrc{$kind} ne "") {
	    $suffixes .= " .$kind";
	}
    }
    # Add source file suffixes
    if (! $suffixes || ! ($suffixes =~ /\.txt/) ) {
	$suffixes .= " .txt";
    }
}
sub VariableDocs {
    # global: do_docs, suffixes, docsrc
    if (! $do_docs) { return; }
    foreach my $kind (keys(%docsrc)) {
	;
    }
    # Let us set doctext from configure.  We only need this if
    # we saw any sources.  This expresion is true if docsrc is non-empty
    if (scalar(%docsrc)) {
	printMakeVariable( FD, "DOCTEXT", "\@DOCTEXT\@" );
    }
}

#
# Generate the rule for generating documentation from the source files
# 
sub RuleDocs {
    # global: do_docs, docsrc, FD, newline
    if (! $do_docs) { return; }
    $rootdir = $rootdirpath;
    foreach my $kind (keys(%docsrc)) {
	# Set the default suffix
	$docsrcsuffix = ".c";
	if (defined($docsrc{$kind}) && $docsrc{$kind} ne "") {
	    $docdestdir = $globaldocdir;
	    if (defined($docdir{$kind}) && $docdir{$kind} ne "") {
		$docdestdir = $docdir{$kind};
	    }
	    # Replace ROOTDIR, including handling any doubled //
	    $docdestdir =~ s/ROOTDIR/$rootdir/g;
	    $docdestdir =~ s/\/\//\//g;
	    # Replace any occurance of $dockinddirval is docdestdir
	    if (defined($docthiskinddir{$kind})) {
		$dockinddirval = $docthiskinddir{$kind};
	    }
	    else {
		$dockinddirval = $dockinddir{$kind};
	    }
	    $docdestdir =~ s/(\$\w+)/$1/eeg;     # see man perlfaq4
	    #
	    # Replace ROOTDIR etc in any doc_namedefs
	    $docargs = $doc_namedefs;
	    if ($docargsAdd ne "") {
		$docargs .= " $docargsAdd";
	    }
	    $docargs =~ s/ROOTDIR/$rootdir/g;
	    $docargs =~ s/\/\//\//g;
	    
	    # Check for an alternative suffix
	    $docfiles = &ExpandMakeVars( $docsrc{$kind} );
	    print "file list = $docfiles\n" if $debug;
	    for $file (split(/\s+/,$docfiles)) {
		$file =~ /.*(\..*)$/;
		$suffix = $1;
		if ($docsrcsuffix ne $suffix) {
		    $docsrcsuffix = $suffix;
		}
	    }
	    print FD "$docsrcsuffix.$kind:$newline";
	    $extarg = "";
	    if ($kind eq "man" && ($docdestdir =~ /man(\d)$/)) {
		$extarg = "-ext $1";
	    }
	    print FD "\t\$(DOCTEXT) $doctextOptionName{$kind} -mpath $docdestdir $extarg -heading $doc_heading \\$newline";
	    print FD "\t\t-quotefmt $docargs \$<$newline";
	}
    }
}

#
# Given a list of sources, return an array containing the distinct suffixes
# (without the leading .)
sub GetSuffixList {
    my %suffixSeen = ();
    my $vars = $_[0];
    my @suffixes = ();

    # Check for an alternative suffix
    $vars = &ExpandMakeVars( $vars );
    print "file list = $vars\n" if $debug;
    for $file (split(/\s+/,$vars)) {
	$file =~ /.*\.(.*)$/;
	$suffix = $1;
	if (!defined($suffixSeen{$suffix})) {
	    $suffixSeen{$suffix} = 1;
	    $suffixes[$#suffixes+1] = $suffix
	}
    }
    return @suffixes;
}

sub SubForSuffixes {
    my $src = $_[0];
    my $suffixarrayName = $_[1];
    my $repSuffix = $_[2];
 
    for $suffix (@$suffixarrayName) {
	$src =~ s/\.$suffix/\.$kind/;
    }
    return $src;
}

#
# Generate the documentation targets.
#
sub TargetDocs {
    if (! $do_docs || ! $maint_targets) { return; }
    my %didkind = ( "html" => 0, "man" => 0, "latex" => 0 );

    print FD $makeBlockSep;
    foreach my $kind (keys(%docsrc)) {
	$targetKind = $docTargetName{$kind};
	print FD "$targetKind: ";
	my $src = $docsrc{$kind};
	if ($src ne "") {
	    if ($src =~ /^\s*\$[\{\(][_\w]*[\}\)]\s*$/) {
		# a single variable: use make substitution if a single
		# suffix
		@suffixes = &GetSuffixList( $src );
		if ($#suffixes == 0) {
		    $src =~ s/\}/:.$suffixes[0]=.$kind\}/;
		}
		else {
		    # manually substitute
		    $src = &SubForSuffixes( $src, "suffixes", $kind );
		}
	    }
	    elsif ($src =~ /\$/) {
		# Perform variable expansion if possible
		$src = &ExpandMakeVars( $src );
		@suffixes = &GetSuffixList( $src );
		# Convert the extensions to the document type
		#$src =~ s/\.c/.$kind/;
		$src = &SubForSuffixes( $src, "suffixes", $kind );
	    }
	    else {
		$src =~ s/\.c/.$kind/;
	    }
	    print FD "$src$newline";
	}
	else {
	    # This is the recursive branch
	    print FD "$newline";
	}
	# If we're at the top; create any directories that are needed
	# This assumes a particular layout for the directories that
	# we'll eventually want to make adjustable.
	if ($doc_attop) {
	    my @dirs = ();
	    if ($kind eq "html") {
		@dirs = ( "www", "www/www1", "www/www3" );
	    }
	    elsif ($kind eq "man") {
		@dirs = ( "man", "man/man1", "man/man3" );
	    }
	    elsif ($kind eq "latex") {
		@dirs = ( "doc", "doc/refman" );
	    }
	    else {
		print STDERR "Unrecognized document type $kind\n";
	    }
	    foreach my $dir (@dirs) { 
		print FD "\tif [ ! -d \${DESTDIR}$dir ] ; then mkdir \${DESTDIR}$dir ; fi$newline";
	    }
	}
	&RecursiveOp( $targetKind );
	if ($#doc_subdirs >= 0) {
	    &RecursiveOp( $targetKind, "doc_subdirs" );
	}
	if (defined($usertargets{"${targetKind}-local"})) {
	    print FD "\t\${MAKE} ${targetKind}-local$newline";
	}
	$didkind{$kind} = 1;
    }
    # 
    # For any directory that does not have any source files, we must still
    # generate a target *if* any directory set the source.
    foreach $kind ("html", "man", "latex") { 
	$targetKind = $docTargetName{$kind};
	if (! $didkind{$kind} && $globaldockind{$kind}) {
	    print FD "$targetKind:$newline";
	    &RecursiveOp( $targetKind );
	    if ($#doc_subdirs >= 0) {
		&RecursiveOp( $targetKind, "doc_subdirs" );
	    }
	}
    }
    print FD $makeBlockSep;
}

#
# Install target.  Question: does this need to list (or use a shell command
# to get) the filename for each individual file?
#
sub InstallDocs {
    # Add target only at the top
    if (!$doc_attop) { return; }

