Actual source code: petscsf.h

petsc-master 2019-08-18
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  1: /*
  2:    A star forest (SF) describes a communication pattern
  3: */
  4: #if !defined(PETSCSF_H)
  5: #define PETSCSF_H
  6:  #include <petscsys.h>
  7:  #include <petscis.h>
  8:  #include <petscsftypes.h>

 10: PETSC_EXTERN PetscClassId PETSCSF_CLASSID;

 12: /*J
 13:     PetscSFType - String with the name of a PetscSF type

 15:    Level: beginner

 17: .seealso: PetscSFSetType(), PetscSF
 18: J*/
 19: typedef const char *PetscSFType;
 20: #define PETSCSFBASIC      "basic"
 21: #define PETSCSFNEIGHBOR   "neighbor"
 22: #define PETSCSFALLGATHERV "allgatherv"
 23: #define PETSCSFALLGATHER  "allgather"
 24: #define PETSCSFGATHERV    "gatherv"
 25: #define PETSCSFGATHER     "gather"
 26: #define PETSCSFALLTOALL   "alltoall"
 27: #define PETSCSFWINDOW     "window"

 29: /*E
 30:    PetscSFPattern - Pattern of the PetscSF graph

 32: $  PETSCSF_PATTERN_GENERAL   - A general graph. One sets the graph with PetscSFSetGraph() and usually does not use this enum directly.
 33: $  PETSCSF_PATTERN_ALLGATHER - A graph that every rank gathers all roots from all ranks (like MPI_Allgather/v). One sets the graph with PetscSFSetGraphWithPattern().
 34: $  PETSCSF_PATTERN_GATHER    - A graph that rank 0 gathers all roots from all ranks (like MPI_Gather/v with root=0). One sets the graph with PetscSFSetGraphWithPattern().
 35: $  PETSCSF_PATTERN_ALLTOALL  - A graph that every rank gathers different roots from all ranks (like MPI_Alltoall). One sets the graph with PetscSFSetGraphWithPattern().
 36:                                In an ALLTOALL graph, we assume each process has <size> leaves and <size> roots, with each leaf connecting to a remote root. Here <size> is
 37:                                the size of the communicator. This does not mean one can not communicate multiple data items between a pair of processes. One just needs to
 38:                                create a new MPI datatype for the multiple data items, e.g., by MPI_Type_contiguous.
 39:    Level: beginner

 41: .seealso: PetscSFSetGraph(), PetscSFSetGraphWithPattern()
 42: E*/
 43: typedef enum {PETSCSF_PATTERN_GENERAL=0,PETSCSF_PATTERN_ALLGATHER,PETSCSF_PATTERN_GATHER,PETSCSF_PATTERN_ALLTOALL} PetscSFPattern;

 45: /*E
 46:     PetscSFWindowSyncType - Type of synchronization for PETSCSFWINDOW

 48: $  PETSCSF_WINDOW_SYNC_FENCE - simplest model, synchronizing across communicator
 49: $  PETSCSF_WINDOW_SYNC_LOCK - passive model, less synchronous, requires less setup than PETSCSF_WINDOW_SYNC_ACTIVE, but may require more handshakes
 50: $  PETSCSF_WINDOW_SYNC_ACTIVE - active model, provides most information to MPI implementation, needs to construct 2-way process groups (more setup than PETSCSF_WINDOW_SYNC_LOCK)

 52:    Level: advanced

 54: .seealso: PetscSFWindowSetSyncType(), PetscSFWindowGetSyncType()
 55: E*/
 56: typedef enum {PETSCSF_WINDOW_SYNC_FENCE,PETSCSF_WINDOW_SYNC_LOCK,PETSCSF_WINDOW_SYNC_ACTIVE} PetscSFWindowSyncType;
 57: PETSC_EXTERN const char *const PetscSFWindowSyncTypes[];

 59: /*E
 60:     PetscSFDuplicateOption - Aspects to preserve when duplicating a PetscSF

 62: $  PETSCSF_DUPLICATE_CONFONLY - configuration only, user must call PetscSFSetGraph()
 63: $  PETSCSF_DUPLICATE_RANKS - communication ranks preserved, but different graph (allows simpler setup after calling PetscSFSetGraph())
 64: $  PETSCSF_DUPLICATE_GRAPH - entire graph duplicated

 66:    Level: beginner

 68: .seealso: PetscSFDuplicate()
 69: E*/
 70: typedef enum {PETSCSF_DUPLICATE_CONFONLY,PETSCSF_DUPLICATE_RANKS,PETSCSF_DUPLICATE_GRAPH} PetscSFDuplicateOption;
 71: PETSC_EXTERN const char *const PetscSFDuplicateOptions[];

