Actual source code: vecimpl.h

petsc-3.11.2 2019-05-18
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  2: /*
  3:    This private file should not be included in users' code.
  4:    Defines the fields shared by all vector implementations.

  6: */

  8: #ifndef __VECIMPL_H

 11:  #include <petscvec.h>
 12:  #include <petsc/private/petscimpl.h>
 13:  #include <petscviewer.h>

 15: PETSC_EXTERN PetscBool VecRegisterAllCalled;
 16: PETSC_EXTERN PetscErrorCode VecRegisterAll(void);

 18: /* ----------------------------------------------------------------------------*/

 20: typedef struct _VecOps *VecOps;
 21: struct _VecOps {
 22:   PetscErrorCode (*duplicate)(Vec,Vec*);         /* get single vector */
 23:   PetscErrorCode (*duplicatevecs)(Vec,PetscInt,Vec**);     /* get array of vectors */
 24:   PetscErrorCode (*destroyvecs)(PetscInt,Vec[]);           /* free array of vectors */
 25:   PetscErrorCode (*dot)(Vec,Vec,PetscScalar*);             /* z = x^H * y */
 26:   PetscErrorCode (*mdot)(Vec,PetscInt,const Vec[],PetscScalar*); /* z[j] = x dot y[j] */
 27:   PetscErrorCode (*norm)(Vec,NormType,PetscReal*);        /* z = sqrt(x^H * x) */
 28:   PetscErrorCode (*tdot)(Vec,Vec,PetscScalar*);             /* x'*y */
 29:   PetscErrorCode (*mtdot)(Vec,PetscInt,const Vec[],PetscScalar*);/* z[j] = x dot y[j] */
 30:   PetscErrorCode (*scale)(Vec,PetscScalar);                 /* x = alpha * x   */
 31:   PetscErrorCode (*copy)(Vec,Vec);                     /* y = x */
 32:   PetscErrorCode (*set)(Vec,PetscScalar);                        /* y = alpha  */
 33:   PetscErrorCode (*swap)(Vec,Vec);                               /* exchange x and y */
 34:   PetscErrorCode (*axpy)(Vec,PetscScalar,Vec);                   /* y = y + alpha * x */
 35:   PetscErrorCode (*axpby)(Vec,PetscScalar,PetscScalar,Vec);      /* y = alpha * x + beta * y*/
 36:   PetscErrorCode (*maxpy)(Vec,PetscInt,const PetscScalar*,Vec*); /* y = y + alpha[j] x[j] */
 37:   PetscErrorCode (*aypx)(Vec,PetscScalar,Vec);                   /* y = x + alpha * y */
 38:   PetscErrorCode (*waxpy)(Vec,PetscScalar,Vec,Vec);         /* w = y + alpha * x */
 39:   PetscErrorCode (*axpbypcz)(Vec,PetscScalar,PetscScalar,PetscScalar,Vec,Vec);   /* z = alpha * x + beta *y + gamma *z*/
 40:   PetscErrorCode (*pointwisemult)(Vec,Vec,Vec);        /* w = x .* y */
 41:   PetscErrorCode (*pointwisedivide)(Vec,Vec,Vec);      /* w = x ./ y */
 42:   PetscErrorCode (*setvalues)(Vec,PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
 43:   PetscErrorCode (*assemblybegin)(Vec);                /* start global assembly */
 44:   PetscErrorCode (*assemblyend)(Vec);                  /* end global assembly */
 45:   PetscErrorCode (*getarray)(Vec,PetscScalar**);            /* get data array */
 46:   PetscErrorCode (*getsize)(Vec,PetscInt*);
 47:   PetscErrorCode (*getlocalsize)(Vec,PetscInt*);
 48:   PetscErrorCode (*restorearray)(Vec,PetscScalar**);        /* restore data array */
 49:   PetscErrorCode (*max)(Vec,PetscInt*,PetscReal*);      /* z = max(x); idx=index of max(x) */