    # Instead of this approach, we used a more general installdir
    # that handles these cases.
#     print FD "install-docs:$newline";
#     # Each document type is different.  In addition, we want the install
#     # to work even if the documents have not been built.
#     if ((!$didkind{"html"}) && $globaldockind{"html"}) {
#         print FD "\tif [ ! -d \$(htmldir) ] ; then \$(MKDIR_P) \$(htmldir) ; fi\n";
# 	print FD "\tif [ -d www/www3 ] ; then \\$newline";
# 	print FD "\t\$(INSTALL_DATA) www/www3/* \$(htmldir)/www3/ ; fi$newline";
# 	print FD "\tif [ -d www/www1 ] ; then \\$newline";
# 	print FD "\t\$(INSTALL_DATA) www/www1/* \$(htmldir)/www1/ ; fi$newline";
#     }
#     if ((!$didkind{"man"}) && $globaldockind{"man"}) {
#         print FD "\tif [ ! -d \$(mandir) ] ; then \$(MKDIR_P) \$(mandir) ; fi\n";
# 	print FD "\tif [ -d man/man3 ] ; then \\$newline";
# 	print FD "\t\$(INSTALL_DATA) man/man3/* \$(mandir)/man3/ ; fi $newline";
# 	print FD "\tif [ -d man/man1 ] ; then \\$newline";
# 	print FD "\t\$(INSTALL_DATA) man/man1/* \$(mandir)/man1/ ; fi $newline";
#     }
    # LaTeX manual is different and requires a special case
}

# Add any dirs that are referred to by InstallDocs
sub InstallDocDirs {
    # Add target only at the top
    if (!$doc_attop) { return; }

    print FD "htmldir         = \@htmldir\@\nmandir          = \@mandir\@\n";
}

#
# Installation is complicated by VPATH builds; files that are derived and
# files that are not may be in different locations (one relative, the other
# absolute with respect to the source tree)
#
# Also, note that the documents and some other files may be pre-existing, so 
# that we need to get them from the srcdir, not the build dir.  However,
# maintainers may create them in the builddir.
sub TargetInstall {
    %dirschecked = ();
    if (!scalar(%install_files) && !scalar($install_dirs) &&
	!scalar(%optinstall_files) && !scalar($optinstall_dirs)) { 
	if (defined($usertargets{"install-local"}) && !$gIssuedInstallLocal) {
	    # First add the indirect to the install-local target (when
	    # there are no local files to install at all)
	    print FD "install: install-local $newline";
	}
	return; 
    }
    print FD "# Install target$newline";
    &TargetInit( "install" );
    print FD " FORCE_TARGET $newline";
    # Create the directories for the install directories
    foreach $kind (keys(%install_dirs)) {
	$dir = $InstallDirFromKind{$kind};
	if ($dir eq "") {
	    print STDERR "No known installation dir for install_$kind\n";
	    next;
	}
	if (!defined($dirschecked{$dir})) {
	    # Check on dependent directories
	    foreach $checkdir (split(/\s+/,$required_dirs{$dir})) {
		if ($checkdir ne "" && !defined($dirschecked{$checkdir})) {
		    $dirschecked{$checkdir} = 1;
		    print FD "\tif [ ! -d \${DESTDIR}\${$checkdir} ] ; then \$(MKDIR_P) \${DESTDIR}\${$checkdir} ; fi$newline";
		}
	    }
	    print FD "\tif [ ! -d \${DESTDIR}\${$dir} ] ; then \$(MKDIR_P) \${DESTDIR}\${$dir} ; fi$newline";
	    $dirschecked{$dir} = 1;
	}
    }

    # Handle the files
    foreach $kind (keys(%install_files)) {
	$dir = $InstallDirFromKind{$kind};
	if ($dir eq "") {
	    print STDERR "No known installation dir for install_$kind\n";
	    next;
	}
	if (!defined($dirschecked{$dir})) {
	    # Check on dependent directories
	    foreach $checkdir (split(/\s+/,$required_dirs{$dir})) {
		if ($checkdir ne "" && !defined($dirschecked{$checkdir})) {
		    $dirschecked{$checkdir} = 1;
		    print FD "\tif [ ! -d \${DESTDIR}\${$checkdir} ] ; then \$(MKDIR_P) \${DESTDIR}\${$checkdir} ; fi$newline";
		}
	    }
	    print FD "\tif [ ! -d \${DESTDIR}\${$dir} ] ; then \$(MKDIR_P) \${DESTDIR}\${$dir} ; fi$newline";
	    $dirschecked{$dir} = 1;
	}
	#
	# If there is an install-local target, invoke it here:
	if (defined($usertargets{"install-local"}) && !$gIssuedInstallLocal) {
	    if ($install_local_dirs ne "") {
		foreach my $dir (split(/\s+/,$install_local_dirs)) {
		    foreach $checkdir (split(/\s+/,$required_dirs{$dir})) {
			if ($checkdir ne "" && !defined($dirschecked{$checkdir})) {
			    $dirschecked{$checkdir} = 1;
			    print FD "\tif [ ! -d \${DESTDIR}\${$checkdir} ] ; then \$(MKDIR_P) \${DESTDIR}\${$checkdir} ; fi$newline";
			}
		    }
		    if ($dir ne "" && !defined($dirschecked{$dir})) {
			$dirschecked{$dir} = 1;
			print FD "\tif [ ! -d \${DESTDIR}\${$dir} ] ; then \$(MKDIR_P) \${DESTDIR}\${$dir} ; fi$newline";
		    }
		}
	    }
	    print FD "\t\${MAKE} install-local$newline";
	    $gIssuedInstallLocal = 1;
	}

	foreach $file (split(/\s+/,$install_files{$kind})) {
	    $destfile = $file;
	    $destfile =~ s/.*\///;
	    $this_install_method = $install_methods{$kind};
	    if ($this_install_method eq "") {
		$this_install_method = '$(INSTALL)';
		}
	    print FD "\t$this_install_method $file \${DESTDIR}\${$dir}/$destfile$newline";
	}
    }

    # Install any directories.  This asks for all files in the directory
    # to be installed.  It is typically used for things like manpages
    # that may be very numerous
    foreach $kind (keys(%install_dirs),keys(%optinstall_dirs)) {
	$dir = $InstallDirFromKind{$kind};
	foreach $srcdir (split(/\s+/,$install_dirs{$kind})) {
	    # Choose the installation method based on the kind value
	    if (!defined($install_methods{$kind})) {
		$this_install_choice = '$(INSTALL_PROGRAM)';
	    }
	    else {
		$this_install_choice = $install_methods{$kind};
	    }

	    # This handles 2-level directories, such as man pages and 
	    # html pages (organized as man/man1-8 or www/www1-8).  A fully
	    # recursive approach could be used, but it is felt that an 
	    # install should be constrained.  If there is a reason for an 
	    # install with three levels of directories, either install the 
	    # subdirectories separately or modify this code.