 73: PETSC_EXTERN PetscFunctionList PetscSFList;
 74: PETSC_EXTERN PetscErrorCode PetscSFRegister(const char[],PetscErrorCode (*)(PetscSF));

 76: PETSC_EXTERN PetscErrorCode PetscSFInitializePackage(void);
 77: PETSC_EXTERN PetscErrorCode PetscSFFinalizePackage(void);
 78: PETSC_EXTERN PetscErrorCode PetscSFCreate(MPI_Comm,PetscSF*);
 79: PETSC_EXTERN PetscErrorCode PetscSFDestroy(PetscSF*);
 80: PETSC_EXTERN PetscErrorCode PetscSFSetType(PetscSF,PetscSFType);
 81: PETSC_EXTERN PetscErrorCode PetscSFGetType(PetscSF,PetscSFType*);
 82: PETSC_EXTERN PetscErrorCode PetscSFView(PetscSF,PetscViewer);
 83: PETSC_STATIC_INLINE PetscErrorCode PetscSFViewFromOptions(PetscSF A,PetscObject obj,const char name[]) {return PetscObjectViewFromOptions((PetscObject)A,obj,name);}
 84: PETSC_EXTERN PetscErrorCode PetscSFSetUp(PetscSF);
 85: PETSC_EXTERN PetscErrorCode PetscSFSetFromOptions(PetscSF);
 86: PETSC_EXTERN PetscErrorCode PetscSFDuplicate(PetscSF,PetscSFDuplicateOption,PetscSF*);
 87: PETSC_EXTERN PetscErrorCode PetscSFWindowSetSyncType(PetscSF,PetscSFWindowSyncType);
 88: PETSC_EXTERN PetscErrorCode PetscSFWindowGetSyncType(PetscSF,PetscSFWindowSyncType*);
 89: PETSC_EXTERN PetscErrorCode PetscSFSetRankOrder(PetscSF,PetscBool);
 90: PETSC_EXTERN PetscErrorCode PetscSFSetGraph(PetscSF,PetscInt,PetscInt,const PetscInt*,PetscCopyMode,const PetscSFNode*,PetscCopyMode);
 91: PETSC_EXTERN PetscErrorCode PetscSFSetGraphWithPattern(PetscSF,PetscLayout,PetscSFPattern);
 92: PETSC_EXTERN PetscErrorCode PetscSFGetGraph(PetscSF,PetscInt*,PetscInt*,const PetscInt**,const PetscSFNode**);
 93: PETSC_EXTERN PetscErrorCode PetscSFGetLeafRange(PetscSF,PetscInt*,PetscInt*);
 94: PETSC_EXTERN PetscErrorCode PetscSFCreateEmbeddedSF(PetscSF,PetscInt,const PetscInt*,PetscSF*);
 95: PETSC_EXTERN PetscErrorCode PetscSFCreateEmbeddedLeafSF(PetscSF,PetscInt,const PetscInt *, PetscSF *);
 96: PETSC_EXTERN PetscErrorCode PetscSFReset(PetscSF);
 97: PETSC_EXTERN PetscErrorCode PetscSFSetUpRanks(PetscSF,MPI_Group);
 98: PETSC_EXTERN PetscErrorCode PetscSFGetRootRanks(PetscSF,PetscInt*,const PetscMPIInt**,const PetscInt**,const PetscInt**,const PetscInt**);
 99: PETSC_EXTERN PetscErrorCode PetscSFGetLeafRanks(PetscSF,PetscInt*,const PetscMPIInt**,const PetscInt**,const PetscInt**);
100: PETSC_EXTERN PetscErrorCode PetscSFGetGroups(PetscSF,MPI_Group*,MPI_Group*);
101: PETSC_EXTERN PetscErrorCode PetscSFGetMultiSF(PetscSF,PetscSF*);
102: PETSC_EXTERN PetscErrorCode PetscSFCreateInverseSF(PetscSF,PetscSF*);

