<?xml version="1.0" encoding="UTF-8"?>
<?xml-stylesheet type="text/xsl" href="./applications.xsl"?>
<applications xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:noNamespaceSchemaLocation="./applications.xsd">

 <application link="http://www-unix.mcs.anl.gov/appliedmath/Flow/cfd.html">
  <name>nekton</name>
  <institution>Argonne</institution>
  <domain>Navier Stokes using spectral element method</domain>
  <technique> Navier Stokes using spectral element method </technique>
  <contact>Paul Fisher</contact>
  <status>Very good scaling to full rack.
          Single proc performance of mat-mat product is not as good
          as e.g. power3. Double-hummer helps little. Lots of work
          trying to optimize mxm.
  </status>
 </application>
 
 <application link="http://climate.lanl.gov/Models/POP">
   <name>POP</name>
   <institution>Los Alamos</institution>
   <domain>Oceanography</domain>
   <technique>primitive equations on sphere -- hydrostatic, Boussinesq</technique>
   <contact>Ray Loy</contact>
   <status> Some large scaling tests vs. X1 with promising results. Little
   single proc analysis.</status>
 </application>

 <application>
   <name>QMC</name>
   <institution>Argonne</institution>
   <domain>Nuclear Physics</domain>
   <technique>Nuclear binding energy using Monte Carlo</technique>
   <contact>Steve Pieper</contact>
   <status>Significant science results. Extensive performance tests. 
           Good scalability as expected for typical problems. 
           Larger nucleus runs now possible (using -qnosave).
           Single proc performance adequate modulo double-hummer (not being used). 
   </status>
 </application>

 <application link="http://www.itc.univie.ac.at/~hans/Columbus/columbus_main.html">
  <name> Columbus </name>
  <institution>Ohio State University</institution>
  <domain>Quantum Chemistry</domain>
  <technique>ab-initio electronic structure (many techniques)</technique>
  <contact>Ron Sheperd</contact>
  <status>Not yet ported. Requires Global Arrays (GA) Library</status>
 </application>

 <application>
  <name> Pneo </name>
  <institution>UC/Argonne</institution>
  <domain>Neuroscience</domain>
  <technique>Hodgkin-Huxley Model</technique>
  <contact>Mark Hereld</contact>
  <status>Many tests run using full machine. Still many optimizations to try. No clear 
          story on performance as of yet.
  </status>
 </application>

 <application link="http://flash.uchicago.edu">
  <name>Flash</name>
  <institution>UC/Argonne</institution>
  <domain>astrophysics</domain>
  <technique> Incompressible hydro, nuclear reactions, EOS, MHD, etc.</technique>
  <contact>Katherine Riley</contact>
  <status>Perfect weak scaling for pure hydro. Multigrid tests pending</status>
 </application>

 <application link="http://mpiblast.lanl.gov">
  <name>mpiBlast</name>
  <institution>Los Alamos</institution>
  <domain>Molecular Biology</domain>
  <technique>database search and match</technique>
  <contact>Carlos Sosa</contact>
  <status>Serial part ported, parallel part still pending. 
          Carlos Sosa from IBM has taken the lead on this</status>
 </application>

 <application>
  <name>QCD</name>
  <institution>Argonne</institution>
  <domain>Sub-nuclear physics</domain>
  <technique>Lattice QCD (conjugate gradient to invert Dirac)</technique>
  <contact>Don Sinclair</contact>
  <status>Very poor single proc performance reported 
          (no use of double hummer, not clear what else). 
          PI has put further testing on hold. Discussion</status>
 </application>

 <application link="http://nimrodteam.org">
  <name>Nimrod</name>
  <institution>Wisconsin, Gen Atomics, CU-Boulder, UCLA</institution>
  <domain>Fusion</domain>
  <technique>Non-ideal MHD with rotation (finite element)</technique>
  <contact>Dinesh Kaushik</contact>
  <status>Full machine tests run, awaiting analysis.</status>
 </application>

 <application link="http://fusion.gat.com/comp/parallel/gyro.html">
  <name>Gyro</name>
  <institution>General Atomics</institution>
  <domain>Fusion</domain>
  <technique>Eulerian gyrokinetic-Maxwell solver</technique>
  <contact>Boyana Norris</contact>
  <status>Ported, small tests run, trying to scale beyond 128</status>
 </application>

 <application link="http://www.cse.clrc.ac.uk/msi/software/DL_POLY">
  <name>DL_POLY</name>
  <institution>Daresbury Lab</institution>
  <domain>Nano-chemistry</domain>
  <technique>Molecular dynamics package with provisions for periodic boundary conditions suitable for slabs and solids.</technique>
  <contact>Peter Zapol</contact>
  <status>Super-linear (very good) scaling up to 32 procs</status>
 </application>

 <application link="http://lcd-www.colorado.edu/SPTP/sptp_global.html">
  <name>ASH</name>
  <institution>CU-Boulder</institution>
  <domain>Solar Phyiscs</domain>
  <technique>Spherical harmonic anelasic solver </technique>
  <contact>Juri Toomre</contact>
  <status> Port still pending</status>
 </application>

 <application> 
  <name>QGMG</name>
  <institution>CU-Boulder</institution>
  <domain>Oceanography</domain>
  <technique>Forced quasi-geostrophic turbulence in
             bounded domain using multigrid</technique>
  <contact>Andrew Siegel</contact>
  <status>ort being prepared (pvm->mpi)</status>
 </application>