	    # Sigh.  This causes some make programs (such as gnumake)
	    # to print a message about an ignored error.  To avoid that,
	    # we turn the @-test into an @if test
	    #print FD "\t\@-test -d $srcdir && cd $srcdir && for name in * ; do \\
	    print FD "\t\@if test -d $srcdir && cd $srcdir ; then \\
\t for name in * ; do \\
\t  if [ \"\$\$name\" = \"*\" ] ; then continue ; fi ; \\
\t  if [ -f \$\$name ] ; then \\
\t    echo \"$this_install_choice \$\$name \${DESTDIR}\${$dir}/\$\$name\" ; \\
\t    $this_install_choice \$\$name \${DESTDIR}\${$dir}/\$\$name ; \\
\t  elif [ -d \$\$name ] ; then \\
\t    if [ ! -d \${DESTDIR}\${$dir}/\$\$name ] ; then \$(MKDIR_P) \${DESTDIR}\${$dir}/\$\$name ; fi ;\\
\t    ( cd \$\$name && for name2 in * ; do \\
\t        if [ \"\$\$name2\" = \"*\" ] ; then continue ; fi ; \\
\t        if [ -f \$\$name2 ] ; then \\
\t            echo \"$this_install_choice \$\$name2 \${DESTDIR}\${$dir}/\$\$name/\$\$name2\" ; \\
\t            $this_install_choice \$\$name2 \${DESTDIR}\${$dir}/\$\$name/\$\$name2 ; \\
\t        elif [ -d \$\$name2 ] ; then  \\
\t            echo \"cp -rp \$\$name2 \${DESTDIR}\${$dir}/\$\$name\" ; \\
\t            cp -rp \$\$name2 \${DESTDIR}\${$dir}/\$\$name ; \\
\t        fi \\
\t    done ) ; \\
\t  else \\
\t    echo \"Unknown file type for \$\$name\" ; \\
\t  fi ; \\
\t done ; \\
\tfi$newline";
	}
    }

    foreach $kind (keys(%optinstall_files)) {
	$dir = $InstallDirFromKind{$kind};
	if (!defined($dirschecked{$dir})) {
	    print FD "\tif [ ! -d \${DESTDIR}\${$dir} ] ; then \$(MKDIR_P) \${DESTDIR}\${$dir} ; fi$newline";
	    $dirschecked{$dir} = 1;
	}
	foreach $filelist ($optinstall_files{$kind}) {
	    foreach $file (split( /\s+/, $filelist)) {
		$destfile = $file;
		$destfile =~ s/.*\///;
		# Choose the installation method based on the kind value
		if (!defined($install_methods{$kind})) {
		    $this_install_choice = '$(INSTALL_PROGRAM)';
		}
		else {
		    $this_install_choice = $install_methods{$kind};
		}
		print FD "\tif [ -s $file ] ; then $this_install_choice $file \${DESTDIR}\${$dir}/$destfile ; fi$newline";
	    }
	}
    }
    foreach $extradir (@install_subdirs) {
	# Check for configure substitutions in the list.  Make
	# these conditional, so that they can be empty.  Also note that
	# they could also contain *multiple* directories, so we have
	# to handle them in a general way
	#$endline = "";
	if ($extradir =~ /^@/) {
	    print FD "\tfor dir in $extradir - ; do \\$newline";
	    print FD "\t\tif [ \"\$\$dir\" = \"-\" ] ; then break ; fi ;\\$newline";
	    print FD "\t\t(cd \$\$dir && \$(MAKE) INSTALL_STRIP_FLAG=\$(INSTALL_STRIP_FLAG) PACKAGE=\$(PACKAGE) install) ;\\$newline";
	    print FD "\tdone$newline";
	}
	else {
	    print FD "\t(cd $extradir && \$(MAKE) INSTALL_STRIP_FLAG=\$(INSTALL_STRIP_FLAG) install)$newline";
	}
    }
    &TargetPostamble( "install" );
    print FD "$newline";

    # Install documentation
    &InstallDocs;
    #
    print FD "install-strip:$newline";
    print FD "\t\$(MAKE) INSTALL_STRIP_FLAG=-s install$newline";
    
    #
    # We should also create an uninstall target.  Rather than 
    # unilaterally uninstalling files, we may want an option to create
    # a file that will uninstall only the installed files (as MPICH-1
    # does).
    &TargetInit( "uninstall" );
    print FD "\n";
    foreach $kind (keys(%install_files)) {
	$dir = $InstallDirFromKind{$kind};
	foreach $file (split(/\s+/,$install_files{$kind})) {
	    $destfile = $file;
	    $destfile =~ s/.*\///;
            if (defined($uninstall_methods{$kind})) {
                # This branch is subtly different from the else branch below 
		# because it also passes the $file as the first argument.  
		# Strictly speaking, this is not compatible with using
                # libtool directly, so if we ever replace createshlib then 
		# we should rework this uninstall target 
		# just a bit. [goodell@mcs 2007-11-28]
                print FD "\t-$uninstall_methods{$kind} $file \${DESTDIR}\${$dir}/$destfile$newline";
            }
            else {
                print FD "\t-rm -f \${DESTDIR}\${$dir}/$destfile$newline";
            }
	}
    }
    foreach $kind (keys(%optinstall_files)) {
	$dir = $InstallDirFromKind{$kind};
	foreach $file (split(/\s+/,$optinstall_files{$kind})) {
	    $destfile = $file;
	    $destfile =~ s/.*\///;
            if (defined($uninstall_methods{$kind})) {
                # This branch is subtly different from the else branch below 
		# because it also passes the $file as the first argument.  
		# Strictly speaking, this is not compatible with using
                # libtool directly, so if we ever replace createshlib then 
		# we should rework this uninstall target just a 
		# bit. [goodell@mcs 2007-11-28]
                print FD "\t-$uninstall_methods{$kind} $file \${DESTDIR}\${$dir}/$destfile$newline";
            }
            else {
                print FD "\t-rm -f \${DESTDIR}\${$dir}/$destfile$newline";
            }
	}
    }
    # Handle uninstalls controlled by subdirs
    if ($#install_subdirs >= 0) {
	&RecursiveOp( "uninstall", "install_subdirs" );
    }
    &TargetPostamble( "uninstall" );

    # also add the recursive installcheck target
    &TargetInit( "installcheck" );
    if (defined($usertargets{"installcheck-local"})) {
	print FD " installcheck-local"; 
    }
    print FD $newline;
    if ($#install_subdirs >= 0) {
	&RecursiveOp( "installcheck", "install_subdirs" );
    }
    &TargetPostamble( "installcheck" );
}
#
# ===========================================================================
# Other targets and stuff to be added:
#   CPP
#   Including common headers (e.g., all file.sm's get a common header of
#       variables defined by configure.  This is cleaner than the automake 
#       approach of including *every* AC_SUBST value).
#   Support for shared libraries.  Unlike automake, we will not require
#       separate rules (automake uses lib_LTLIBRARIES and la extensions)
#       for shared library support.
#   Handling files to be installed (e.g., automake's sbin_PROGRAMS = ...)
#      (automake understands <dir>_PROGRAMS and <dir>_LIBRARIES)
#   target_LDFLAGS and general LDFLAGS
#   INCLUDES (automake variable that we've adopted) needs better control.
#   Support for .F and .F90 extensions (Fortran with preprocessor)
#   FLIBS
#   Linker choice.  simplemake uses the file type of the *first* source file.
#       automake has a matrix that depends on the source files referred to.
#   SCRIPTS (as in bin_SCRIPTS) targets
#   HEADERS variables (as in prog_HEADERS).  In many cases, this should
#       be determined automatically.  Note that it is needed for correct TAGS
#       generation.

