Sparse tag variable-length data. More...

#include <VarLenSparseTag.hpp>

Inheritance diagram for moab::VarLenSparseTag:

Public Types
typedef std::map< EntityHandle, VarLenTag >	MapType
	map of entity id and tag data
Public Member Functions
	VarLenSparseTag (const char name, DataType type, const void default_value, int default_value_bytes)
	~VarLenSparseTag ()
virtual TagType	get_storage_type () const
virtual ErrorCode	release_all_data (SequenceManager seqman, Error error_handler, bool delete_pending)
	Remove/clear tag data for all entities.
virtual ErrorCode	get_data (const SequenceManager seqman, Error error_handler, const EntityHandle entities, size_t num_entities, void data) const
	Get tag value for passed entities.
virtual ErrorCode	get_data (const SequenceManager seqman, Error error_handler, const Range &entities, void *data) const
	Get tag value for passed entities.
virtual ErrorCode	get_data (const SequenceManager seqman, Error error_handler, const EntityHandle entities, size_t num_entities, const void data_ptrs, int data_lengths) const
	Get tag value for passed entities.
virtual ErrorCode	get_data (const SequenceManager seqman, Error error_handler, const Range &entities, const void *data_ptrs, int data_lengths) const
	Get tag value for passed entities.
virtual ErrorCode	set_data (SequenceManager seqman, Error error_handler, const EntityHandle entities, size_t num_entities, const void data)
	Set tag value for passed entities.
virtual ErrorCode	set_data (SequenceManager seqman, Error error_handler, const Range &entities, const void *data)
	Set tag value for passed entities.
virtual ErrorCode	set_data (SequenceManager seqman, Error error_handler, const EntityHandle entities, size_t num_entities, void const const data_ptrs, const int data_lengths)
	Set tag value for passed entities.
virtual ErrorCode	set_data (SequenceManager seqman, Error error_handler, const Range &entities, void const const data_ptrs, const int *data_lengths)
	Set tag value for passed entities.
virtual ErrorCode	clear_data (SequenceManager seqman, Error error_handler, const EntityHandle entities, size_t num_entities, const void value_ptr, int value_len=0)
	Set tag value for passed entities.
virtual ErrorCode	clear_data (SequenceManager seqman, Error error_handler, const Range &entities, const void *value_ptr, int value_len=0)
	Set tag value for passed entities.
virtual ErrorCode	remove_data (SequenceManager seqman, Error error_handler, const EntityHandle *entities, size_t num_entities)
	Remove/clear tag data for entities.
virtual ErrorCode	remove_data (SequenceManager seqman, Error error_handler, const Range &entities)
	Remove/clear tag data for entities.
virtual ErrorCode	tag_iterate (SequenceManager seqman, Error error_handler, Range::iterator &iter, const Range::iterator &end, void *&data_ptr, bool allocate=true)
	Access tag data via direct pointer into contiguous blocks.
virtual ErrorCode	get_tagged_entities (const SequenceManager seqman, Range &output_entities, EntityType type=MBMAXTYPE, const Range intersect=0) const
	Get all tagged entities.
virtual ErrorCode	num_tagged_entities (const SequenceManager seqman, size_t &output_count, EntityType type=MBMAXTYPE, const Range intersect=0) const
	Count all tagged entities.
virtual ErrorCode	find_entities_with_value (const SequenceManager seqman, Error error_handler, Range &output_entities, const void value, int value_bytes=0, EntityType type=MBMAXTYPE, const Range intersect_entities=0) const
	Get all tagged entities with tag value.
virtual bool	is_tagged (const SequenceManager *, EntityHandle h) const
	Check if entity is tagged.
virtual ErrorCode	get_memory_use (const SequenceManager *seqman, unsigned long &total, unsigned long &per_entity) const
	Get memory use for tag data.
unsigned long	get_number_entities ()
	get number of entities
Private Member Functions
	VarLenSparseTag (const VarLenSparseTag &)
VarLenSparseTag &	operator= (const VarLenSparseTag &)
ErrorCode	get_data_ptr (Error error_handler, EntityHandle entity_handle, const void &data, int &size) const
	get the variable-length data for an entity id
Private Attributes
MapType	mData

Detailed Description

Sparse tag variable-length data.

Definition at line 45 of file VarLenSparseTag.hpp.