 50:   PetscErrorCode (*min)(Vec,PetscInt*,PetscReal*);      /* z = min(x); idx=index of min(x) */
 51:   PetscErrorCode (*setrandom)(Vec,PetscRandom);         /* set y[j] = random numbers */
 52:   PetscErrorCode (*setoption)(Vec,VecOption,PetscBool );
 53:   PetscErrorCode (*setvaluesblocked)(Vec,PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
 54:   PetscErrorCode (*destroy)(Vec);
 55:   PetscErrorCode (*view)(Vec,PetscViewer);
 56:   PetscErrorCode (*placearray)(Vec,const PetscScalar*);     /* place data array */
 57:   PetscErrorCode (*replacearray)(Vec,const PetscScalar*);     /* replace data array */
 58:   PetscErrorCode (*dot_local)(Vec,Vec,PetscScalar*);
 59:   PetscErrorCode (*tdot_local)(Vec,Vec,PetscScalar*);
 60:   PetscErrorCode (*norm_local)(Vec,NormType,PetscReal*);
 61:   PetscErrorCode (*mdot_local)(Vec,PetscInt,const Vec[],PetscScalar*);
 62:   PetscErrorCode (*mtdot_local)(Vec,PetscInt,const Vec[],PetscScalar*);
 63:   PetscErrorCode (*load)(Vec,PetscViewer);
 64:   PetscErrorCode (*reciprocal)(Vec);
 65:   PetscErrorCode (*conjugate)(Vec);
 66:   PetscErrorCode (*setlocaltoglobalmapping)(Vec,ISLocalToGlobalMapping);
 67:   PetscErrorCode (*setvalueslocal)(Vec,PetscInt,const PetscInt *,const PetscScalar *,InsertMode);
 68:   PetscErrorCode (*resetarray)(Vec);      /* vector points to its original array, i.e. undoes any VecPlaceArray() */
 69:   PetscErrorCode (*setfromoptions)(PetscOptionItems*,Vec);
 70:   PetscErrorCode (*maxpointwisedivide)(Vec,Vec,PetscReal*);      /* m = max abs(x ./ y) */
 71:   PetscErrorCode (*pointwisemax)(Vec,Vec,Vec);
 72:   PetscErrorCode (*pointwisemaxabs)(Vec,Vec,Vec);
 73:   PetscErrorCode (*pointwisemin)(Vec,Vec,Vec);
 74:   PetscErrorCode (*getvalues)(Vec,PetscInt,const PetscInt[],PetscScalar[]);
 75:   PetscErrorCode (*sqrt)(Vec);
 76:   PetscErrorCode (*abs)(Vec);
 77:   PetscErrorCode (*exp)(Vec);
 78:   PetscErrorCode (*log)(Vec);
 79:   PetscErrorCode (*shift)(Vec,PetscScalar);
 80:   PetscErrorCode (*create)(Vec);
 81:   PetscErrorCode (*stridegather)(Vec,PetscInt,Vec,InsertMode);
 82:   PetscErrorCode (*stridescatter)(Vec,PetscInt,Vec,InsertMode);
 83:   PetscErrorCode (*dotnorm2)(Vec,Vec,PetscScalar*,PetscScalar*);
 84:   PetscErrorCode (*getsubvector)(Vec,IS,Vec*);
 85:   PetscErrorCode (*restoresubvector)(Vec,IS,Vec*);
 86:   PetscErrorCode (*getarrayread)(Vec,const PetscScalar**);
 87:   PetscErrorCode (*restorearrayread)(Vec,const PetscScalar**);
 88:   PetscErrorCode (*stridesubsetgather)(Vec,PetscInt,const PetscInt[],const PetscInt[],Vec,InsertMode);
 89:   PetscErrorCode (*stridesubsetscatter)(Vec,PetscInt,const PetscInt[],const PetscInt[],Vec,InsertMode);
 90:   PetscErrorCode (*viewnative)(Vec,PetscViewer);
 91:   PetscErrorCode (*loadnative)(Vec,PetscViewer);
 92:   PetscErrorCode (*getlocalvector)(Vec,Vec);
 93:   PetscErrorCode (*restorelocalvector)(Vec,Vec);
 94:   PetscErrorCode (*getlocalvectorread)(Vec,Vec);
 95:   PetscErrorCode (*restorelocalvectorread)(Vec,Vec);
 96: };