# Miscellaneous Routines
sub printHelp {
    print STDERR "\
simplemake [ -nocomments ] [ -am ] [ -libdir=NAME=DIR ] [ -include=LIST ]\
           files \
    -nocomments      - Exclude Makefile comments from generated file\
    -libdir=NAME=DIR - library NAME is located in directory DIR\
    -am              - Automake style target names\
    -include=LIST    - CPP style list of include directories (e.g., -Ia -Ib)\
                       These define INCLUDES unless a Makefile.sm defines\
                       that value\
    -v               - verbose output\
    -common=file     - Read text to include in every output file\
    -distrib         - Turn off all maintenance targets (make a distribution\
                       version)\
    -vpath=[yes|no]  - Create VPATH targets\
\
    -depend          - Generate dependency information as a make target\
    -depend=static   - Generate dependency information when simplemake runs\
    -nodepend        - Do not generate dependency information\
\
    -rootdir=PATH    - Set the root directory for all Makefiles\
    -configdir=PATH  - Location of the configure that controls the Makefile\
                       in this directory (used to rebuild a single \
                       Makefile.in)\
    -debug           - Turn on debugging output\
    -dos             - Use DOS-style newlines on output files\
    -interdirsleep   - Use a sleep between directory builds to handle problems\
                       with file systems that are not time-synchronized\
                       with the build node.  -interdirsleep=nn specifies\
                       an nn second sleep.\
    -smroot=dir      - Location of simplemake (absolute location)\
    -help            - This output\
    \n";
    print STDERR "\
    Recognized target forms\
    libname_a_SOURCES = source files for library \"name\"\
    libname_a_DIR     = location of directory into which lib \"name\" goes\
    SUBDIRS = blank separated list of subdirectories to process.  Use \".\"\
              to control the order in which the current directory is processed\
    DOC_SUBDIRS = blank separate list of subdirectories containing \
              documentation but no code source.  These directories may\
              contain files used as input to documentation generators.\
    EXTRA_PROGRAMS = names of programs to define rules for but not to build\
                     by default\
    EXTRA_LIBS = names of libraries to define rules for but not to build\
                     by default\
    name_SOURCES = source files for program \"name\"\
    name_LDADD   = extra linker flags for building program \"name\"\
\
    LDADD = extra linker flags to add to all programs\
    simplemake also allows all usual Makefile commands, including variable\
    assignment and targets.\n";
}

#
# Generate dependency information when possible.  This version simply 
# uses gcc -MM; if that doesn't work, does nothing.  
#
# Automake strives to generate the dependencies.  This is a better approach,
# but it is very difficult to implement in practice, particularly where the
# development environment is not GNU.  
#
# This is somewhat tricky because the current organization of MPICH2
# makes use of many -I<dir> switches, that are selected at configure time,
# so some files may not be where expected.
sub AddDependency {
    $target = $_[0];
    if (defined($makevars{"INCLUDES"})) {
	$include = $makevars{"INCLUDES"};
    }
    else {
	$include = $include_list;
    }
    print "Trying $make_depend $include $target\n" if $debug;
    $cmdline = "$make_depend $include $target";
    if (! $debug) {
	$cmdline .= " 2>/dev/null";
    }
    $cmdline .= " |";
    print "Depend commandline = $cmdline\n" if $debug;
    open( DEPFD, $cmdline ) || return;
    while (<DEPFD>) {
	# Remove files that are provided by the device
	s/\S*mpidpre\.h//g;
	s/\S*mpidpost\.h//g;

	# For derived object files like lo and _xxx.o, add these
	if ($do_profilelibs && $found_profilelib) {
	    s/^(.*)\.o:(.*)/$1.o _$1.o:$2/;
	}
	if ($do_sharedlibs || $found_sharedlib) {
	    s/^(.*)\.o(.*)/$1.o $1.lo$2/;
	}
	print FD $_ ;
    }
    close( DEPFD );
}

#
# 
sub TargetDependenciesStatic {
    print FD "# Dependencies$newline";
    # Libraries first
    foreach $lib (keys(%libraries)) {
        foreach $sourcefile (split(/\s+/,&ExpandMakeVars($libraries{$lib}))) {
            # Get extension
	    $ext = $sourcefile;
	    $ext =~ s/^.*\.//g;
	    # We only know about C for now.
	    if ($ext eq "c") {
		&AddDependency( $sourcefile );
	    }
        }
    }
    # Programs
    foreach $pgm (keys(%programs)) {
	foreach $sourcefile (split(/\s+/,$programs{$pgm})) {
	    $ext = $sourcefile;
	    $ext =~ s/^.*\.//g;
	    # We only know about C for now.
	    if ($ext eq "c") {
		&AddDependency( $sourcefile );
	    }
	}
    }
}

#
# Design:
# Each source file has an associated file containing dependencies, stored in 
# a subdirectory .deps
#    Each source file foo has .deps/foo.d
#    The Makefile includes .deps/alldeps
#
# Because we want to support VPATH builds, we can't create these in the
# real source directory, so these directories and files must be created
# at configure time.
#
sub TargetDependenciesDynamic {
    my $has_sources = 0;

    # First, are there any sources?
    # a hash in a scalar context is 0 if empty and nonzero otherwise
    if (scalar(%libraries) || scalar(%programs)) {
	$has_sources = 1;
    }
    
    
    # Some makes will accept sinclude instead of -include
    # -include is gnumake for "include if file exists, ignore otherwise"
    if ($makeInclude eq "") { $makeInclude = "-include"; }

    print FD $makeBlockSep;
    print FD "# Dependencies$newline";
    # This definition follows the one for COMPILE_C
    if ($has_sources) {
	# By setting DEPS_DIR to just ., you can use -MMD to update the
	# dependencies with gcc
	print FD "DEPS_DIR = .deps$newline";
	# We'd like to use $found_profilelib to decide whether
	# to include the _$*.o in the target string.  
	# But make wants to do the $* substitutions before variable
	# substitutions
	printMakeVariable( FD, "MAKE_DEPEND_C", 
             "\@MAKE_DEPEND_C\@ \$(DEFS) \$(INCLUDES) \$(CPPFLAGS)$newline" );
	print FD "dependencies: \$(DEPS_DIR)/timestamp$newline";
    }
    else {
	print FD "dependencies:$newline";
    }
    # We want to process other_dirs but not notsimplemake_subdirs
    # in this application of recursiveop
    $otherDirs = "";
    if (defined($smmakevars{'OTHER_DIRS'})) { 
	$otherDirs = $smmakevars{'OTHER_DIRS'};
    }
    $notDirs = "";
    if (%notSimplemakeDirs) {
	foreach my $key (keys(%notSimplemakeDirs)) {
	    $notDirs .= "$key ";
	}
    }
    &RecursiveOp( "dependencies", "", "", $otherDirs, $notDirs );

    # First, generate the targets to maintain the individual files.
    # This makes it easy to update the dependency contents without
    # regenerating the entire list.
    # Note that we don't always want to use this target, since
    # the dependencies may need to be regenerated when other files change.
    # Even better is to use this to update the dependency files 
    # when each file is compile (gcc can almost do this, as long as
    # you don't mind having .d files in the build directory)
    if ($has_sources) {
	# Use $found_profilelib to decide whether to add _xxx.o to the
	# target name.  This requires that the MAKE_DEPEND_C compiler
	# accept the -MT option
	#
	my %sawFile = ();
	foreach $lib (keys(%libraries)) {
	    # Its possible that the same file is used in several libraries.
	    # Thus, we only look at unique files.
	    foreach $sourcefile (split(/\s+/,&ExpandMakeVars($libraries{$lib}))) {
		if (defined($sawFile{$sourcefile})) { next; }
		$sawFile{$sourcefile} = 1;
		# FIXME: If, for some reason, the source file is created by
		# configure, then simplemake will get confused.
		my $srcdirloc = '$(srcdir)/';
		$ext = $sourcefile;
		$ext =~ s/^.*\.//g;
		$sourcebasename = $sourcefile;
		$sourcebasename =~ s/\.\w*$//;
		$objfiles = "_$sourcebasename.o $sourcebasename.o";
		if ($do_sharedlibs || $found_sharedlib) {
		    $objfiles .= " $sourcebasename.lo _$sourcebasename.lo";
		}
		my $targetOpts = "-MT \'$objfiles\'";
		if (!$found_profilelib) {
		    $targetOpts = "";
		}
		# We can not use $< in an explicit target context because
		# some Make programs do not handle them properly (Solaris,
		# for one)
		if ($ext eq "c") {
		    if (! -s $sourcefile) {
			my $missingFile = "$curdir/$sourcefile";
			$missingFile =~ s%//%/%g;
			print STDERR "Sourcefile $missingFile does not exist.\
simplemake is assuming that this file will be created by the configure step\
in the build directory\n";
			$srcdirloc = '';
		    }
		    print FD "\$(DEPS_DIR)/$sourcebasename.d: $srcdirloc$sourcefile$newline";
		    &PrintVerboseOptionCommand( "\$(MAKE_DEPEND_C) $targetOpts $srcdirloc$sourcefile >\$(DEPS_DIR)/$sourcebasename.d", "-", "MAKE_DEPEND_C $sourcefile > \$(DEPS_DIR)/$sourcebasename.d" );
		}
	    }
	}
    }