Member Typedef Documentation

typedef std::map<EntityHandle,VarLenTag> moab::VarLenSparseTag::MapType

map of entity id and tag data

Definition at line 400 of file VarLenSparseTag.hpp.

Constructor & Destructor Documentation

moab::VarLenSparseTag::VarLenSparseTag	(	const char *	name,
		DataType	type,
		const void *	default_value,
		int	default_value_bytes
	)

Definition at line 48 of file VarLenSparseTag.cpp.

  : TagInfo( name, MB_VARIABLE_LENGTH, type, default_value, default_value_bytes )
  { }

moab::VarLenSparseTag::~VarLenSparseTag ( )

Definition at line 55 of file VarLenSparseTag.cpp.

  { release_all_data(0,0,true); }

moab::VarLenSparseTag::VarLenSparseTag ( const VarLenSparseTag & ) [private]

Member Function Documentation

ErrorCode moab::VarLenSparseTag::clear_data	(	SequenceManager *	seqman,
		Error *	error_handler,
		const EntityHandle *	entities,
		size_t	num_entities,
		const void *	value_ptr,
		int	value_len = `0`
	)		`[virtual]`

Set tag value for passed entities.

Store tag data or update stored tag values.

Parameters:

seqman	Pointer to mesh entity database
entities	Entity handles for which to store tag data
num_entities	Length of `entities` array
value_ptr	Pointer to a single tag value which is to be stored for each of the passed entities.
value_len	Length of tag value in bytes. Ignored for fixed-length tags. Required for variable- length tags.

Implements moab::TagInfo.

Definition at line 214 of file VarLenSparseTag.cpp.

{
  if (0 == value_len) {
    remove_data( seqman, 0, entities, num_entities );
    return MB_SUCCESS;
  }

  ErrorCode rval = validate_lengths( error, &value_len, 1 );
  if (MB_SUCCESS != rval)
    return rval;

  rval = seqman->check_valid_entities( error, entities, num_entities, true );
  if (MB_SUCCESS != rval)
    return rval;
  
  for (size_t i = 0; i < num_entities; ++i)
    mData[entities[i]].set( value_ptr, value_len );
  return MB_SUCCESS;
}

ErrorCode moab::VarLenSparseTag::clear_data	(	SequenceManager *	seqman,
		Error *	error_handler,
		const Range &	entities,
		const void *	value_ptr,
		int	value_len = `0`
	)		`[virtual]`

Set tag value for passed entities.

Store tag data or update stored tag values.

Parameters:

seqman	Pointer to mesh entity database
entities	Entity handles for which to store tag data
value_ptr	Pointer to a single tag value which is to be stored for each of the passed entities.
value_len	Length of tag value in bytes. Ignored for fixed-length tags. Required for variable- length tags.

Implements moab::TagInfo.

Definition at line 239 of file VarLenSparseTag.cpp.

{
  if (0 == value_len) {
    remove_data( seqman, 0, entities );
    return MB_SUCCESS;
  }

  ErrorCode rval = validate_lengths( error, &value_len, 1 );
  if (MB_SUCCESS != rval)
    return rval;
    
  rval = seqman->check_valid_entities( error, entities );
  if (MB_SUCCESS != rval)
    return rval;
  
  Range::const_iterator i;
  for (i = entities.begin(); i != entities.end(); ++i)
    mData[*i].set( value_ptr, value_len );

  return MB_SUCCESS;
}

ErrorCode moab::VarLenSparseTag::find_entities_with_value	(	const SequenceManager *	seqman,
		Error *	error_handler,
		Range &	output_entities,
		const void *	value,
		int	value_bytes = `0`,
		EntityType	type = `MBMAXTYPE`,
		const Range *	intersect_entities = `0`
	)		const `[virtual]`

Get all tagged entities with tag value.

Get the list of entities which have the specified tag value.

Parameters:

seqman	Pointer to entity storage database
output_entities	Results appended to this range
value	Pointer to tag value
value_bytes	Size of tag value in bytes.
type	Optional entity type. If specified, search is limited to entities of specified type.
intersect_entities	Opotional intersect list. If specified, search is restricted to entities in this list.

Implements moab::TagInfo.

Definition at line 390 of file VarLenSparseTag.cpp.

