Actual source code: sbaijfact4.c

petsc-3.11.3 2019-06-26
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  2:  #include <../src/mat/impls/sbaij/seq/sbaij.h>
  3:  #include <petsc/private/kernels/blockinvert.h>

  5: /*
  6:       Version for when blocks are 3 by 3 Using natural ordering
  7: */
  8: PetscErrorCode MatCholeskyFactorNumeric_SeqSBAIJ_3_NaturalOrdering(Mat C,Mat A,const MatFactorInfo *info)
  9: {
 10:   Mat_SeqSBAIJ   *a = (Mat_SeqSBAIJ*)A->data,*b = (Mat_SeqSBAIJ*)C->data;
 12:   PetscInt       i,j,mbs=a->mbs,*bi=b->i,*bj=b->j;
 13:   PetscInt       *ai,*aj,k,k1,jmin,jmax,*jl,*il,vj,nexti,ili;
 14:   MatScalar      *ba = b->a,*aa,*ap,*dk,*uik;
 15:   MatScalar      *u,*diag,*rtmp,*rtmp_ptr;
 16:   PetscReal      shift = info->shiftamount;
 17:   PetscBool      allowzeropivot,zeropivotdetected;

 20:   /* initialization */
 21:   allowzeropivot = PetscNot(A->erroriffailure);
 22:   PetscCalloc1(9*mbs,&rtmp);
 23:   PetscMalloc2(mbs,&il,mbs,&jl);
 24:   il[0] = 0;
 25:   for (i=0; i<mbs; i++) jl[i] = mbs;
 26: 
 27:   PetscMalloc2(9,&dk,9,&uik);
 28:   ai   = a->i; aj = a->j; aa = a->a;

 30:   /* for each row k */
 31:   for (k = 0; k<mbs; k++) {

 33:     /*initialize k-th row with elements nonzero in row k of A */
 34:     jmin = ai[k]; jmax = ai[k+1];
 35:     if (jmin < jmax) {
 36:       ap = aa + jmin*9;
 37:       for (j = jmin; j < jmax; j++) {
 38:         vj       = aj[j];   /* block col. index */
 39:         rtmp_ptr = rtmp + vj*9;
 40:         for (i=0; i<9; i++) *rtmp_ptr++ = *ap++;
 41:       }
 42:     }

 44:     /* modify k-th row by adding in those rows i with U(i,k) != 0 */
 45:     PetscMemcpy(dk,rtmp+k*9,9*sizeof(MatScalar));
 46:     i    = jl[k]; /* first row to be added to k_th row  */

 48:     while (i < mbs) {
 49:       nexti = jl[i]; /* next row to be added to k_th row */

 51:       /* compute multiplier */
 52:       ili = il[i];  /* index of first nonzero element in U(i,k:bms-1) */

 54:       /* uik = -inv(Di)*U_bar(i,k) */
 55:       diag = ba + i*9;
 56:       u    = ba + ili*9;

 58:       uik[0] = -(diag[0]*u[0] + diag[3]*u[1] + diag[6]*u[2]);
 59:       uik[1] = -(diag[1]*u[0] + diag[4]*u[1] + diag[7]*u[2]);
 60:       uik[2] = -(diag[2]*u[0] + diag[5]*u[1] + diag[8]*u[2]);

 62:       uik[3] = -(diag[0]*u[3] + diag[3]*u[4] + diag[6]*u[5]);
 63:       uik[4] = -(diag[1]*u[3] + diag[4]*u[4] + diag[7]*u[5]);
 64:       uik[5] = -(diag[2]*u[3] + diag[5]*u[4] + diag[8]*u[5]);

 66:       uik[6] = -(diag[0]*u[6] + diag[3]*u[7] + diag[6]*u[8]);
 67:       uik[7] = -(diag[1]*u[6] + diag[4]*u[7] + diag[7]*u[8]);
 68:       uik[8] = -(diag[2]*u[6] + diag[5]*u[7] + diag[8]*u[8]);

 70:       /* update D(k) += -U(i,k)^T * U_bar(i,k) */
 71:       dk[0] += uik[0]*u[0] + uik[1]*u[1] + uik[2]*u[2];
 72:       dk[1] += uik[3]*u[0] + uik[4]*u[1] + uik[5]*u[2];
 73:       dk[2] += uik[6]*u[0] + uik[7]*u[1] + uik[8]*u[2];

 75:       dk[3] += uik[0]*u[3] + uik[1]*u[4] + uik[2]*u[5];
 76:       dk[4] += uik[3]*u[3] + uik[4]*u[4] + uik[5]*u[5];
 77:       dk[5] += uik[6]*u[3] + uik[7]*u[4] + uik[8]*u[5];