    if ($has_sources) {
	print FD "\$(DEPS_DIR)/timestamp: ";
	# FIXME: Create a single list of source files (remove duplicates)
	foreach $lib (keys(%libraries)) {
	    $sourcefiles = $libraries{$lib};
	    PrintMakeLongline( FD, "$sourcefiles ", "append" );
	}
	foreach $pgm (keys(%programs)) {
	    print "Adding sources for $pgm to deps\n" if $debug;
	    $sourcefiles = $programs{$pgm};
	    PrintMakeLongline( FD, "$sourcefiles ", "append" );
	}
	# Add Makefile as a dependency, since changes in the Makefile
	# can change the dependencies (particularly different configure 
	# choices)
	PrintMakeLongline( FD, "Makefile", "last" );

	# We always use a "newalldeps" incase there is a failure 
	# creating the new list of dependency files.
	print FD "\trm -f \$(DEPS_DIR)/newalldeps$newline";
	my %sawFile = ();
	foreach $lib (keys(%libraries)) {
	    foreach $sourcefile (split(/\s+/,&ExpandMakeVars($libraries{$lib}))) {
		if (defined($sawFile{$sourcefile})) { next; }
		$sawFile{$sourcefile} = 1;
		my $srcdirloc = '$(srcdir)/';
		$ext = $sourcefile;
		$ext =~ s/^.*\.//g;
		$sourcebasename = $sourcefile;
		$sourcebasename =~ s/\.\w*$//;
		if ($ext eq "c") {
		    if (! -s $sourcefile) {
			$srcdirloc = '';
		    }
		    $objfiles = "_$sourcebasename.o $sourcebasename.o";
		    if ($do_sharedlibs || $found_sharedlib) {
			$objfiles .= " $sourcebasename.lo _$sourcebasename.lo";
		    }
		    $targetOpts = "-MT \'$objfiles\'";
		    if (!$found_profilelib) {
			$targetOpts = "";
		    }
		    &PrintVerboseOptionCommand( "\$(MAKE_DEPEND_C) $targetOpts $srcdirloc$sourcefile >\$(DEPS_DIR)/$sourcebasename.d", "-", "MAKE_DEPEND_C $sourcefile > \$(DEPS_DIR)/$sourcebasename.d" );
		    print FD "\techo \"$makeInclude \$(DEPS_DIR)/$sourcebasename.d\" >>\$(DEPS_DIR)/newalldeps$newline";
		}
	    }
	}

	# Programs
	foreach $pgm (keys(%programs)) {
	    foreach $sourcefile (split(/\s+/,$programs{$pgm})) {
		if (defined($sawFile{$sourcefile})) { next; }
		print "Adding deps command for program source $sourcefile\n" if $debug;
		$sawFile{$sourcefile} = 1;
		my $srcdirloc = '$(srcdir)/';
		$ext = $sourcefile;
		$ext =~ s/^.*\.//g;
		$sourcebasename = $sourcefile;
		$sourcebasename =~ s/\.\w*$//;
		if ($ext eq "c") {
		    if (! -s $sourcefile) {
			$srcdirloc = '';
		    }
		    $objfiles = "_$sourcebasename.o $sourcebasename.o";
		    if ($do_sharedlibs || $found_sharedlib) {
			$objfiles .= " $sourcebasename.lo _$sourcebasename.lo";
		    }
		    $targetOpts = "-MT \'$objfiles\'";
		    if (!$found_profilelib) {
			$targetOpts = "";
		    }
		    &PrintVerboseOptionCommand( "\$(MAKE_DEPEND_C) $targetOpts $srcdirloc$sourcefile >\$(DEPS_DIR)/$sourcebasename.d", "-", "MAKE_DEPEND_C $sourcefile > \$(DEPS_DIR)/$sourcebasename.d" );
		    print FD "\techo \"$makeInclude \$(DEPS_DIR)/$sourcebasename.d\" >>\$(DEPS_DIR)/newalldeps$newline";
		}
	    }
	}

	print FD "\tif [ -s \$(DEPS_DIR)/newalldeps ] ; then mv -f \$(DEPS_DIR)/newalldeps \$(DEPS_DIR)/alldeps ; fi$newline";
	print FD "\tdate >\$(DEPS_DIR)/timestamp$newline";

	print FD "$makeInclude \$(DEPS_DIR)/alldeps$newline";
    }
    
    print FD "# End of Dependencies$newline";
    print FD $makeBlockSep;
}

sub DistCleanDependencies {
    # Eventually, this should output only in Makefiles that have the 
    # dependencies directory
    print FD "\t-${quietLine}rm -rf \$(DEPS_DIR)$newline";
}

# ===========================================================================
#
# Routines to support autoconf and configure, including extracting information
# from the configure file and rebuilding configure from configure.in
#
#
# Extract derived files from autoconf
# Also record whether there is an AC_CONFIG_HEADER
# If AC_OUTOUT contains any shell variables, you can use
#   <variable_name>_VALUES=vals 
# (all on one line!) to provide the set of possible values.
# Otherwise, no special code will be generated for those output files,
# and a warning message will be issued.
# FIXME: the name is recorded and added to the files, but simplemake
# may not be careful about the file or about directory paths involving the
# xxx_VALUE variable.  Still experimental
sub ReadAutoconf {
    $configure_has_config_headers = "no";
    %confvars = ();
    open FDCONF, "configure.in" || die "Could not open configure.in file";
    while (<FDCONF>) {
	#if (/^\s*#/) { next; }
	if (/^\s*AC_CONFIG_HEADER\((.*)\)/) {
	    # Record file name of header in result variable
	    # We also need to add this to the list of files to remove
	    # in the distclean target
	    $configure_has_config_headers = $1;
	}
	if (/^\s*(\w*)_VALUES=(.*)/) {
	    # This is a special case, used below
	    $confvars{$1}=$2
	}
	if (/^\s*AC_OUTPUT\(/) {
	    # First, read past all continued lines
	    $line = "";
	    # Remove any M4 dnl line
	    s/\sdnl\s.*//;
	    # Later versions of Autoconf do not require explicit continuation
	    # so we also read until we find the closing paren
	    while (/\\\s*$/) {
		s/\r?\n$//; # Removes eol on both Unix and Windows
		chop($_); # remove the backslash
		$line .= $_;
		$_ = <FDCONF>;
		die "unexpected EOF in configure.in, aborting" unless defined $_;
		# Remove any M4 dnl line
		s/\sdnl\s.*//;
		# Remove any shell comment line
		s/\s#.*//;
	    }
	    $line .= $_; 
	    $line =~ s/\r?\n$//; # Removes eol on both Unix and Windows
	    $line =~ s/,.*/\)/;  # Changes a ,... to ) to handle
                                 # AC_OUTPUT(files...,[command]),
                                 # where the final ) may not be on this line
	    #print $line;
	    # If there's no closing paren yet, keep reading
	    while (! ($line =~ /\)/)) {
		$_ = <FDCONF>;
		die "unexpected EOF in configure.in, aborting" unless defined $_;
		s/\r?\n$//; # Removes eol on both Unix and Windows
		# Remove any M4 dnl line
		s/\sdnl\s.*//;
		# Remove any shell comment line
		s/\s#.*//;
		$line .= $_ . " ";
	    }
	    #print "ac_output line = $line\n";
	    $line =~ /^\s*AC_OUTPUT\((.*)\)\s*$/;
	    $files = $1;
	    if (! defined($files) ) {
		print STDERR "Unable to find file names in AC_OUTPUT\n";
		$files = "";
	    }
	    #print "files for ac_output = $files\n";
	    @autoconf_files = split(/\s+/,$files);
	    # Create a hash by directory
	    # FIXME: Should curdir be blank by default?
	    if (!$curdir) { $curdir = ""; }
	    $lcurdir = $curdir;
	    $lcurdir =~ s/\/$//;
	    foreach $file (@autoconf_files) {
		if ($file =~ /^(.*)\/([^\/]*)$/) {
		    # File contains a directory path, so update the
		    # appropriate directory entry
		    my $ndir     = "$curdir$1";
		    my $leaffile = $2;