{
  if (value_bytes && value_bytes != get_size())
    return MB_INVALID_SIZE;
  
  MapType::const_iterator iter, end;
#ifdef HAVE_UNORDERED_MAP
  if (intersect_entities) {
    std::pair<Range::iterator,Range::iterator> r;
    if (type == MBMAXTYPE) {
      r.first = intersect_entities->begin();
      r.second = intersect_entities->end();
    }
    else {
      r = intersect_entities->equal_range( type );
    }
    
    
    find_map_varlen_values_equal( *this, value, get_size(), 
                                  r.first, r.second,
                                  mData, output_entities );
  }
  else if (type == MBMAXTYPE) {
    find_tag_varlen_values_equal( *this, value, get_size(), 
                                  mData.begin(), mData.end(), 
                                  output_entities );
  }
  else {
    Range tmp;
    seqman->get_entities( type, tmp );
    find_map_varlen_values_equal( *this, value, get_size(), 
                                  tmp.begin(), tmp.end(),
                                  mData, output_entities );
  }
#else
  if (intersect_entities) {
    for (Range::const_pair_iterator p = intersect_entities->begin();
         p != intersect_entities->end(); ++p) {
      iter = mData.lower_bound( p->first );
      end = mData.upper_bound( p->second );
      find_tag_varlen_values_equal( *this, value, get_size(), iter, end, 
                                    output_entities);
    }
  }
  else {
    if (type == MBMAXTYPE) {
      iter = mData.begin();
      end = mData.end();
    }
    else {
      iter = mData.lower_bound( CREATE_HANDLE( type, MB_START_ID ) );
      end = mData.upper_bound( CREATE_HANDLE( type, MB_END_ID ) );
    }
    find_tag_varlen_values_equal( *this, value, get_size(), iter, end, 
                                  output_entities);
  }
#endif
  
  return MB_SUCCESS;
}

ErrorCode moab::VarLenSparseTag::get_data	(	const SequenceManager *	seqman,
		Error *	error_handler,
		const EntityHandle *	entities,
		size_t	num_entities,
		void *	data
	)		const `[virtual]`

Get tag value for passed entities.

Get tag values for specified entities.

Will fail for variable-length data.

Parameters:

seqman	Pointer to mesh entity database
entities	Entity handles for which to retrieve tag data
num_entities	Length of `entities` array
data	Pointer to memory in which to store consecutive tag values, one for each passed entity.

Implements moab::TagInfo.

Definition at line 88 of file VarLenSparseTag.cpp.

{
  return not_var_len(error, get_name());
}

ErrorCode moab::VarLenSparseTag::get_data	(	const SequenceManager *	seqman,
		Error *	error_handler,
		const Range &	entities,
		void *	data
	)		const `[virtual]`

Get tag value for passed entities.

Get tag values for specified entities.

Will fail for variable-length data.

Parameters:

seqman	Pointer to mesh entity database
entities	Entity handles for which to retrieve tag data
data	Pointer to memory in which to store consecutive tag values, one for each passed entity.

Implements moab::TagInfo.

Definition at line 97 of file VarLenSparseTag.cpp.

{
  return not_var_len(error, get_name());
}

ErrorCode moab::VarLenSparseTag::get_data	(	const SequenceManager *	seqman,
		Error *	error_handler,
		const EntityHandle *	entities,
		size_t	num_entities,
		const void **	data_ptrs,
		int *	data_lengths
	)		const `[virtual]`

Get tag value for passed entities.

Get tag values for specified entities.

Parameters:

seqman	Pointer to mesh entity database
entities	Entity handles for which to retrieve tag data
num_entities	Length of `entities` array
data_ptrs	Array of pointers to tag values, one pointer for each passed entity.
data_lengths	One value for each entity specifying the length of the tag value for the corresponding entity.

Implements moab::TagInfo.

Definition at line 105 of file VarLenSparseTag.cpp.

{
  if (!lengths)
    return not_var_len(error, get_name());

  ErrorCode rval;
  for (size_t i = 0; i < num_entities; ++i)
    if (MB_SUCCESS != (rval = get_data_ptr(error, entities[i], pointers[i], lengths[i])))
      return rval;
  return MB_SUCCESS;
}

ErrorCode moab::VarLenSparseTag::get_data	(	const SequenceManager *	seqman,
		Error *	error_handler,
		const Range &	entities,
		const void **	data_ptrs,
		int *	data_lengths
	)		const `[virtual]`

Get tag value for passed entities.