 98: /*
 99:     The stash is used to temporarily store inserted vec values that
100:   belong to another processor. During the assembly phase the stashed
101:   values are moved to the correct processor and
102: */

104: typedef struct {
105:   PetscInt      nmax;                   /* maximum stash size */
106:   PetscInt      umax;                   /* max stash size user wants */
107:   PetscInt      oldnmax;                /* the nmax value used previously */
108:   PetscInt      n;                      /* stash size */
109:   PetscInt      bs;                     /* block size of the stash */
110:   PetscInt      reallocs;               /* preserve the no of mallocs invoked */
111:   PetscInt      *idx;                   /* global row numbers in stash */
112:   PetscScalar   *array;                 /* array to hold stashed values */
113:   /* The following variables are used for communication */
114:   MPI_Comm      comm;
115:   PetscMPIInt   size,rank;
116:   PetscMPIInt   tag1,tag2;
117:   MPI_Request   *send_waits;            /* array of send requests */
118:   MPI_Request   *recv_waits;            /* array of receive requests */
119:   MPI_Status    *send_status;           /* array of send status */
120:   PetscInt      nsends,nrecvs;          /* numbers of sends and receives */
121:   PetscScalar   *svalues,*rvalues;      /* sending and receiving data */
122:   PetscInt      *sindices,*rindices;
123:   PetscInt      rmax;                   /* maximum message length */
124:   PetscInt      *nprocs;                /* tmp data used both during scatterbegin and end */
125:   PetscInt      nprocessed;             /* number of messages already processed */
126:   PetscBool     donotstash;
127:   PetscBool     ignorenegidx;           /* ignore negative indices passed into VecSetValues/VetGetValues */
128:   InsertMode    insertmode;
129:   PetscInt      *bowners;
130: } VecStash;

132: struct _p_Vec {
133:   PETSCHEADER(struct _VecOps);
134:   PetscLayout            map;
135:   void                   *data;     /* implementation-specific data */
136:   PetscBool              array_gotten;
137:   VecStash               stash,bstash; /* used for storing off-proc values during assembly */
138:   PetscBool              petscnative;  /* means the ->data starts with VECHEADER and can use VecGetArrayFast()*/
139:   PetscInt               lock;         /* lock state. vector can be free (=0), locked for read (>0) or locked for write(<0) */
140: #if defined(PETSC_HAVE_VIENNACL) || defined(PETSC_HAVE_CUDA)
141:   PetscOffloadFlag       valid_GPU_array;    /* indicates where the most recently modified vector data is (GPU or CPU) */
142:   void                   *spptr; /* this is the special pointer to the array on the GPU */
143: #endif
144: };

146: PETSC_EXTERN PetscLogEvent VEC_SetRandom;
147: PETSC_EXTERN PetscLogEvent VEC_View;
148: PETSC_EXTERN PetscLogEvent VEC_Max;
149: PETSC_EXTERN PetscLogEvent VEC_Min;
150: PETSC_EXTERN PetscLogEvent VEC_Dot;
151: PETSC_EXTERN PetscLogEvent VEC_MDot;
152: PETSC_EXTERN PetscLogEvent VEC_TDot;
153: PETSC_EXTERN PetscLogEvent VEC_MTDot;
154: PETSC_EXTERN PetscLogEvent VEC_Norm;
155: PETSC_EXTERN PetscLogEvent VEC_Normalize;
156: PETSC_EXTERN PetscLogEvent VEC_Scale;
157: PETSC_EXTERN PetscLogEvent VEC_Copy;
158: PETSC_EXTERN PetscLogEvent VEC_Set;
159: PETSC_EXTERN PetscLogEvent VEC_AXPY;
160: PETSC_EXTERN PetscLogEvent VEC_AYPX;
161: PETSC_EXTERN PetscLogEvent VEC_WAXPY;
162: PETSC_EXTERN PetscLogEvent VEC_MAXPY;
163: PETSC_EXTERN PetscLogEvent VEC_AssemblyEnd;
164: PETSC_EXTERN PetscLogEvent VEC_PointwiseMult;
165: PETSC_EXTERN PetscLogEvent VEC_SetValues;
166: PETSC_EXTERN PetscLogEvent VEC_Load;
167: PETSC_EXTERN PetscLogEvent VEC_ScatterBegin;
168: PETSC_EXTERN PetscLogEvent VEC_ScatterEnd;
169: PETSC_EXTERN PetscLogEvent VEC_ReduceArithmetic;
170: PETSC_EXTERN PetscLogEvent VEC_ReduceCommunication;
171: PETSC_EXTERN PetscLogEvent VEC_ReduceBegin;
172: PETSC_EXTERN PetscLogEvent VEC_ReduceEnd;
173: PETSC_EXTERN PetscLogEvent VEC_Swap;
174: PETSC_EXTERN PetscLogEvent VEC_AssemblyBegin;
175: PETSC_EXTERN PetscLogEvent VEC_DotNorm2;
176: PETSC_EXTERN PetscLogEvent VEC_AXPBYPCZ;
177: PETSC_EXTERN PetscLogEvent VEC_Ops;
178: PETSC_EXTERN PetscLogEvent VEC_ViennaCLCopyToGPU;
179: PETSC_EXTERN PetscLogEvent VEC_ViennaCLCopyFromGPU;
180: PETSC_EXTERN PetscLogEvent VEC_CUDACopyToGPU;
181: PETSC_EXTERN PetscLogEvent VEC_CUDACopyFromGPU;
182: PETSC_EXTERN PetscLogEvent VEC_CUDACopyToGPUSome;
183: PETSC_EXTERN PetscLogEvent VEC_CUDACopyFromGPUSome;