		    if (defined($autoconf_files_by_dir{$ndir})) {
			$autoconf_files_by_dir{$ndir} .= " $leaffile";
		    }
		    else {
			$autoconf_files_by_dir{$ndir} = "$leaffile";
		    }
		    #print "{$ndir} .= $2\n";
		    # Also add files that are in directories with no simplemake
		    # input (e.g., in include directories with no makefile)
		    if (! -s "$ndir/Makefile.sm") {
			if (defined($autoconf_files_by_dir{$lcurdir})) {
			    $autoconf_files_by_dir{$lcurdir} .= " $file";
			}
			else {
			    $autoconf_files_by_dir{$lcurdir} = "$file";
			}
		    }
		    else {
			# We also need to handle files that do have a 
			# Makefile.sm,
			# but that aren't in the "usual" path.  Those
			# are directories that are not included in the
			# SUBDIRS path.  These are used only by the distclean
			# target
			$autoconf_files_by_dir_orig{$lcurdir} .= " $file";
		    }
		}
		elsif ($file =~ /^\$[\{\(]?(\w*)[\}\)]?/) {
		    # Another special case.  The name is actually
		    # a shell variable.  This is too hard for us right now,
		    # so generate a warning and do NOT add it to the list
		    # To handle this case, you can provide
		    # <variable-name>_VALUES
		    $varname = $1;
		    if (defined($confvars{$varname})) {
			# add to autoconf_files_by_dir
			foreach $filename (split(/\s+/,$confvars{$varname})) {
			    $autoconf_files_by_dir{$lcurdir} .= " $file";
			}
		    }
		    else {
			print STDERR "Shell variable $varname will not be added to the list\
of known autoconf files for ";
			if (defined($lcurdir) && $lcurdir ne "") {
			    print STDERR "$lcurdir.\n";
			}
			else {
			    print STDERR "the top directory.\n";
			}
		    }
		}
		elsif ($file =~ /^.*$/) {
		    if (defined($autoconf_files_by_dir{"$lcurdir"})) {
			$autoconf_files_by_dir{"$lcurdir"} .= " $file";
		    }
		    else {
			$autoconf_files_by_dir{"$lcurdir"} = "$file";
		    }

		    #print "{$lcurdir} .= $file\n";
		}
	    }
	    # Add files that configure generates in the current directory
	    $autoconf_files_by_dir{$lcurdir} .= " config.status config.log config.cache *conf.cache config.system";
	    #print "$files\n";
	    last;
	}
    }
    close FDCONF;
}
#
# Find how to get from path_child to path_parent.  Return as
# ../.. etc, suitable for using cd to get to the parent
sub GetPathToParent {
    my ($path_child, $path_parent) = @_;
    # Remove parent path from child path
    if (defined($path_parent)) {
	# first, deal with a possible "." path
	$path_parent = quotemeta $path_parent;
	#print "path_parent = $path_parent, child = $path_child\n";
	$path_child =~ s/^$path_parent//;
	#print "After parent, child = $path_child\n";
	# convert all of the non directory separators into ..
    }
    else {
	print STDERR "Path to parent is unknown in GetPathToParent\n";
	# Set a default
	$path_child = ".";
    }
    $path_child =~ s/[^\/\.]*\//..\//g;
    return $path_child;
}

#
# Remove any trailing .. from the directory as well as that many directories
sub CleanCurDir {
    my $dir = $_[0];
    my $depth = 0;

    # Handle any /.. at the end
    print "Cleaning directory name $dir...\n" if $debug_confdir;
    $dir =~ s/\/$//;
    while ($dir =~ /\/\.\.$/) {
	$depth++;
	$dir =~ s/\/\.\.$//;
    }
    while ($depth > 0) {
	$dir =~ s/\/[^\/]*//;
	$depth--;
    }

    # We sometimes get ../ in the middle
    while ($dir =~ /(.*)\/[^\/\.]+\/\.\.(.*)/) {
	print "Changing $dir to $1$2\n" if $debug_confdir;
	$dir = "$1$2";
    }
    if ($dir ne "") { $dir .= "/"; }
    print "Cleaned directory name is $dir\n" if $debug_confdir;
    return "$dir";
}    
#
# ===========================================================================
# Pretty print output lines.  These routines insert line breaks and tabs
# to keep the generated makefile from being too ugly.  These also use
# tabs after a continuation line.
$linelen = 0;
sub printInit {
    $linelen = 0;
}
sub print_make_line {
    my $FD = $_[0];
    my $line = "$_[1]";
    my $len = length($line);
    if ($linelen + $len + 2 > $maxline) {
	print $FD "\\$newline\t";
	$linelen = 8;
    }
    print $FD $line;
    $linelen += $len;
    }
# print_make_line_nobreak is like print_make_line, but it never breaks a line
# This is needed when the output is a configure variable that may end 
# up being replaced with blanks; if this occurs alone on a line, some
# make programs become confused.
sub print_make_line_nobreak {
    my $FD = $_[0];
    my $line = "$_[1]";
    my $len = length($line);
    print $FD $line;
    $linelen += $len;
    }
sub print_make_endline {
    my $FD = $_[0];
    print $FD $newline;
    $linelen = 0;
}
sub print_make_setpos {
    $linelen = $_[0];
}
# print_make_longline is intended for printing long lines that contains blanks
# This adds the newline at the end
sub print_make_longline {
    my $FD = $_[0];
    my $line = $_[1];
    &PrintMakeLongline( $FD, $line, "last" );
}