Get tag values for specified entities.

Parameters:

seqman	Pointer to mesh entity database
entities	Entity handles for which to retrieve tag data
data_ptrs	Array of pointers to tag values, one pointer for each passed entity.
data_lengths	One value for each entity specifying the length of the tag value for the corresponding entity.

Implements moab::TagInfo.

Definition at line 122 of file VarLenSparseTag.cpp.

{
  if (!lengths)
    return not_var_len(error, get_name());

  ErrorCode rval;
  Range::const_iterator i;
  for (i = entities.begin(); i != entities.end(); ++i, ++pointers, ++lengths)
    if (MB_SUCCESS != (rval = get_data_ptr(error, *i, *pointers, *lengths)))
      return rval;
  return MB_SUCCESS;
}

ErrorCode moab::VarLenSparseTag::get_data_ptr	(	Error *	error_handler,
		EntityHandle	entity_handle,
		const void *&	data,
		int &	size
	)		const `[inline, private]`

get the variable-length data for an entity id

Definition at line 67 of file VarLenSparseTag.cpp.

{
  MapType::const_iterator iter = mData.find(entity_handle);

  if (iter != mData.end()) {
    ptr = iter->second.data();
    length = iter->second.size();
  }
  else if (get_default_value()) {
    ptr = get_default_value();
    length = get_default_value_size();
  }
  else 
    return not_found(error, get_name(), entity_handle);
  
  return MB_SUCCESS;
}

ErrorCode moab::VarLenSparseTag::get_memory_use	(	const SequenceManager *	seqman,
		unsigned long &	total,
		unsigned long &	per_entity
	)		const `[virtual]`

Get memory use for tag data.

Implements moab::TagInfo.

Definition at line 463 of file VarLenSparseTag.cpp.

{
  total = mData.size() * (3*sizeof(void*) + sizeof(VarLenTag));
  for (MapType::const_iterator i = mData.begin(); i != mData.end(); ++i)
    total += i->second.mem();
  if (mData.size())
    per_entity = total / mData.size();
  total += sizeof(*this) + TagInfo::get_memory_use();
      
  return MB_SUCCESS;
}

unsigned long moab::VarLenSparseTag::get_number_entities ( ) [inline]

get number of entities

Definition at line 392 of file VarLenSparseTag.hpp.

    { return mData.size(); }

TagType moab::VarLenSparseTag::get_storage_type ( ) const [virtual]

Implements moab::TagInfo.

Definition at line 58 of file VarLenSparseTag.cpp.

  { return MB_TAG_SPARSE; }

ErrorCode moab::VarLenSparseTag::get_tagged_entities	(	const SequenceManager *	seqman,
		Range &	output_entities,
		EntityType	type = `MBMAXTYPE`,
		const Range *	intersect = `0`
	)		const `[virtual]`

Get all tagged entities.

gets all entity handles that match a type and tag

Get the list of entities for which the a tag value has been set, or a close approximation if the tag storage scheme cannot accurately determine exactly which entities have explicit values.

Parameters:

seqman	Pointer to entity storage database
output_entities	Results appended to this range
type	Optional entity type. If specified, search is limited to entities of specified type.
intersect	Opotional intersect list. If specified, search is restricted to entities in this list.

Implements moab::TagInfo.

Definition at line 369 of file VarLenSparseTag.cpp.

{
  get_tagged( mData, entities, type, intersect );
  return MB_SUCCESS;
}

bool moab::VarLenSparseTag::is_tagged	(	const SequenceManager *	,
		EntityHandle	h
	)		const `[virtual]`

Check if entity is tagged.

Implements moab::TagInfo.

Definition at line 458 of file VarLenSparseTag.cpp.

{
  return mData.find(h) != mData.end();
}

ErrorCode moab::VarLenSparseTag::num_tagged_entities	(	const SequenceManager *	seqman,
		size_t &	output_count,
		EntityType	type = `MBMAXTYPE`,
		const Range *	intersect = `0`
	)		const `[virtual]`

Count all tagged entities.

gets all entity handles that match a type and tag

Count the entities for which the a tag value has been set, or a close approximation if the tag storage scheme cannot accurately determine exactly which entities have explicit values.

