petsc-master 2020-09-24
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PetscSFSetGraphWithPattern

Sets the graph of an SF with a specific pattern

Synopsis

#include "petscsf.h" 
PetscErrorCode PetscSFSetGraphWithPattern(PetscSF sf,PetscLayout map,PetscSFPattern pattern)
Collective

Input Parameters

sf - The PetscSF
map - Layout of roots over all processes (insignificant when pattern is PETSCSF_PATTERN_ALLTOALL)
pattern - One of PETSCSF_PATTERN_ALLGATHER, PETSCSF_PATTERN_GATHER, PETSCSF_PATTERN_ALLTOALL

Notes

It is easier to explain PetscSFPattern using vectors. Suppose we have an MPI vector x and its layout is map. n and N are local and global sizes of x respectively.

With PETSCSF_PATTERN_ALLGATHER, the routine creates a graph that if one does Bcast on it, it will copy x to sequential vectors y on all ranks.

With PETSCSF_PATTERN_GATHER, the routine creates a graph that if one does Bcast on it, it will copy x to a sequential vector y on rank 0.

In above cases, entries of x are roots and entries of y are leaves.

With PETSCSF_PATTERN_ALLTOALL, map is insignificant. Suppose NP is size of sf's communicator. The routine creates a graph that every rank has NP leaves and NP roots. On rank i, its leaf j is connected to root i of rank j. Here 0 <=i,j<NP. It is a kind of MPI_Alltoall with sendcount/recvcount being 1. Note that it does not mean one can not send multiple items. One just needs to create a new MPI datatype for the mulptiple data items with MPI_Type_contiguous() and use that as the <unit> argument in SF routines.

In this case, roots and leaves are symmetric.

Level

intermediate

Location

src/vec/is/sf/interface/sf.c
Index of all PetscSF routines
Table of Contents for all manual pages
Index of all manual pages