# New print routines
# PrintMakeLongline( FD, line, flag ) - line may have spaces, will break
# as spaces in line.  Flag may be "append" or "last".  line may be empty
# (to use flag = "last" to terminate.
sub PrintMakeLongline {
    my $FD = $_[0];
    my $line = $_[1];
    my $flag = $_[2];

    my $len = length( $line );
    if ($linelen + $len + 2 < $maxline) {
	print $FD $line;
    }
    else {
	# Use space, not \s, because we want tabs to remain tabs
	foreach my $token (split(/ /,$line)) {
	    # We must be careful not to add a blank if the token is
	    # a \ used at the end of a line to continue to the 
	    # next line
	    if ($token eq "\\") {
		&print_make_line( $FD, "$token" );
	    }
	    else {
		&print_make_line( $FD, "$token " );
	    }
	}
    }
    if ($flag eq "last") {
	&print_make_endline( $FD );
    }
}
# Print a Make variable definition only if it hasn't been made already
# Add and prepend value that may have been specified
sub printMakeVariable {
    my ($FD,$var,$definition) = @_;

    if (!defined($addedMakeVars{$var})) {
	$addedMakeVars{$var} = $definition;
	if (defined($PrependVar{$var})) {
	    $definition = $PrependVar{$var} . $definition;
	}
	my $nspace = 16 - length($var);
	my $blanks = "";
	while ($nspace > 0) { $blanks .= " "; $nspace-- }
	PrintMakeLongline( $FD, "$var$blanks= $definition", "last" );
    }
    elsif ($addedMakeVars{$var} ne $definition) {
	my $value = $addedMakeVars{$var};
	print STDERR "Variable $var, being defined with $definition, already has value $value\n";
    }
}
#
# Find a working autoconf.
# If the variables autoconf and autoconf_version are set, try to
# find one that works in the user's path.  The format for these
# variables is
#   autoconf = name:name:...:lasthope
#   autoconf_version = number
#   Check each autoconf name for handling version.  If all else fails,
#   unconditionally accept lasthope
sub FindWorkingAutoconf {
    if ($autoconf_version ne "") {
	foreach $file (split(/:/,$autoconf)) {
	    $lastfile = $file;
	    # Grumble.  I need to redirect stderr to stdout before this
	    # open.  We use open with a pipe and then exec so that we
	    # can get stderr redirection to work correctly.
	    #
	    # Additional grumble.  Perl doesn't flush output the
	    # way you'd like.  Of course, if you turn on -debug,
	    # things do get flushed.
	    $pid = open( ACFD, "-|");
	    if ($pid == 0) {
		close FD;  # without flushing
		open STDIN, "/dev/null";
		open STDERR, ">>&STDOUT";
		exec split(/\s+/,"$file --version");
	    }
	    else {
		$found_version = "";
		while (<ACFD>) {
		    print STDERR "$_" if $debug;
		    if (/[Aa]utoconf\s.*([12]\.[0-9]+)/) {
			$found_version = $1;
			last;
		    }
		}
		close( ACFD );
		print STDERR "Autoconf $file is version $found_version\n" if $debug;
		if ($found_version >= $autoconf_version) {
		    $autoconf = $file;
		    print STDERR "Using autoconf $file\n" if $debug;
		    return;
		}
	    }
	}
	# If we got here, use the lastchance
	$autoconf = $lastfile;
    }
}
#
# ----------------------------------------------------------------------------
# Coverage analysis
# One useful target for package maintainers is coverage analysis.  
# The following code creates the targets for the gcc coverage analyzer, 
# gcov.  In tests, this analyzer worked with programs built from libraries
# and with sources in multiple directories.
#
# To use the gcc coverage analyzer, the following steps must be taken
# 1.  All file must be compiled with -fprofile-arcs -ftest-coverage, and
#     without optimization
# 2.  Programs are run as usual
# 3.  To create coverage data, run
#         gcov -f -b sourcefile
#     over all source files.  The result is (for each sourcefile) a
#     new file, "sourcefile.gcov", which annotates the source file with
#     the number of times each statement was executed
#
# To add support for these, simplemake adds the following targets in
# maintenance target mode (e.g., not in the distributed version):
#     Add to clean (all with ${srcdir}) *.bb, *.bbg, *.da, *.c.gcov .  
#         These are all created by either gcc or by running programs
#         built with -ftest-coverage.
#     Add a recursive coverage target that does:
#         Run gcov on each source file (if any), where a .da file is present
#     We may be able to use a target like:
#         $*.c.gcov depends on $*.da (.da.gcov)
#     We let the configure step add the compiler options (so that a 
#     separate simplemake build is not required to add or remove 
#     coverage analysis.
#
# ToDo: 
# In the install step, mkdir isn't right, since it will make only one
# directory level, and mkdir -p isn't universally available.  We probably
# need either a MKDIR_P command, determined byu configure, or an
# mkinstalldirs script.  I'd prefer a mkdirp script, used only if mkdir -p
# did not work, and chosen by configure in that case.
# This is partially done (MKDIR_P and that is set to mkdir -p)
# ----------------------------------------------------------------------------
# Add the clean target for the coverage analyzer.
# We inculde the local directory because, particularly for the test programs,
# these files may be left in the current directory rather than the source
# directory.
#
sub GcovClean {
    if ($maint_targets) {
	print FD "\t-${quietLine}rm -f \${srcdir}/*.bb \${srcdir}/*.bbg \${srcdir}/*.da$newline";
	print FD "\t-${quietLine}rm -f \${srcdir}/*.gcda \${srcdir}/*.gcno$newline";
	print FD "\t-${quietLine}rm -f *.gcov *.bb *.bbg *.da *.gcda *.gcno$newline";
    }
}

# coverage target
sub TargetGcov {
    if (!$maint_targets) { return; }
    &TargetInit( "coverage" );
    print FD "$newline";
    foreach $lib (keys(%libraries)) {
	$sourcefiles = $libraries{$lib};
	PrintMakeLongline( FD, 
	   "\t-${quietmake}for file in $sourcefiles ; do \\", "last" );
	print FD "\t\tgcov -b -f \$\$file ; done$newline";
    }
    &RecursiveOp( "coverage" );
    &TargetPostamble( "coverage" );
}
# 
# ----------------------------------------------------------------------------
#
# ToDo
# Should we add a target to strip debugging information from the object files?
# For example, strip -S *.o .  Ths usually isn't necessary if -g is not
# selected when building the object files.
#
# David Ashton suggests an option to print a warning message for 
# each source file (e.g., *.c, *.cxx, *.f, *.f90) that has no corresponding
# entry in the Makefile.sm 
#
# Here is a start on that.
# What is still needed is a way to check for defined sources when the source 
# files are named in a variable (e.g., xxx_SOURCE = ${foobar}, then we
# need to expand foobar.  This is not done systematically yet, in part
# because we want to preserve the use of variables in the Makefile.
sub checkForTargets {
    opendir DIR, ".";
    my $filename;
    my %knownExts = ( "c" => 1, "f" => 1, "f90" => 1, "cxx" => 1 );
    my %knownHeaders = ( "h" => 1, "i" => 1 );
    while ($filename = readdir DIR) {
	my $ext = "";
	if ($filename =~ /\.(\w+)$/) {
	    $ext = $1;
	}
	if (defined($knownExts{$ext})) {
	    # Found a source file.  Did we see this file in the source lists?
	    if (! defined($sources{$filename})) {
		print STDERR "File $filename did not appear in $curdir/Makefile.sm\n";
	    }
	}
	if (defined($knownHeaders{$ext})) {
	    # Found a header file
	    if (! defined($headers{$filename})) {
		print STDERR "File $filename did not appear in headers in $curdir/Makefile.sm\n";
	    }
	}
    }
    closedir DIR;
}
#
#  ------------------------------------------------------------------------
# Comments and explanation for the various library rules (new version)
# 
# 1) GNU tools attempt to generate several files at the same time.
#    For example, dependency generation is best viewed (when done with gcc)
#    as a side effect of compiling.  Libtool, used to produce shared 
#    libraries, normally produces both .o and .lo files (objects for 
#    conventional, non-shared libraries, and objects for shared libraries).
#
# 2) Make does not reliably determine dependencies between source and result 
#    files when the result file has recently been modified.  There are two 
#    sources to this problem: the obvious one of inconsistent time-of-day
#    values between the system on which the build is occuring and the 
#    system with the source or destination files.  The more subtle problem, 
#    verified by using detailed debugging, is that gnumake and makes with
#    similar implementations sometimes use a "less than or equal to" test
#    where they should use a "less than" test (it wouldn't be so bad if they 
#    used *either* version consistently.  Because of the inconsistent use, some
#    files will be rebuilt (dependency rule triggered) but then not added to 
#    the library (dependency rule *not* triggered).  
# 
# 3) The profiling library construction needs to handle several cases,
#    including the case where all of the files are in a single library, 
#    in two libraries, and where weak symbols are or are not available.
#
# These led to the following changes:
#
#    To work around (2), without having a shadow copy of the library in 
#    every directory, we use a timestamp file that is updated (in the same 
#    directory as the object files) when the objects are updated.  
#
#    For (3), the original design used a 