Parameters:

seqman	Pointer to entity storage database
output_count	This is incremented for each detected entity.
type	Optional entity type. If specified, search is limited to entities of specified type.
intersect	Opotional intersect list. If specified, search is restricted to entities in this list.

Implements moab::TagInfo.

Definition at line 379 of file VarLenSparseTag.cpp.

{
  InsertCount counter( output_count );
  get_tagged( mData, counter, type, intersect );
  output_count = counter.end();
  return MB_SUCCESS;
}

VarLenSparseTag& moab::VarLenSparseTag::operator= ( const VarLenSparseTag & ) [private]

ErrorCode moab::VarLenSparseTag::release_all_data	(	SequenceManager *	seqman,
		Error *	error_handler,
		bool	delete_pending
	)		`[virtual]`

Remove/clear tag data for all entities.

Remove tag values from entities.

Parameters:

delete_pending If true, then release any global data associated with the tag in preparation for deleting the tag itself.

Invalidates tag if tag_delete_pending is true. The only valid method that can be invoked that is is the destructor.

Parameters:

seqman Pointer to mesh entity database

Implements moab::TagInfo.

Definition at line 61 of file VarLenSparseTag.cpp.

{
  mData.clear();
  return MB_SUCCESS;
}

ErrorCode moab::VarLenSparseTag::remove_data	(	SequenceManager *	seqman,
		Error *	error_handler,
		const EntityHandle *	entities,
		size_t	num_entities
	)		`[virtual]`

Remove/clear tag data for entities.

Remove tag values from entities.

Parameters:

seqman	Pointer to mesh entity database
entities	Entity handles for which to store tag data
num_entities	Length of `entities` array

Implements moab::TagInfo.

Definition at line 265 of file VarLenSparseTag.cpp.

{
  ErrorCode result = MB_SUCCESS;
  for (size_t i = 0; i < num_entities; ++i) {
    MapType::iterator p = mData.find(entities[i]);
    if (p == mData.end())
      result = not_found(error, get_name(), entities[i]);
    else {
      p->second.clear();
      mData.erase(p);
    }
  }
  return result;
}

ErrorCode moab::VarLenSparseTag::remove_data	(	SequenceManager *	seqman,
		Error *	error_handler,
		const Range &	entities
	)		`[virtual]`

Remove/clear tag data for entities.

Remove tag values from entities.

Parameters:

seqman	Pointer to mesh entity database
entities	Entity handles for which to store tag data

Implements moab::TagInfo.

Definition at line 283 of file VarLenSparseTag.cpp.

{
  ErrorCode result = MB_SUCCESS;
  for (Range::iterator i = entities.begin(); i != entities.end(); ++i) {
    MapType::iterator p = mData.find(*i);
    if (p == mData.end())
      result = not_found(error, get_name(), *i);
    else {
      p->second.clear();
      mData.erase(p);
    }
  }
  return result;
}

ErrorCode moab::VarLenSparseTag::set_data	(	SequenceManager *	seqman,
		Error *	error_handler,
		const EntityHandle *	entities,
		size_t	num_entities,
		const void *	data
	)		`[virtual]`

Set tag value for passed entities.

Store tag data or update stored tag values Will fail for variable-length data.

Parameters:

seqman	Pointer to mesh entity database
entities	Entity handles for which to store tag data
num_entities	Length of `entities` array
data	Pointer to memory holding consecutive tag values, one for each passed entity.

Implements moab::TagInfo.

Definition at line 139 of file VarLenSparseTag.cpp.

{
  return not_var_len(error, get_name());
}

ErrorCode moab::VarLenSparseTag::set_data	(	SequenceManager *	seqman,
		Error *	error_handler,
		const Range &	entities,
		const void *	data
	)		`[virtual]`

Set tag value for passed entities.

Store tag data or update stored tag values Will fail for variable-length data.

Parameters:

seqman	Pointer to mesh entity database
entities	Entity handles for which to store tag data
data	Pointer to memory holding consecutive tag values, one for each passed entity.

Implements moab::TagInfo.

Definition at line 148 of file VarLenSparseTag.cpp.