 <application link="http://www-fp.mcs.anl.gov/petsc-fun3d">
  <name>Petsc FUN3D</name>
  <institution>Argonne/Goddard</institution>
  <domain>General CFD</domain>
  <technique>Unstructured N-S solver (compressible | incompressible)</technique>
  <contact>Dinesh Kaushik</contact>
  <status>Full machine tests with good results</status>
 </application>

 <application link="http://amber.scripps.edu">
  <name>Amber</name>
  <institution>Scripps</institution>
  <domain>Computational Biology</domain>
  <technique>molecular mechanical force fields</technique>
  <contact>Pratul Argawal</contact>
  <comment>Compiled and ran on small proc configurations. vn mode looks promising</comment>
 </application>

 <application link="http://w3.pppl.gov/theory/GPSC.html">
  <name> GTC </name>
  <institution>PPPL</institution>
  <domain>Plasma Physics</domain>
  <technique>gyrokinetic torioidal, particle-in-cell</technique>
  <contact>Stephane Ethier</contact>
  <comment>scaled to full machine with good success. submitted full report after workshop</comment>
 </application>

 <application link="http://www.cfdrc.com/nemo">
  <name>NEMO_3D</name>
  <institution>Raytheon</institution>
  <domain>Nanoelectronic Modelling</domain>
  <technique/>
  <contact/> 
  <comment>Still trying to build</comment>
 </application>

 <application link="http://www.ccs.ornl.gov/mri/repository/LSMS/index.html">
  <name>LSMS</name>
  <institution>ORNL</institution>
  <domain>LSMS Electronic Structure</domain>
  <technique>Interactions between electrons and atoms in magnetic materials</technique>
  <contact>Don Nicholson</contact>
  <status> Compiled and ran easily.  Code gets almost perfect weak
           scaling. Virtual node gives 1.5 to 1.9x speedup depending on time spent
           in zgemm. I'm still working on timing with different options</status>

 </application>

 <application link="http://www.llnl.gov/asci/platforms/purple/rfp/benchmarks/limited/mdcask">
  <name>MDCASK</name>
  <institution>LLNL</institution>
  <domain>Molecular Dynamics</domain>
  <technique>Eqn of Motion with 4th-order Pred-Cor</technique>
  <contact/>
  <comment>Compiled and ran very easily. Spent quite a lot of time exploring
                      env settings, processor mapping, compile flags
                      and so on</comment>
 </application>


 <application link="http://www.scd.ucar.edu/css/dynamical_cores/FINAL_bob_doc.pdf">
  <name>BOB</name>
  <institution>NCAR</institution>
  <domain>Climate</domain>
  <technique>Shallow Water Equations</technique>
  <contact/>
  <status> had to hack namelist real(5,*) - processor performance is not so
                       great, but working on it! communications works
  </status>
 </application>

 <application link="http://www.cgd.ucar.edu/tss/clm">
  <name>BGC5.0</name>
  <institution>NCAR</institution>
  <domain>Biogeochemistry</domain>
  <technique/>
  <contact/>
  <status>ported, ran, verified solution. Larger runs pending</status>
 </application>

 <application>
  <name>QCD</name>
  <institution>MIT</institution>
  <domain>Particle Physics</domain>
  <technique/>
  <contact/>
  <status>Requires lower-level messaging than MPI. Came to collect info. 
          Were able to compile most samples and interfaces
  </status>
 </application>

 <application>
  <name>PPanel</name>
  <institution></institution>
  <domain>Fluid Dynamics</domain>
  <technique>Boundary Element Method</technique>
  <contact/>
  <status>Requires PESSL/Scalapack. Had to serialize this portion at workshop. 
          Got working and scaled linearly</status>
 </application>

 <application link="http://www.homme.ucar.edu">
  <name>HOMME</name>
  <institution>NCAR</institution>
  <domain>Climate</domain>
  <technique>high-order methods </technique>
  <contact>Richard Loft</contact>
  <status>compiled, not running correctly yet</status>
 </application>

 <application link="http://sunoptics.caltech.edu/~goffbo/papers/Burr_PECS_poster.pdf">
  <name>FDTD Nanophotonics</name>
  <institution></institution>
  <domain>Nanoscience</domain>
  <technique>Finite Difference Time Domain</technique>
  <contact/>
  <status>Ran on full machine. Very good scaling</status>
 </application>

 <application link="http://www.csm.ornl.gov/chammp/pstswm">
  <name>PSTWSM</name>
  <institution>ORNL</institution>
  <domain>Climate</domain>
  <technique></technique>
  <contact>Pat Worley</contact>
  <status>built. investigating runtime errors</status>
 </application>

 <application>
  <name>Ludwig</name>
  <institution></institution>
  <domain></domain>
  <technique></technique>
  <contact>Lorna Smith</contact>
  <status>document in preparation</status>
 </application>

 <application>
  <name>LAMMP</name>
  <institution></institution>
  <domain></domain>
  <technique></technique>
  <contact>Lorna Smith</contact>
  <status>document in preparation</status>
 </application>

 <application>
  <name>OCCAM</name>
  <institution></institution>
  <domain></domain>
  <technique></technique>
  <contact>Lorna Smith</contact>
  <status>document in preparation</status>
 </application>

 <application>
  <name>CASTEP</name>
  <institution>---</institution>
  <domain></domain>
  <technique></technique>
  <contact>Lorna Smith</contact>
  <status>document in preparation</status>
 </application>



</applications>