185: PETSC_EXTERN PetscErrorCode VecView_Seq(Vec,PetscViewer);
186: #if defined(PETSC_HAVE_VIENNACL)
187: PETSC_EXTERN PetscErrorCode VecViennaCLAllocateCheckHost(Vec v);
188: PETSC_EXTERN PetscErrorCode VecViennaCLCopyFromGPU(Vec v);
189: #endif
190: #if defined(PETSC_HAVE_CUDA)
191: PETSC_EXTERN PetscErrorCode VecCUDAAllocateCheckHost(Vec v);
192: PETSC_EXTERN PetscErrorCode VecCUDACopyFromGPU(Vec v);
193: #endif


196: /*
197:      Common header shared by array based vectors,
198:    currently Vec_Seq and Vec_MPI
199: */
200: #define VECHEADER                          \
201:   PetscScalar *array;                      \
202:   PetscScalar *array_allocated;                        /* if the array was allocated by PETSc this is its pointer */  \
203:   PetscScalar *unplacedarray;                           /* if one called VecPlaceArray(), this is where it stashed the original */

205: /* Lock a vector for exclusive read&write access */
206: #if defined(PETSC_USE_DEBUG)
207: PETSC_INTERN PetscErrorCode VecLockWriteSet_Private(Vec,PetscBool);
208: #else
209: #define VecLockWriteSet_Private(x,flg) 0
210: #endif

212: /* Default obtain and release vectors; can be used by any implementation */
213: PETSC_EXTERN PetscErrorCode VecDuplicateVecs_Default(Vec,PetscInt,Vec *[]);
214: PETSC_EXTERN PetscErrorCode VecDestroyVecs_Default(PetscInt,Vec []);
215: PETSC_INTERN PetscErrorCode VecLoad_Binary(Vec, PetscViewer);
216: PETSC_EXTERN PetscErrorCode VecLoad_Default(Vec, PetscViewer);

218: PETSC_EXTERN PetscInt  NormIds[7];  /* map from NormType to IDs used to cache/retreive values of norms */

220: PETSC_INTERN PetscErrorCode VecStashCreate_Private(MPI_Comm,PetscInt,VecStash*);
221: PETSC_INTERN PetscErrorCode VecStashDestroy_Private(VecStash*);
222: PETSC_EXTERN PetscErrorCode VecStashExpand_Private(VecStash*,PetscInt);
223: PETSC_INTERN PetscErrorCode VecStashScatterEnd_Private(VecStash*);
224: PETSC_INTERN PetscErrorCode VecStashSetInitialSize_Private(VecStash*,PetscInt);
225: PETSC_INTERN PetscErrorCode VecStashGetInfo_Private(VecStash*,PetscInt*,PetscInt*);
226: PETSC_INTERN PetscErrorCode VecStashScatterBegin_Private(VecStash*,PetscInt*);
227: PETSC_INTERN PetscErrorCode VecStashScatterGetMesg_Private(VecStash*,PetscMPIInt*,PetscInt**,PetscScalar**,PetscInt*);
228: PETSC_INTERN PetscErrorCode VecStashSortCompress_Private(VecStash*);
229: PETSC_INTERN PetscErrorCode VecStashGetOwnerList_Private(VecStash*,PetscLayout,PetscMPIInt*,PetscMPIInt**);

231: /*
232:   VecStashValue_Private - inserts a single value into the stash.

234:   Input Parameters:
235:   stash  - the stash
236:   idx    - the global of the inserted value
237:   values - the value inserted
238: */
239: PETSC_STATIC_INLINE PetscErrorCode VecStashValue_Private(VecStash *stash,PetscInt row,PetscScalar value)
240: {
242:   /* Check and see if we have sufficient memory */
243:   if (((stash)->n + 1) > (stash)->nmax) {
244:     VecStashExpand_Private(stash,1);
245:   }
246:   (stash)->idx[(stash)->n]   = row;
247:   (stash)->array[(stash)->n] = value;
248:   (stash)->n++;
249:   return 0;
250: }

252: /*
253:   VecStashValuesBlocked_Private - inserts 1 block of values into the stash.