{
  return not_var_len(error, get_name());
}

ErrorCode moab::VarLenSparseTag::set_data	(	SequenceManager *	seqman,
		Error *	error_handler,
		const EntityHandle *	entities,
		size_t	num_entities,
		void const const	data_ptrs,
		const int *	data_lengths
	)		`[virtual]`

Set tag value for passed entities.

Store tag data or update stored tag values

Parameters:

seqman	Pointer to mesh entity database
entities	Entity handles for which to store tag data
num_entities	Length of `entities` array
data_ptrs	Array of pointers to tag values, one pointer for each passed entity.
data_lengths	One value for each entity specifying the length of the tag value for the corresponding entity. Array is required for variable-length tags and is ignored for fixed-length tags.

Implements moab::TagInfo.

Definition at line 156 of file VarLenSparseTag.cpp.

{
  ErrorCode rval = validate_lengths( error, lengths, num_entities );
  if (MB_SUCCESS != rval)
    return rval;
    
  rval = seqman->check_valid_entities( error, entities, num_entities, true );
  if (MB_SUCCESS != rval)
    return rval;
  
  for (size_t i = 0; i < num_entities; ++i) {
    if (lengths[i])
      mData[entities[i]].set( pointers[i], lengths[i] );
    else {
      MapType::iterator iter = mData.find(entities[i]);
      if (iter != mData.end()) {
        iter->second.clear();
        mData.erase(iter);
      }
    }
  }
  return MB_SUCCESS;
}

ErrorCode moab::VarLenSparseTag::set_data	(	SequenceManager *	seqman,
		Error *	error_handler,
		const Range &	entities,
		void const const	data_ptrs,
		const int *	data_lengths
	)		`[virtual]`

Set tag value for passed entities.

Store tag data or update stored tag values

Parameters:

seqman	Pointer to mesh entity database
entities	Entity handles for which to store tag data
data_ptrs	Array of pointers to tag values, one pointer for each passed entity.
data_lengths	One value for each entity specifying the length of the tag value for the corresponding entity. Array is required for variable-length tags and is ignored for fixed-length tags.

Implements moab::TagInfo.

Definition at line 185 of file VarLenSparseTag.cpp.

{
  ErrorCode rval = validate_lengths( error, lengths, entities.size() );
  if (MB_SUCCESS != rval)
    return rval;
    
  rval = seqman->check_valid_entities( error, entities );
  if (MB_SUCCESS != rval)
    return rval;
  
  Range::const_iterator i;
  for (i = entities.begin(); i != entities.end(); ++i, ++pointers, ++lengths) {
    if (*lengths)
      mData[*i].set( *pointers, *lengths );
    else {
      MapType::iterator iter = mData.find(*i);
      if (iter != mData.end()) {
        iter->second.clear();
        mData.erase(iter);
      }
    }
  }
  return MB_SUCCESS;
}

ErrorCode moab::VarLenSparseTag::tag_iterate	(	SequenceManager *	seqman,
		Error *	error_handler,
		Range::iterator &	iter,
		const Range::iterator &	end,
		void *&	data_ptr,
		bool	allocate = `true`
	)		`[virtual]`

Access tag data via direct pointer into contiguous blocks.

Iteratively obtain direct access to contiguous blocks of tag storage. This function cannot be used with bit tags because of the compressed bit storage. This function cannot be used with variable length tags because it does not provide a mechanism to determine the length of the value for each entity. This function may be used with sparse tags, but if it is used, it will return data for a single entity at a time.

Parameters:

iter	As input, the first entity for which to return data. As output, one past the last entity for which data was returned.
end	One past the last entity for which data is desired
data_ptr	Output: pointer to tag storage.

If this function is called for entities for which no tag value has been set, but for which a default value exists, it will force the allocation of explicit storage for each such entity even though MOAB would normally not explicitly store tag values for such entities.

Implements moab::TagInfo.

Definition at line 300 of file VarLenSparseTag.cpp.

{
  error->set_last_error( "Cannot iterate over variable-length tag data" );
  return MB_VARIABLE_DATA_LENGTH;
}

Member Data Documentation

MapType moab::VarLenSparseTag::mData [private]

Definition at line 415 of file VarLenSparseTag.hpp.

The documentation for this class was generated from the following files:

Public Types

Public Member Functions

Private Member Functions

Private Attributes

Detailed Description

Member Typedef Documentation

Constructor & Destructor Documentation

Member Function Documentation

Member Data Documentation