 79:       dk[6] += uik[0]*u[6] + uik[1]*u[7] + uik[2]*u[8];
 80:       dk[7] += uik[3]*u[6] + uik[4]*u[7] + uik[5]*u[8];
 81:       dk[8] += uik[6]*u[6] + uik[7]*u[7] + uik[8]*u[8];

 83:       PetscLogFlops(27.0*4.0);

 85:       /* update -U(i,k) */
 86:       PetscMemcpy(ba+ili*9,uik,9*sizeof(MatScalar));

 88:       /* add multiple of row i to k-th row ... */
 89:       jmin = ili + 1; jmax = bi[i+1];
 90:       if (jmin < jmax) {
 91:         for (j=jmin; j<jmax; j++) {
 92:           /* rtmp += -U(i,k)^T * U_bar(i,j) */
 93:           rtmp_ptr     = rtmp + bj[j]*9;
 94:           u            = ba + j*9;
 95:           rtmp_ptr[0] += uik[0]*u[0] + uik[1]*u[1] + uik[2]*u[2];
 96:           rtmp_ptr[1] += uik[3]*u[0] + uik[4]*u[1] + uik[5]*u[2];
 97:           rtmp_ptr[2] += uik[6]*u[0] + uik[7]*u[1] + uik[8]*u[2];

 99:           rtmp_ptr[3] += uik[0]*u[3] + uik[1]*u[4] + uik[2]*u[5];
100:           rtmp_ptr[4] += uik[3]*u[3] + uik[4]*u[4] + uik[5]*u[5];
101:           rtmp_ptr[5] += uik[6]*u[3] + uik[7]*u[4] + uik[8]*u[5];

103:           rtmp_ptr[6] += uik[0]*u[6] + uik[1]*u[7] + uik[2]*u[8];
104:           rtmp_ptr[7] += uik[3]*u[6] + uik[4]*u[7] + uik[5]*u[8];
105:           rtmp_ptr[8] += uik[6]*u[6] + uik[7]*u[7] + uik[8]*u[8];
106:         }
107:         PetscLogFlops(2.0*27.0*(jmax-jmin));

109:         /* ... add i to row list for next nonzero entry */
110:         il[i] = jmin;             /* update il(i) in column k+1, ... mbs-1 */
111:         j     = bj[jmin];
112:         jl[i] = jl[j]; jl[j] = i; /* update jl */
113:       }
114:       i = nexti;
115:     }

117:     /* save nonzero entries in k-th row of U ... */

119:     /* invert diagonal block */
120:     diag = ba+k*9;
121:     PetscMemcpy(diag,dk,9*sizeof(MatScalar));
122:     PetscKernel_A_gets_inverse_A_3(diag,shift,allowzeropivot,&zeropivotdetected);
123:     if (zeropivotdetected) C->factorerrortype = MAT_FACTOR_NUMERIC_ZEROPIVOT;

125:     jmin = bi[k]; jmax = bi[k+1];
126:     if (jmin < jmax) {
127:       for (j=jmin; j<jmax; j++) {
128:         vj       = bj[j];      /* block col. index of U */
129:         u        = ba + j*9;
130:         rtmp_ptr = rtmp + vj*9;
131:         for (k1=0; k1<9; k1++) {
132:           *u++        = *rtmp_ptr;
133:           *rtmp_ptr++ = 0.0;
134:         }
135:       }

137:       /* ... add k to row list for first nonzero entry in k-th row */
138:       il[k] = jmin;
139:       i     = bj[jmin];
140:       jl[k] = jl[i]; jl[i] = k;
141:     }
142:   }

144:   PetscFree(rtmp);
145:   PetscFree2(il,jl);
146:   PetscFree2(dk,uik);

148:   C->ops->solve          = MatSolve_SeqSBAIJ_3_NaturalOrdering_inplace;
149:   C->ops->solvetranspose = MatSolve_SeqSBAIJ_3_NaturalOrdering_inplace;
150:   C->ops->forwardsolve   = MatForwardSolve_SeqSBAIJ_3_NaturalOrdering_inplace;
151:   C->ops->backwardsolve  = MatBackwardSolve_SeqSBAIJ_3_NaturalOrdering_inplace;

153:   C->assembled    = PETSC_TRUE;
154:   C->preallocated = PETSC_TRUE;

156:   PetscLogFlops(1.3333*27*b->mbs); /* from inverting diagonal blocks */
157:   return(0);
158: }