petsc-3.4.5 2014-06-29

PetscHMPIMerge

 Initializes the PETSc and MPI to work with HMPI. This is not usually called by the user. One should use -hmpi_merge_size <n> to indicate the node size of merged communicator to be.

Synopsis

#include "petscsys.h"   
PetscErrorCode  PetscHMPIMerge(PetscMPIInt nodesize,PetscErrorCode (*func)(void*),void *ctx)
Collective on MPI_COMM_WORLD or PETSC_COMM_WORLD if it has been set

Input Parameter

nodesize - size of each compute node that will share processors
func - optional function to call on the master nodes
ctx - context passed to function on master nodes

Options Database

-hmpi_merge_size <n> - 

   Comparison of two approaches for HMPI usage (MPI started with N processes)



   -hmpi_spawn_size <n> requires MPI 2, results in n*N total processes with N directly used by application code



                                          and n-1 worker processes (used by PETSc) for each application node.



                          You MUST launch MPI so that only ONE MPI process is created for each hardware node.





   -hmpi_merge_size <n> results in N total processes, N/n used by the application code and the rest worker processes



                           (used by PETSc)



                          You MUST launch MPI so that n MPI processes are created for each hardware node.





   petscmpiexec -n 2 ./ex1 -hmpi_spawn_size 3 gives 2 application nodes (and 4 PETSc worker nodes)



   petscmpiexec -n 6 ./ex1 -hmpi_merge_size 3 gives the SAME 2 application nodes and 4 PETSc worker nodes



      This is what would use if each of the computers hardware nodes had 3 CPUs.





     These are intended to be used in conjunction with USER HMPI code. The user will have 1 process per



  computer (hardware) node (where the computer node has p cpus), the user's code will use threads to fully



  utilize all the CPUs on the node. The PETSc code will have p processes to fully use the compute node for



  PETSc calculations. The user THREADS and PETSc PROCESSES will NEVER run at the same time so the p CPUs



  are always working on p task, never more than p.





   See PCHMPI for a PETSc preconditioner that can use this functionality






For both PetscHMPISpawn() and PetscHMPIMerge() PETSC_COMM_WORLD consists of one process per "node", PETSC_COMM_LOCAL_WORLD
consists of all the processes in a "node."


In both cases the user's code is running ONLY on PETSC_COMM_WORLD (that was newly generated by running this command).





See Also

PetscFinalize(), PetscInitializeFortran(), PetscGetArgs(), PetscHMPIFinalize(), PetscInitialize(), PetscHMPISpawn(), PetscHMPIRun()





Level:developer

Location:src/sys/objects/mpinit.c

Index of all Sys routines

Table of Contents for all manual pages

Index of all manual pages