104: /* Reduce rootdata to leafdata using provided operation */
105: PETSC_EXTERN PetscErrorCode PetscSFBcastAndOpBegin(PetscSF,MPI_Datatype,const void*,void*,MPI_Op)
106:   PetscAttrMPIPointerWithType(3,2) PetscAttrMPIPointerWithType(4,2);
107: PETSC_EXTERN PetscErrorCode PetscSFBcastAndOpEnd(PetscSF,MPI_Datatype,const void*,void*,MPI_Op)
108:   PetscAttrMPIPointerWithType(3,2) PetscAttrMPIPointerWithType(4,2);
109: /* Reduce leafdata into rootdata using provided operation */
110: PETSC_EXTERN PetscErrorCode PetscSFReduceBegin(PetscSF,MPI_Datatype,const void*,void *,MPI_Op)
111:   PetscAttrMPIPointerWithType(3,2) PetscAttrMPIPointerWithType(4,2);
112: PETSC_EXTERN PetscErrorCode PetscSFReduceEnd(PetscSF,MPI_Datatype,const void*,void*,MPI_Op)
113:   PetscAttrMPIPointerWithType(3,2) PetscAttrMPIPointerWithType(4,2);
114: /* Atomically modifies (using provided operation) rootdata using leafdata from each leaf, value at root at time of modification is returned in leafupdate. */
115: PETSC_EXTERN PetscErrorCode PetscSFFetchAndOpBegin(PetscSF,MPI_Datatype,void*,const void*,void*,MPI_Op)
116:   PetscAttrMPIPointerWithType(3,2) PetscAttrMPIPointerWithType(4,2) PetscAttrMPIPointerWithType(5,2);
117: PETSC_EXTERN PetscErrorCode PetscSFFetchAndOpEnd(PetscSF,MPI_Datatype,void*,const void*,void*,MPI_Op)
118:   PetscAttrMPIPointerWithType(3,2) PetscAttrMPIPointerWithType(4,2) PetscAttrMPIPointerWithType(5,2);
119: /* Compute the degree of every root vertex (number of leaves in its star) */
120: PETSC_EXTERN PetscErrorCode PetscSFComputeDegreeBegin(PetscSF,const PetscInt**);
121: PETSC_EXTERN PetscErrorCode PetscSFComputeDegreeEnd(PetscSF,const PetscInt**);
122: PETSC_EXTERN PetscErrorCode PetscSFComputeMultiRootOriginalNumbering(PetscSF,const PetscInt[],PetscInt*,PetscInt*[]);
123: /* Concatenate data from all leaves into roots */
124: PETSC_EXTERN PetscErrorCode PetscSFGatherBegin(PetscSF,MPI_Datatype,const void*,void*)
125:   PetscAttrMPIPointerWithType(3,2) PetscAttrMPIPointerWithType(4,2);
126: PETSC_EXTERN PetscErrorCode PetscSFGatherEnd(PetscSF,MPI_Datatype,const void*,void*)
127:   PetscAttrMPIPointerWithType(3,2) PetscAttrMPIPointerWithType(4,2);
128: /* Distribute distinct values to each leaf from roots */
129: PETSC_EXTERN PetscErrorCode PetscSFScatterBegin(PetscSF,MPI_Datatype,const void*,void*)
130:   PetscAttrMPIPointerWithType(3,2) PetscAttrMPIPointerWithType(4,2);
131: PETSC_EXTERN PetscErrorCode PetscSFScatterEnd(PetscSF,MPI_Datatype,const void*,void*)
132:   PetscAttrMPIPointerWithType(3,2) PetscAttrMPIPointerWithType(4,2);

134: PETSC_EXTERN PetscErrorCode PetscSFCompose(PetscSF,PetscSF,PetscSF*);
135: PETSC_EXTERN PetscErrorCode PetscSFComposeInverse(PetscSF,PetscSF,PetscSF*);

137: #if defined(MPI_REPLACE)
138: #  define MPIU_REPLACE MPI_REPLACE
139: #else
140: /* When using an old MPI such that MPI_REPLACE is not defined, we do not pass MPI_REPLACE to MPI at all.  Instead, we
141:  * use it as a flag for our own reducer in the PETSCSFBASIC implementation.  This could be any unique value unlikely to
142:  * collide with another MPI_Op so we'll just use the value that has been used by every version of MPICH since
143:  * MPICH2-1.0.6. */
144: #  define MPIU_REPLACE (MPI_Op)(0x5800000d)
145: #endif

147: PETSC_DEPRECATED_FUNCTION("Use PetscSFGetRootRanks (since v3.12)")
148: PETSC_STATIC_INLINE PetscErrorCode PetscSFGetRanks(PetscSF sf,PetscInt *nranks,const PetscMPIInt **ranks,const PetscInt **roffset,const PetscInt **rmine,const PetscInt **rremote) {
149:   return PetscSFGetRootRanks(sf,nranks,ranks,roffset,rmine,rremote);
150: }

152: PETSC_STATIC_INLINE PetscErrorCode PetscSFBcastBegin(PetscSF sf,MPI_Datatype unit,const void* rootdata,void* leafdata) {
153:   return PetscSFBcastAndOpBegin(sf,unit,rootdata,leafdata,MPIU_REPLACE);
154: }
155: PETSC_STATIC_INLINE PetscErrorCode PetscSFBcastEnd(PetscSF sf,MPI_Datatype unit,const void* rootdata,void* leafdata) {
156:   return PetscSFBcastAndOpEnd(sf,unit,rootdata,leafdata,MPIU_REPLACE);
157: }

159: #endif