255:   Input Parameters:
256:   stash  - the stash
257:   idx    - the global block index
258:   values - the values inserted
259: */
260: PETSC_STATIC_INLINE PetscErrorCode VecStashValuesBlocked_Private(VecStash *stash,PetscInt row,PetscScalar *values)
261: {
262:   PetscInt       jj,stash_bs=(stash)->bs;
263:   PetscScalar    *array;
265:   if (((stash)->n+1) > (stash)->nmax) {
266:     VecStashExpand_Private(stash,1);
267:   }
268:   array = (stash)->array + stash_bs*(stash)->n;
269:   (stash)->idx[(stash)->n]   = row;
270:   for (jj=0; jj<stash_bs; jj++) { array[jj] = values[jj];}
271:   (stash)->n++;
272:   return 0;
273: }

275: PETSC_INTERN PetscErrorCode VecStrideGather_Default(Vec,PetscInt,Vec,InsertMode);
276: PETSC_INTERN PetscErrorCode VecStrideScatter_Default(Vec,PetscInt,Vec,InsertMode);
277: PETSC_INTERN PetscErrorCode VecReciprocal_Default(Vec);
278: PETSC_INTERN PetscErrorCode VecStrideSubSetGather_Default(Vec,PetscInt,const PetscInt[],const PetscInt[],Vec,InsertMode);
279: PETSC_INTERN PetscErrorCode VecStrideSubSetScatter_Default(Vec,PetscInt,const PetscInt[],const PetscInt[],Vec,InsertMode);

281: #if defined(PETSC_HAVE_MATLAB_ENGINE)
282: PETSC_EXTERN PetscErrorCode VecMatlabEnginePut_Default(PetscObject,void*);
283: PETSC_EXTERN PetscErrorCode VecMatlabEngineGet_Default(PetscObject,void*);
284: #endif

286: PETSC_EXTERN PetscErrorCode PetscSectionGetField_Internal(PetscSection, PetscSection, Vec, PetscInt, PetscInt, PetscInt, IS *, Vec *);
287: PETSC_EXTERN PetscErrorCode PetscSectionRestoreField_Internal(PetscSection, PetscSection, Vec, PetscInt, PetscInt, PetscInt, IS *, Vec *);

289: #define VecCheckSameLocalSize(x,ar1,y,ar2)                                 \
290:   if ((x)->map->n != (y)->map->n) SETERRQ4(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Incompatible vector local lengths parameter # %d local size %D != parameter # %d local size %D", ar1,(x)->map->n, ar2,(y)->map->n);

292: #define VecCheckSameSize(x,ar1,y,ar2)                                      \
293:   if ((x)->map->N != (y)->map->N) SETERRQ4(PetscObjectComm((PetscObject)x),PETSC_ERR_ARG_INCOMP,"Incompatible vector global lengths parameter # %d global size %D != paramter # %d global size %D", ar1,(x)->map->N, ar2,(y)->map->N);\
294:   VecCheckSameLocalSize(x,ar1,y,ar2);
295: 
296: #define VecCheckLocalSize(x,ar1,n)                                         \
297:   if ((x)->map->n != n) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Incorrect vector local size: parameter # %d local size %D != %D",ar1,(x)->map->n,n);
298: 
299: #define VecCheckSize(x,ar1,n,N)                                            \
300:   if ((x)->map->N != N) SETERRQ(PetscObjectComm((PetscObject)x),PETSC_ERR_ARG_INCOMP,"Incorrect vector global size: parameter # %d global size %D != %D",ar1,(x)->map->N, N);\
301:   VecCheckLocalSize(x,ar1,n);

303: typedef struct _VecTaggerOps *VecTaggerOps;
304: struct _VecTaggerOps {
305:   PetscErrorCode (*create) (VecTagger);
306:   PetscErrorCode (*destroy) (VecTagger);
307:   PetscErrorCode (*setfromoptions) (PetscOptionItems*,VecTagger);
308:   PetscErrorCode (*setup) (VecTagger);
309:   PetscErrorCode (*view) (VecTagger,PetscViewer);
310:   PetscErrorCode (*computeboxes) (VecTagger,Vec,PetscInt *,VecTaggerBox **);
311:   PetscErrorCode (*computeis) (VecTagger,Vec,IS *);
312: };
313: struct _p_VecTagger {
314:   PETSCHEADER(struct _VecTaggerOps);
315:   void      *data;
316:   PetscInt  blocksize;
317:   PetscBool invert;
318:   PetscBool setupcalled;
319: };

321: PETSC_EXTERN PetscBool      VecTaggerRegisterAllCalled;
322: PETSC_EXTERN PetscErrorCode VecTaggerRegisterAll(void);
323: PETSC_EXTERN PetscErrorCode VecTaggerComputeIS_FromBoxes(VecTagger,Vec,IS*);
324: PETSC_EXTERN PetscMPIInt Petsc_Reduction_keyval;

326: #endif