# ( $optype, $opname, $opsources )
sub CallModule {
    my ( $optype, $opname, $opsources ) = @_;
    # Have we already loaded the module?
    my $fcname = "Module_" . $optype;
    if (!defined($fcname)) {
	foreach my $dir (split(/:/,".:$abs_mpich2srcdir/maint")) {
	    if (-s $dir/$fcname) {
		require "$dir/$fcname";
		last;
	    }
	}
	if (!defined($fcname)) {
	}
    }

    &$fcname( $optype, $opname, $opsources );
}

#
# Replace old file with new file only if new file is different
# Otherwise, remove new filename 
sub ReplaceIfDifferent {
    my ($oldfilename,$newfilename) = @_;
    my $rc = 1;
    if (-s $oldfilename) { 
	$rc = system "cmp -s $newfilename $oldfilename";
	$rc >>= 8;   # Shift right to get exit status
    }
    if ($rc != 0) {
	my $cleancurdir = $curdir;
	$cleancurdir =~ s/\/$//;
	# The files differ.  Replace the old file 
	# with the new one
	if (-s $oldfilename) {
	    print STDERR "Replacing $cleancurdir/$oldfilename\n";
	    unlink $oldfilename;
	}
	else {
	    print STDERR "Creating $cleancurdir/$oldfilename\n";
	}
	rename $newfilename, $oldfilename || 
	    die "Could not replace $cleancurdir/$oldfilename\n";
    }
    else {
	unlink $newfilename;
    }
}

#
# For all libraries in a given optional_files install class, generate the
# steps to create the shared library 
# 
sub CreateOptInstallSHLibs {
    my $libClass = $_[0];

    foreach $libspec (split(/\s+/,$optinstall_files{$libClass})) {
	if ($libspec =~ /(.*)\/([^\/]*)/) {
	    $libdir = $1;
	    $libname = $2;
	}
	else {
	    # The library is built in this directory
	    $libdir = ".";
	    $libname = $libspec;
	}
	$libsrc = $libname;
	if ($libsrc =~ /\.so$/) {
	    $libsrc =~ s/\.so/\.la/;
	}
	elsif ($libsrc =~ /\.\@SHLIB_EXT\@$/) {
	    $libsrc =~ s/\.\@SHLIB_EXT\@$/.la/;
	}
	else {
	    print STDERR "Unrecognized suffix on library $libsrc\n";
	}
	# Note that we skip the related file names, since
	# their build is already handled
	my $baselibname = $libname;
	$baselibname =~ s/^lib//;
	$baselibname =~ s/\..*//;
	if (!defined($profile_libraries_basename{$baselibname})) {
	    # Skip libraries that will be built in the step 
	    # below
	    if (!defined($shared_libraries{$baselibname})) {
		print "Building sharedlib library $baselibname (from $libname) in $libdir as part of optinstall\n" if $gDebugWhy;
		&TargetSharedLibraryFinal( $libsrc, $libname, $libdir );
	    }
	}
    }
}

# ---------------------------------------------------------------------------
# These routines support the handling of extensions to simplemake.
# There are several kinds of extensions.
# One of the simplest is for new commands.  In this case, extensions are added 
# by defining an "action"; this is associated with
#  "Command"
# Such an extension is placed into a file with extension .smlib;
# it must add the action to known commands and 
# provide the function
#    Action<commandname>
# In addition, the following may be defined:
#    Clear<commandname>           - Called to clear variables between reading 
#                                   Makefile.sm
#    Output<commandname>          - Call to add output to the generated file
#    OutputHeader<commandname>    - Call to add output to the header in the
#                                   generated file
#    OutputLib<commandname>       - Call to add output for a particular library
#    OutputLibDependencies<commandname> - Add dependencies to the make 
#                                   target for the specified library
#    OutputClean<commandname>     - Call to add output for the clean target
#    OutputDistClean<commandname> - Call to add output for the distclean target
#    OutputMaintainerClean<commandname> - Call to add output for the 
#                                   maintainerclean target
#    
# These routines may also update variables used by simplemake.  
# 
# SMReadDefnFiles( directory ) - include all files with extension .smlib
# from the specified directory.
sub SMReadDefnFiles {
    my $dir = $_[0];
    my $DIR = "SMDIR";

    opendir ($DIR, "$dir" ) or return;
    while ($file = readdir($DIR)) {
	if ($file =~ /\.smlib$/) {
	    require "$dir/$file";
	}
    }
    closedir( $DIR );
}
# Invoke a function, defined as <name><module>, for all known functions, 
# The argument is the name of the action.  All of the argument are passed
# to the function (including the first, its own name)
sub SMInvokeAction {
    my $name = $_[0];
    foreach my $module (@KnownActions) {
	my $function = "${name}${module}";
	if (defined(&$function)) {
	    print "Invoking $function\n" if $debug;
	    &$function ( @_ );
	}
    }
}

#
# Print a command with a VERBOSE option.  The format is
#   PrintVerboseOptionCommand( cmd, altprefix, echocmd )
# altprefix and echocmd are optional.
# If echocmd is provided, this is echoed (rather than the actual command)
# Otherwise, if altprefix is provided, the first token (up to the first
# space) in cmd is replaced with altprefix.
# Examples:
#  &PrintVerboseOptionCommand( "cc -c \$<", "CC" )
# will run 
#  cc -c $<
# but will echo
#  CC -c $<
# (this is a typical Linux build output, and is intended to be interpreted
# as 
#  $(CC) -c $< 
#
# Note that empty arguments are not properly handled in Perl (they are ignored,
# so a,,b looks like a,b to Perl!), so "-" may be used as an empty altprefix
sub PrintVerboseOptionCommand {
    my $cmd       = $_[0];
    my $altprefix = $_[1];
    my $echocmd   = $_[2];

    if (defined($altprefix) && $altprefix ne "" && $altprefix ne "-") {
	my $cmdline = $cmd;
	$cmdline =~ /[\S]+(\s.*)/;
	$cmdline = $1;
	if (defined($echocmd) && $echocmd ne "") {
	    print STDERR "Invalid to define both altprefix ($altprefix) and echocmd ($echocmd)\n";
	}
	$echocmd = $altprefix . $cmdline;
    }
    elsif ($echocmd eq "") {
	$echocmd = $cmd;
    }

    my $escaped_rule = $cmd;
    $escaped_rule =~ s/$newline(\t+)\@*/ ; \\$newline$1echo /g;

    print FD "\t\@if [ \"x\$(VERBOSE)\" != \"x1\" -a \"x\$(V)\" != \"x1\" ] ; then \\$newline";
    print FD "\t  echo \"$echocmd\" ; \\$newline";
    print FD "\telse \\$newline";
    print FD "\t  echo $escaped_rule ; \\$newline";
    print FD "\tfi$newline";
    print FD "\t\@$cmd$newline";
}